COL6A1

General Information

Gene Name       : COL6A1
Gene ID             : ENSG00000142156.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL6A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL6A1ENSG00000142156.140.000.000.00ENCSR000AEF
HepG2COL6A1ENSG00000142156.1412.791.847.31ENCSR985KAT
K562COL6A1ENSG00000142156.140.150.050.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL6A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL6A1 RNA is bound by 6 proteins.  







eCLIP assay for COL6A1 is not avaliable on ENCORE database.





6 proteins are bound to COL6A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr214741207647412118+CDS,intron-Proximal4.6927510.48252HepG2PPIG
chr214742337247423441+CDS3.995723.44763HepG2LSM11
chr214742122747421299+CDS4.165283.60441HepG2GRWD1
chr214741408147414118+CDS4.114135.80295HepG2PPIG
chr214741211847412129+CDS4.313734.08604HepG2PPIG
chr214742108847421171+CDS,intron-Proximal4.899085.98353HepG2EFTUD2
chr214741227747412309+CDS4.821645.86613HepG2PPIG
chr214741411847414144+CDS,intron-Proximal3.393966.54857HepG2PPIG
chr214741408047414144+CDS,intron-Proximal4.952185.24633HepG2SND1
chr214742125747421296+CDS4.816385.56813HepG2PPIG
chr214740966547409689+CDS,intron-Proximal3.655754.13746HepG2PPIG
chr214741018047410194+CDS3.393963.32039HepG2PPIG
chr214741266247412722+CDS3.863817.26626HepG2PPIG
chr214742331047423367+CDS3.419573.86489HepG2PABPN1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL6A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL6A1 is not available on ENCORE database.

  • 112 RBPs can affect the levels of COL6A1.  








The Knockdown/knockout RNA-Seq assay for COL6A1 is not available on ENCORE database.





112 RBPs can affect the gene expression of COL6A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL6A1ENSG00000142156.10138.41620361.81640-1.386202.567101.53180HepG2AATF
COL6A1ENSG00000142156.10922.36400673.792200.452903.495302.64420HepG2AKAP8L
COL6A1ENSG00000142156.10938.35360510.619000.877804.666103.65960HepG2ASCC1
COL6A1ENSG00000142156.10581.73660789.86470-0.441202.995901.53440HepG2ATP5C1
COL6A1ENSG00000142156.10725.90700338.709301.099604.167603.02080HepG2BCCIP
COL6A1ENSG00000142156.10518.59370294.254300.817405.268604.06470HepG2BCLAF1
COL6A1ENSG00000142156.10168.83630626.20030-1.8910032.2492030.59120HepG2BOP1
COL6A1ENSG00000142156.10442.06590670.52030-0.601004.773503.94490HepG2CKAP4
COL6A1ENSG00000142156.10158.30510471.47630-1.574502.607901.86630HepG2CNOT7
COL6A1ENSG00000142156.101387.24260574.879201.270809.831308.61310HepG2CPSF6
COL6A1ENSG00000142156.10107.51450209.13590-0.959905.766204.30350HepG2CSTF2
COL6A1ENSG00000142156.10552.17000387.909300.509304.269303.50250HepG2CELF1
COL6A1ENSG00000142156.10583.90230417.173100.485004.545003.63080HepG2DAZAP1
COL6A1ENSG00000142156.101050.242601774.23180-0.7565011.308408.96670HepG2DDX47
COL6A1ENSG00000142156.10845.23420333.051601.343503.675002.79730HepG2DDX55
COL6A1ENSG00000142156.10829.48530597.851500.472303.586202.44080HepG2DDX5
COL6A1ENSG00000142156.101564.93330508.153601.622705.116704.29980HepG2DDX6
COL6A1ENSG00000142156.101361.66330641.545601.0856030.0219028.40600HepG2DKC1
COL6A1ENSG00000142156.10449.47110269.696200.736803.279102.51790HepG2DNAJC21
COL6A1ENSG00000142156.10421.03780267.379600.655006.790305.83240HepG2DNAJC2
COL6A1ENSG00000142156.10957.12980488.099700.971404.730103.96620HepG2EIF2S1
COL6A1ENSG00000142156.10624.16990394.204200.662904.172203.18310HepG2EIF4G2
COL6A1ENSG00000142156.101919.71280690.233801.4756061.3004059.16850HepG2ETF1
COL6A1ENSG00000142156.101355.17950575.878801.234507.327705.68640HepG2FTO
COL6A1ENSG00000142156.10500.72940681.18600-0.444003.329702.47140HepG2FUBP3
COL6A1ENSG00000142156.10987.64460504.916100.967805.595404.66260HepG2G3BP1
COL6A1ENSG00000142156.10874.50530536.436400.705002.726401.84320HepG2G3BP2
COL6A1ENSG00000142156.10531.04450294.202500.851902.755401.74010HepG2GNB2L1
COL6A1ENSG00000142156.103213.63700651.651702.301908.763607.66720HepG2GPKOW
COL6A1ENSG00000142156.101658.86530511.993701.6959029.4643027.44920HepG2HNRNPK
COL6A1ENSG00000142156.10572.95120380.035600.592206.349005.36790HepG2HNRNPL
COL6A1ENSG00000142156.10484.97240621.88490-0.358701.921501.38850HepG2HNRNPLL
COL6A1ENSG00000142156.10648.98210300.879401.1089012.4405011.23190HepG2HNRNPU
COL6A1ENSG00000142156.10886.60680450.083400.978003.950302.47870HepG2KHDRBS1
COL6A1ENSG00000142156.101349.37290793.563000.765806.466304.56540HepG2KRR1
COL6A1ENSG00000142156.101458.851601128.367800.370502.050001.34400HepG2LARP4
COL6A1ENSG00000142156.10592.98170288.297101.0403011.534009.37020HepG2LARP7
COL6A1ENSG00000142156.10548.56060715.39040-0.383102.543301.76580HepG2MSI2
COL6A1ENSG00000142156.10505.21400260.663800.954609.151006.66610HepG2NIP7
COL6A1ENSG00000142156.10548.56920228.111101.265806.264504.11420HepG2NOLC1
COL6A1ENSG00000142156.101458.53600305.979102.2529021.5009018.36100HepG2NONO
COL6A1ENSG00000142156.10966.22830357.431601.434604.040601.81150HepG2NUFIP2
COL6A1ENSG00000142156.10423.55320554.08970-0.387603.010702.38160HepG2PCBP1
COL6A1ENSG00000142156.10562.59470390.085800.528202.500001.33610HepG2PKM
COL6A1ENSG00000142156.10784.85080268.356601.5482018.5603016.77330HepG2PPIL4
COL6A1ENSG00000142156.10666.42010471.128700.500202.759401.98670HepG2PRPF4
COL6A1ENSG00000142156.101254.75270394.857501.6679039.7904037.86080HepG2PUF60
COL6A1ENSG00000142156.10520.26970419.134200.311701.959301.44280HepG2PUM1
COL6A1ENSG00000142156.101943.61990418.843302.2142016.4613014.90710HepG2PUM2
COL6A1ENSG00000142156.10285.81530682.99180-1.2568014.2605013.05200HepG2PUS1
COL6A1ENSG00000142156.10243.52830610.60890-1.3262020.9327019.44620HepG2QKI
COL6A1ENSG00000142156.10662.83730969.60950-0.548702.821501.95680HepG2RBM15
COL6A1ENSG00000142156.10348.40740576.90830-0.727607.676506.91350HepG2RBM22
COL6A1ENSG00000142156.10782.94360554.173000.498504.409003.57370HepG2RBM25
COL6A1ENSG00000142156.10782.52260347.651001.1704014.3066012.07470HepG2RBM27
COL6A1ENSG00000142156.10881.64440315.170601.484004.667502.45310HepG2RBM39
COL6A1ENSG00000142156.10875.56880584.410000.583107.730406.77670HepG2RECQL
COL6A1ENSG00000142156.10486.05310293.861200.725904.982502.26950HepG2RPL23A
COL6A1ENSG00000142156.101449.10610459.072001.6583025.2084023.65940HepG2RPS19
COL6A1ENSG00000142156.101043.52570320.606401.7025032.2545029.76090HepG2RPS2
COL6A1ENSG00000142156.101293.96520474.233401.4480013.7926012.06270HepG2RPS3A
COL6A1ENSG00000142156.10760.96350327.291001.2172015.3306012.85620HepG2RPS5
COL6A1ENSG00000142156.10500.29410267.933700.9008012.0878010.88840HepG2SAFB2
COL6A1ENSG00000142156.101261.75240347.169801.861608.885206.26290HepG2SF1
COL6A1ENSG00000142156.10472.729801082.25590-1.1950013.4364011.88630HepG2SF3A3
COL6A1ENSG00000142156.10884.91770378.556501.2249031.1226029.28510HepG2SLBP
COL6A1ENSG00000142156.10779.16970312.434501.3183033.2762031.46580HepG2SMN1
COL6A1ENSG00000142156.10254.09680684.89160-1.4305013.6393011.92770HepG2SNRNP70
COL6A1ENSG00000142156.10130.94510651.59770-2.3150059.9922058.43950HepG2SRFBP1
COL6A1ENSG00000142156.10194.91870612.69620-1.6523032.5973031.36660HepG2SRSF1
COL6A1ENSG00000142156.10425.55920662.34570-0.638203.958302.73880HepG2SRSF3
COL6A1ENSG00000142156.10804.20590389.834901.0446019.8342018.36390HepG2SRSF5
COL6A1ENSG00000142156.10646.81760498.465800.375803.383302.78570HepG2SRSF9
COL6A1ENSG00000142156.102030.74650565.742901.8437078.6849076.92600HepG2SSB
COL6A1ENSG00000142156.101363.35580791.487300.784408.111306.08510HepG2SSRP1
COL6A1ENSG00000142156.101143.76010443.374801.3671018.1488016.78120HepG2SUCLG1
COL6A1ENSG00000142156.10941.62060331.501001.5060019.2533017.74550HepG2SUPV3L1
COL6A1ENSG00000142156.10986.19250606.194800.702007.660606.53080HepG2TARDBP
COL6A1ENSG00000142156.10622.60750222.165001.4866017.9254015.88410HepG2TFIP11
COL6A1ENSG00000142156.10354.41880506.03010-0.513803.956702.96460HepG2TIA1
COL6A1ENSG00000142156.101016.70920292.279701.7984035.5809034.15780HepG2TIAL1
COL6A1ENSG00000142156.10519.30250294.979200.815906.257305.47070HepG2TRIM56
COL6A1ENSG00000142156.101039.49510385.719101.430206.802305.33710HepG2TUFM
COL6A1ENSG00000142156.10419.07840756.29460-0.851707.065506.07150HepG2U2AF1
COL6A1ENSG00000142156.101294.25610959.796800.431206.548805.54900HepG2UPF1
COL6A1ENSG00000142156.10773.33680303.430201.349604.574403.26620HepG2UPF2
COL6A1ENSG00000142156.10400.82660926.64420-1.2090027.9308026.33020HepG2UTP3
COL6A1ENSG00000142156.10701.49140326.327801.1040010.584209.18540HepG2XRN2
COL6A1ENSG00000142156.10612.34510464.901400.397303.005202.31070HepG2ZC3H8
COL6A1ENSG00000142156.10906.208701055.59100-0.220101.998401.51290HepG2ZNF622
COL6A1ENSG00000142156.10250.8287060.738802.0459021.8146020.32920K562AGGF1
COL6A1ENSG00000142156.10161.8264063.202201.356307.843906.69030K562AKAP8L
COL6A1ENSG00000142156.1030.286008.208601.883302.849701.87570K562BCLAF1
COL6A1ENSG00000142156.10111.9648035.616801.652306.835004.48290K562CKAP4
COL6A1ENSG00000142156.1046.8249020.391401.199202.197401.49120K562CPSF6
COL6A1ENSG00000142156.1036.430306.227402.548304.427403.05160K562CSTF2
COL6A1ENSG00000142156.1041.761109.044402.207004.270502.18940K562DDX51
COL6A1ENSG00000142156.1011.7855031.43510-1.415402.023301.49010K562FXR1
COL6A1ENSG00000142156.1033.613608.387002.002702.973501.49230K562GEMIN5
COL6A1ENSG00000142156.1081.4201019.469402.064107.158305.88000K562GPKOW
COL6A1ENSG00000142156.10182.0915028.260102.6877017.6907015.72450K562GRSF1
COL6A1ENSG00000142156.1066.9694024.349801.459504.476103.11380K562HNRNPA1
COL6A1ENSG00000142156.1044.5101018.756801.246602.069201.54250K562HNRNPC
COL6A1ENSG00000142156.1087.7146026.970301.701306.824105.41740K562HNRNPU
COL6A1ENSG00000142156.1027.505609.015201.609202.492501.37590K562IGF2BP3
COL6A1ENSG00000142156.1038.765909.297302.059804.218303.17660K562MAGOH
COL6A1ENSG00000142156.10172.5257075.136701.199107.064105.48580K562MBNL1
COL6A1ENSG00000142156.1095.8221032.747901.548906.426505.24110K562MTPAP
COL6A1ENSG00000142156.1071.6073036.374800.977102.563801.84160K562NSUN2
COL6A1ENSG00000142156.10120.0838046.798601.359403.516202.57800K562PCBP3
COL6A1ENSG00000142156.1069.5369035.893100.954002.162601.45480K562POLR2G
COL6A1ENSG00000142156.1041.0779017.114701.263002.370301.61240K562PPIG
COL6A1ENSG00000142156.10143.9215016.820603.0969019.4133016.60900K562PSIP1
COL6A1ENSG00000142156.1099.6916049.657801.005302.514601.59800K562PUM2
COL6A1ENSG00000142156.10124.6729061.070801.029504.264803.54400K562RBM15
COL6A1ENSG00000142156.1027.779508.647001.683602.515501.71710K562RBM22
COL6A1ENSG00000142156.1071.891908.287303.116809.465907.94250K562RPS19
COL6A1ENSG00000142156.10130.6657025.526302.3557011.024607.97940K562SBDS
COL6A1ENSG00000142156.10127.4633061.673001.047302.943701.57960K562SFPQ
COL6A1ENSG00000142156.1053.8577017.695701.605703.883502.36600K562SLBP
COL6A1ENSG00000142156.1070.9701036.791100.947802.457401.56910K562SRPK2
COL6A1ENSG00000142156.1028.291408.376901.755802.627701.60990K562SRSF5
COL6A1ENSG00000142156.1090.0894040.851501.140903.859102.05540K562SRSF9
COL6A1ENSG00000142156.1036.116408.645302.062603.785202.80550K562TIA1
COL6A1ENSG00000142156.1054.5739017.203001.665503.792802.65160K562TRIM56
COL6A1ENSG00000142156.1055.0091017.588401.644904.001902.25360K562TRIP6
COL6A1ENSG00000142156.1037.567208.337202.171703.720702.52370K562UCHL5
COL6A1ENSG00000142156.10120.3841063.550200.921602.650401.39330K562UTP18
COL6A1ENSG00000142156.1088.0710043.003401.034103.007701.74890K562UTP3
COL6A1ENSG00000142156.1037.873208.495802.156303.453402.05140K562XRN2
COL6A1ENSG00000142156.10105.5010043.044201.293305.380204.11060K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL6A1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COL6A1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COL6A1 is not avaliable on ENCORE database.