CSMD3

General Information

Gene Name       : CSMD3
Gene ID             : ENSG00000164796.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CSMD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSMD3ENSG00000164796.170.000.000.00ENCSR000AEF
HepG2CSMD3ENSG00000164796.170.040.030.04ENCSR985KAT
K562CSMD3ENSG00000164796.170.000.020.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CSMD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CSMD3 RNA is bound by 1 proteins.  







eCLIP assay for CSMD3 is not avaliable on ENCORE database.





1 proteins are bound to CSMD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8113382368113382377-intron-Distal7.9217430.84008K562FASTKD2
chr8113382377113382387-intron-Distal7.9217430.84008K562FASTKD2
chr8113382365113382368-intron-Distal7.7943427.57589K562FASTKD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CSMD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CSMD3 is not available on ENCORE database.

  • 91 RBPs can affect the levels of CSMD3.  








The Knockdown/knockout RNA-Seq assay for CSMD3 is not available on ENCORE database.





91 RBPs can affect the gene expression of CSMD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CSMD3ENSG00000164796.1312.3117098.39480-2.9986014.4411012.44070HepG2ADAR
CSMD3ENSG00000164796.1322.891001.877403.607803.625303.02740HepG2AKAP1
CSMD3ENSG00000164796.13163.8605054.232401.595103.202201.41080HepG2APOBEC3C
CSMD3ENSG00000164796.13125.6405063.448500.985503.562302.70390HepG2CALR
CSMD3ENSG00000164796.1366.76410128.58680-0.945603.118102.07860HepG2CCAR1
CSMD3ENSG00000164796.1325.23910100.89700-1.999109.382507.54420HepG2YBX3
CSMD3ENSG00000164796.1317.7198062.10170-1.809305.126003.72300HepG2CSTF2
CSMD3ENSG00000164796.1319.9299072.49430-1.862906.154205.26690HepG2CELF1
CSMD3ENSG00000164796.1325.5707077.94020-1.607905.809304.79110HepG2DAZAP1
CSMD3ENSG00000164796.1333.82750101.04850-1.578806.448804.76460HepG2DDX1
CSMD3ENSG00000164796.136.5649040.31970-2.618605.580004.28080HepG2DDX24
CSMD3ENSG00000164796.1396.1383037.859201.344404.835603.09770HepG2DDX52
CSMD3ENSG00000164796.134.00510106.05140-4.726806.453304.98830HepG2DDX59
CSMD3ENSG00000164796.1315.4004095.56560-2.6335012.1902010.32920HepG2DHX30
CSMD3ENSG00000164796.139.5791053.12630-2.471506.649405.68630HepG2DKC1
CSMD3ENSG00000164796.1326.5267099.08840-1.901308.716207.52340HepG2DNAJC21
CSMD3ENSG00000164796.1344.9077098.19150-1.128604.572003.76980HepG2DNAJC2
CSMD3ENSG00000164796.1396.3656037.658801.355404.648403.20800HepG2EFTUD2
CSMD3ENSG00000164796.13124.505601.597806.2839012.6931011.27350HepG2EIF4B
CSMD3ENSG00000164796.1322.5089076.90050-1.772505.855104.71690HepG2EIF4G1
CSMD3ENSG00000164796.1328.9639073.66440-1.346703.698302.76600HepG2EIF4G2
CSMD3ENSG00000164796.1312.9645037.22120-1.521602.567401.51360HepG2ESF1
CSMD3ENSG00000164796.1336.4603082.28550-1.174303.641302.19360HepG2FKBP4
CSMD3ENSG00000164796.1315.3225093.53120-2.609803.508602.35960HepG2FTO
CSMD3ENSG00000164796.13101.132101.653005.9349019.1506017.50580HepG2FXR1
CSMD3ENSG00000164796.1375.6286032.650401.211703.103802.15140HepG2GEMIN5
CSMD3ENSG00000164796.136.15600105.89760-4.104505.614904.72430HepG2GPKOW
CSMD3ENSG00000164796.1311.0117053.01190-2.267306.938805.48110HepG2HDGF
CSMD3ENSG00000164796.1319.99890100.03750-2.322509.597308.50140HepG2HNRNPA1
CSMD3ENSG00000164796.13197.20230111.265900.825602.050201.44300HepG2HNRNPC
CSMD3ENSG00000164796.1344.55560202.26790-2.1826019.7733018.09620HepG2HNRNPF
CSMD3ENSG00000164796.1321.5962070.99490-1.716905.526604.60270HepG2HNRNPL
CSMD3ENSG00000164796.1318.46810101.05740-2.452103.339302.65470HepG2HNRNPLL
CSMD3ENSG00000164796.13100.0570029.934301.740907.073405.65670HepG2HNRNPM
CSMD3ENSG00000164796.1357.85190110.53080-0.934003.532702.85620HepG2HNRNPU
CSMD3ENSG00000164796.1328.29790199.17950-2.8153025.3967023.47810HepG2IGF2BP1
CSMD3ENSG00000164796.1314.529901.564403.215202.494001.84950HepG2IGF2BP2
CSMD3ENSG00000164796.1334.869801.462104.575705.797104.40030HepG2IGF2BP3
CSMD3ENSG00000164796.1351.79020112.90480-1.124405.371004.37600HepG2ILF2
CSMD3ENSG00000164796.1315.0574050.75780-1.753204.592003.28710HepG2KIF1C
CSMD3ENSG00000164796.13232.26640135.771000.774503.405702.48380HepG2LARP4
CSMD3ENSG00000164796.13140.4870065.045001.110804.868903.36580HepG2LARP7
CSMD3ENSG00000164796.1318.550801.653503.487803.360402.63740HepG2MAGOH
CSMD3ENSG00000164796.1315.242401.664103.195202.407601.81670HepG2MATR3
CSMD3ENSG00000164796.13136.0853038.379301.826005.864004.37940HepG2METAP2
CSMD3ENSG00000164796.1339.4830077.28590-0.969002.486401.76570HepG2NOL12
CSMD3ENSG00000164796.133.2797089.58560-4.771606.234505.13910HepG2NSUN2
CSMD3ENSG00000164796.1310.1742053.05540-2.382602.070001.31890HepG2PABPC1
CSMD3ENSG00000164796.1318.1122052.80550-1.543703.935701.88040HepG2PES1
CSMD3ENSG00000164796.1321.8560098.58590-2.1734010.717009.31500HepG2PPIL4
CSMD3ENSG00000164796.135.1458056.35260-3.4530010.773409.39090HepG2PRPF4
CSMD3ENSG00000164796.13126.875001.448106.4530034.9510033.44970HepG2PTBP1
CSMD3ENSG00000164796.1344.2074078.32210-0.825102.074201.54570HepG2PUM1
CSMD3ENSG00000164796.138.3841078.26310-3.2226012.1208010.77470HepG2PUM2
CSMD3ENSG00000164796.1312.2928063.80580-2.375907.518706.20060HepG2RBM15
CSMD3ENSG00000164796.13786.9020084.081303.2262097.1247094.93580HepG2RBM22
CSMD3ENSG00000164796.1397.527801.611905.9189023.0739021.81190HepG2NELFE
CSMD3ENSG00000164796.1356.910101.500705.2448013.5531012.34610HepG2RECQL
CSMD3ENSG00000164796.13139.52850217.84170-0.642702.621501.95370HepG2RPLP0
CSMD3ENSG00000164796.134.7529047.25780-3.313707.871306.35050HepG2RPS10
CSMD3ENSG00000164796.13223.2175035.681302.6451024.0288022.50550HepG2RPS19
CSMD3ENSG00000164796.13184.0668072.337901.347307.411806.14220HepG2RPS2
CSMD3ENSG00000164796.13168.9805075.427601.163604.917603.90170HepG2RRP9
CSMD3ENSG00000164796.1346.9548098.43690-1.067903.906403.16360HepG2SAFB2
CSMD3ENSG00000164796.1321.47180100.04370-2.220102.986402.25340HepG2SF3B1
CSMD3ENSG00000164796.1371.962301.508305.576208.905507.93650HepG2SF3B4
CSMD3ENSG00000164796.1314.3070070.74810-2.306007.930506.83530HepG2SLBP
CSMD3ENSG00000164796.13210.76830114.801300.876405.509604.65330HepG2SMN1
CSMD3ENSG00000164796.1315.51920111.31010-2.842503.877802.94410HepG2SNRNP70
CSMD3ENSG00000164796.13328.4797094.961001.7903022.2938021.22710HepG2SRFBP1
CSMD3ENSG00000164796.1333.0608094.15740-1.510005.131903.03560HepG2SRP68
CSMD3ENSG00000164796.1357.588401.574005.1931012.8898012.03150HepG2SRSF1
CSMD3ENSG00000164796.13182.4531072.849101.324403.777403.06700HepG2SRSF5
CSMD3ENSG00000164796.1365.73930198.70990-1.5958012.3462011.05820HepG2SRSF7
CSMD3ENSG00000164796.1311.713601.280403.193502.361501.84390HepG2SRSF9
CSMD3ENSG00000164796.132.0596082.43860-5.3229021.2448020.11540HepG2SSB
CSMD3ENSG00000164796.136.8386050.57710-2.886702.624501.55730HepG2STIP1
CSMD3ENSG00000164796.1314.2721044.93220-1.654502.534901.38470HepG2SUB1
CSMD3ENSG00000164796.13276.7058082.846501.7397012.8556011.67990HepG2SUCLG1
CSMD3ENSG00000164796.1351.2066098.41260-0.942502.430401.79100HepG2SUPV3L1
CSMD3ENSG00000164796.134.3346033.77390-2.961904.776303.40440HepG2TBRG4
CSMD3ENSG00000164796.1370.02980107.42870-0.617301.834901.40980HepG2TIAL1
CSMD3ENSG00000164796.1313.3486048.30180-1.855403.530201.88020HepG2TRA2A
CSMD3ENSG00000164796.1336.02990108.35970-1.588608.078907.19420HepG2TRIM56
CSMD3ENSG00000164796.130.0000058.13280-99999.9999917.5714015.68890HepG2UCHL5
CSMD3ENSG00000164796.132.6427024.67250-3.222804.511303.65500HepG2UPF1
CSMD3ENSG00000164796.1314.7610090.10610-2.609809.246607.36240HepG2UPF2
CSMD3ENSG00000164796.13157.9621052.887601.578508.367206.62160HepG2XRCC6
CSMD3ENSG00000164796.132.7300096.87650-5.1492023.2867021.28200HepG2XRN2
CSMD3ENSG00000164796.1317.6173055.61270-1.658404.378803.56450HepG2ZC3H8
CSMD3ENSG00000164796.1319.8773048.06370-1.273802.580701.33360HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CSMD3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CSMD3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CSMD3 is not avaliable on ENCORE database.