CLINT1

General Information

Gene Name : CLINT1
Gene ID : ENSG00000113282.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CLINT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CLINT1	ENSG00000113282.13	94.95	92.61	93.78	ENCSR000AEF
HepG2	CLINT1	ENSG00000113282.13	46.66	53.40	50.03	ENCSR985KAT
K562	CLINT1	ENSG00000113282.13	75.02	80.83	77.92	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CLINT1 is not avaliable on ENCORE database.

Proteins bound to RNA

CLINT1 RNA is bound by 28 proteins.

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eCLIP assay for CLINT1 is not avaliable on ENCORE database.

28 proteins are bound to CLINT1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	157214369	157214441	-	3'-UTR,intron-Distal,intron-Proximal	6.86919	135.57300	K562	LIN28B
chr5	157240062	157240127	-	CDS,intron-Distal,intron-Proximal	4.19794	22.80504	K562	ZNF622
chr5	157240117	157240220	-	CDS,intron-Distal	3.81054	17.98372	K562	UCHL5
chr5	157285938	157286070	-	5'-UTR,CDS,intron-Distal	3.36517	17.80438	K562	ZNF622
chr5	157214252	157214298	-	3'-UTR,intron-Distal	4.18403	17.40248	K562	LIN28B
chr5	157285936	157286098	-	5'-UTR,CDS,intron-Distal	3.52454	17.03995	K562	DDX3X
chr5	157240127	157240232	-	CDS,intron-Distal	3.12112	16.08490	K562	ZNF622
chr5	157240056	157240117	-	CDS,intron-Distal,intron-Proximal	3.46287	15.92841	K562	UCHL5
chr5	157221946	157222023	-	CDS,intron-Distal,intron-Proximal	3.46641	13.56120	K562	SF3B4
chr5	157232972	157233048	-	CDS,intron-Distal,intron-Proximal	4.58404	13.06301	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 72 entries

eCLIP assay for CLINT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CLINT1 is not available on ENCORE database.
64 RBPs can affect the levels of CLINT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CLINT1 is not available on ENCORE database.

64 RBPs can affect the gene expression of CLINT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CLINT1	ENSG00000113282.9	1651.70870	2852.93770	-0.78850	34.81500	33.43790	HepG2	ZNF622
CLINT1	ENSG00000113282.9	1310.12070	2561.61540	-0.96740	27.89640	25.67180	HepG2	NOL12
CLINT1	ENSG00000113282.9	1648.15950	3229.13140	-0.97030	18.91600	17.55870	HepG2	BOP1
CLINT1	ENSG00000113282.9	1808.55120	2646.33780	-0.54920	13.78420	12.81380	HepG2	SSB
CLINT1	ENSG00000113282.9	2938.40120	4502.39230	-0.61570	12.00360	10.35910	K562	CPSF6
CLINT1	ENSG00000113282.9	1357.51320	2536.71880	-0.90200	10.55060	9.57850	HepG2	AKAP1
CLINT1	ENSG00000113282.9	1746.77020	2705.55150	-0.63120	10.42850	9.32780	K562	HNRNPC
CLINT1	ENSG00000113282.9	3110.56610	4571.97870	-0.55560	9.26890	7.86220	K562	GRSF1
CLINT1	ENSG00000113282.9	1431.10400	1959.22610	-0.45320	8.51870	7.49740	HepG2	HNRNPU
CLINT1	ENSG00000113282.9	3136.14680	2406.80110	0.38180	7.78670	7.08650	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 68 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CLINT1 is not available on ENCORE database.

27 RBPs can affect the splicing of CLINT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CLINT1	ENSG00000113282.9	chr5	-	157230657	157230727	157221905	157221980	157232873	157233020	-0.15100	0.00000	excluded	K562	AQR
SE	CLINT1	ENSG00000113282.9	chr5	-	157217607	157217659	157216370	157216521	157218710	157218849	0.15100	0.00012	included	K562	SUPV3L1
SE	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157212750	157215000	157218710	157219003	-0.09600	0.00031	excluded	K562	TARDBP
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	0.20700	0.00012	longer	HepG2	SF3A3
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	-0.19700	0.00173	shorter	HepG2	HNRNPU
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	-0.26500	0.00052	shorter	HepG2	MATR3
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	-0.30200	0.00000	shorter	HepG2	SRSF1
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	0.28100	0.00000	longer	HepG2	U2AF2
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	-0.22400	0.00133	shorter	HepG2	HLTF
A3SS	CLINT1	ENSG00000113282.9	chr5	-	157216370	157216575	157216370	157216521	157218710	157219003	-0.23100	0.00002	shorter	HepG2	TIAL1

Showing 1 to 10 of 33 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CLINT1

General Information

Functions

Localization

Domains (AlphaFold: CLINT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CLINT1 is not avaliable on ENCORE database.

28 proteins are bound to CLINT1 RNA:

eCLIP assay for CLINT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CLINT1 is not available on ENCORE database.

64 RBPs can affect the gene expression of CLINT1 :

The Knockdown/knockout RNA-Seq assay for CLINT1 is not available on ENCORE database.

27 RBPs can affect the splicing of CLINT1 :

The Knockdown/knockout RNA-Seq assay for CLINT1 is not avaliable on ENCORE database.