CLINT1

General Information

Gene Name       : CLINT1
Gene ID             : ENSG00000113282.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLINT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLINT1ENSG00000113282.1394.9592.6193.78ENCSR000AEF
HepG2CLINT1ENSG00000113282.1346.6653.4050.03ENCSR985KAT
K562CLINT1ENSG00000113282.1375.0280.8377.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLINT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLINT1 RNA is bound by 28 proteins.  







eCLIP assay for CLINT1 is not avaliable on ENCORE database.





28 proteins are bound to CLINT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5157216311157216394-3'-UTR,CDS,intron-Distal,intron-Proximal5.049856.22530K562AQR
chr5157214369157214441-3'-UTR,intron-Distal,intron-Proximal6.86919135.57300K562LIN28B
chr5157214372157214450-3'-UTR,intron-Distal,intron-Proximal4.2943112.77113HepG2LIN28B
chr5157214252157214298-3'-UTR,intron-Distal4.1840317.40248K562LIN28B
chr5157214064157214128-3'-UTR,intron-Distal3.118825.20767K562PUM2
chr5157286040157286127-5'-UTR,intron-Distal3.656933.24881HepG2SRSF1
chr5157285938157286070-5'-UTR,CDS,intron-Distal3.3651717.80438K562ZNF622
chr5157285931157286029-5'-UTR,CDS,intron-Distal3.336924.13112K562SRSF1
chr5157285939157286036-5'-UTR,CDS,intron-Distal3.477879.21267K562UCHL5
chr5157285936157286044-5'-UTR,CDS,intron-Distal3.424017.03963K562GRWD1
chr5157285936157286098-5'-UTR,CDS,intron-Distal3.5245417.03995K562DDX3X
chr5157286045157286124-5'-UTR,intron-Distal3.191304.72399HepG2DDX3X
chr5157217604157217661-5'-UTR,CDS,intron-Distal,intron-Proximal3.624346.46902HepG2U2AF2
chr5157221905157221973-CDS,intron-Distal,intron-Proximal5.6586312.89244HepG2PPIG
chr5157240117157240220-CDS,intron-Distal3.8105417.98372K562UCHL5
chr5157232898157232977-CDS,intron-Distal,intron-Proximal4.271868.39611HepG2GRWD1
chr5157244457157244529-CDS,intron-Distal4.424065.82083HepG2GRWD1
chr5157218869157218901-CDS,intron-Distal,intron-Proximal4.039795.71420K562RBM15
chr5157240068157240129-CDS,intron-Distal,intron-Proximal3.341833.09866HepG2FXR2
chr5157244455157244491-CDS,intron-Distal4.436844.95909K562BUD13
chr5157221908157221943-CDS,intron-Distal3.220584.30396K562UCHL5
chr5157232932157232973-CDS,intron-Distal,intron-Proximal4.062303.53829K562MTPAP
chr5157240055157240117-CDS,intron-Distal,intron-Proximal3.363487.47194HepG2GRWD1
chr5157232873157232941-CDS,intron-Distal,intron-Proximal3.909924.65332HepG2ZNF800
chr5157232981157233046-CDS,intron-Distal,intron-Proximal3.665306.67313HepG2BCLAF1
chr5157241242157241301-CDS,intron-Distal4.126768.94445HepG2BCLAF1
chr5157244485157244541-CDS,intron-Distal3.051323.47139K562GRWD1
chr5157240112157240203-CDS,intron-Distal3.078823.85056K562TRA2A
chr5157240056157240117-CDS,intron-Distal,intron-Proximal3.4628715.92841K562UCHL5
chr5157241235157241302-CDS,intron-Distal,intron-Proximal4.776476.73025HepG2GRWD1
chr5157236763157236833-CDS,intron-Distal,intron-Proximal3.037403.05068HepG2U2AF2
chr5157232954157233026-CDS,intron-Distal,intron-Proximal4.126117.88838K562IGF2BP2
chr5157243741157243800-CDS,intron-Distal,intron-Proximal4.618726.76290HepG2GRWD1
chr5157232872157232898-CDS,intron-Distal,intron-Proximal4.281364.94878HepG2GRWD1
chr5157236635157236644-CDS,intron-Distal,intron-Proximal3.052156.17838K562ZNF622
chr5157243740157243817-CDS,intron-Distal,intron-Proximal3.2927912.51870K562ZNF622
chr5157236644157236685-CDS,intron-Distal3.296368.14373K562ZNF622
chr5157240123157240213-CDS,intron-Distal3.841569.74534HepG2BCLAF1
chr5157232941157233041-CDS,intron-Distal,intron-Proximal3.031344.99688K562PUM1
chr5157232884157232972-CDS,intron-Distal,intron-Proximal3.404277.58409K562UCHL5
chr5157221946157222023-CDS,intron-Distal,intron-Proximal3.4664113.56120K562SF3B4
chr5157240062157240127-CDS,intron-Distal,intron-Proximal4.1979422.80504K562ZNF622
chr5157241280157241303-CDS,intron-Distal,intron-Proximal3.065604.30558K562UCHL5
chr5157232883157232941-CDS,intron-Distal3.346363.53688K562PUM1
chr5157244463157244533-CDS,intron-Distal3.864343.46958K562YBX3
chr5157243741157243827-CDS,intron-Distal,intron-Proximal3.477587.85158K562UCHL5
chr5157232831157232906-CDS,intron-Distal,intron-Proximal3.250586.29405HepG2PRPF8
chr5157241207157241280-CDS,intron-Distal3.254186.46183K562UCHL5
chr5157240064157240119-CDS,intron-Distal,intron-Proximal3.031826.35565K562GRWD1
chr5157218901157218945-CDS,intron-Distal,intron-Proximal3.578195.58962K562RBM15
chr5157232912157233037-CDS,intron-Distal,intron-Proximal4.288983.31982HepG2IGF2BP1
chr5157241219157241253-CDS,intron-Distal3.446865.23038K562ZNF622
chr5157240065157240123-CDS,intron-Distal,intron-Proximal4.4190211.55759HepG2BCLAF1
chr5157233048157233119-CDS,intron-Distal,intron-Proximal3.3883811.99332K562UCHL5
chr5157218672157218736-CDS,intron-Distal,intron-Proximal4.358954.16174HepG2PRPF8
chr5157232972157233048-CDS,intron-Distal,intron-Proximal4.5840413.06301K562UCHL5
chr5157240117157240207-CDS,intron-Distal3.204286.63825HepG2GRWD1
chr5157243741157243819-CDS,intron-Distal,intron-Proximal3.415547.02567HepG2BCLAF1
chr5157240127157240232-CDS,intron-Distal3.1211216.08490K562ZNF622
chr5157236762157236813-CDS,intron-Distal3.300187.93618K562UCHL5
chr5157224045157224162-intron-Distal3.220303.46531K562KHSRP
chr5157217375157217485-intron-Distal3.225477.07900HepG2PTBP1
chr5157217401157217492-intron-Distal4.199133.21228K562TIA1
chr5157285850157285902-intron-Distal3.738114.76597HepG2EFTUD2
chr5157285781157285825-intron-Distal5.516147.24749HepG2EFTUD2
chr5157218592157218673-intron-Distal,intron-Proximal3.997533.48768HepG2KHSRP
chr5157217487157217563-intron-Distal,intron-Proximal3.995954.72639K562KHSRP
chr5157236928157237014-intron-Distal3.827804.72639K562KHSRP
chr5157225556157225594-intron-Distal3.080365.40698K562KHSRP
chr5157241979157242047-intron-Distal3.773923.03357HepG2HNRNPC
chr5157217421157217483-intron-Distal4.796765.05386K562PTBP1
chr5157225422157225598-intron-Distal3.119493.31157HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLINT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLINT1 is not available on ENCORE database.

  • 64 RBPs can affect the levels of CLINT1.  








The Knockdown/knockout RNA-Seq assay for CLINT1 is not available on ENCORE database.





64 RBPs can affect the gene expression of CLINT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLINT1ENSG00000113282.91500.816701993.92700-0.409907.732306.81910HepG2ACO1
CLINT1ENSG00000113282.91347.183301744.17890-0.372602.991901.95760HepG2ADAR
CLINT1ENSG00000113282.91357.513202536.71880-0.9020010.550609.57850HepG2AKAP1
CLINT1ENSG00000113282.91730.328502003.35100-0.211402.227701.53180HepG2AKAP8L
CLINT1ENSG00000113282.91125.517401695.61000-0.591205.282203.97770HepG2BCCIP
CLINT1ENSG00000113282.91648.159503229.13140-0.9703018.9160017.55870HepG2BOP1
CLINT1ENSG00000113282.91685.861501993.56100-0.241903.374202.65240HepG2CKAP4
CLINT1ENSG00000113282.92295.014802964.58130-0.369302.443301.79120HepG2CPSF6
CLINT1ENSG00000113282.91824.184202288.52470-0.327202.783201.67550HepG2CPSF7
CLINT1ENSG00000113282.91909.301102430.14280-0.348002.491101.89470HepG2DDX3X
CLINT1ENSG00000113282.91428.448402087.17050-0.547104.659603.87640HepG2DDX6
CLINT1ENSG00000113282.91602.757901907.66520-0.251302.878402.18840HepG2DKC1
CLINT1ENSG00000113282.92608.578703228.62240-0.307704.676003.93200HepG2ETF1
CLINT1ENSG00000113282.91383.651802075.68560-0.585105.303804.39520HepG2G3BP1
CLINT1ENSG00000113282.91614.377801972.26750-0.288902.288401.65260HepG2HNRNPC
CLINT1ENSG00000113282.91872.282202353.26850-0.329906.520005.52850HepG2HNRNPL
CLINT1ENSG00000113282.91431.104001959.22610-0.453208.518707.49740HepG2HNRNPU
CLINT1ENSG00000113282.92224.078003301.07330-0.569704.918603.80050HepG2LARP4
CLINT1ENSG00000113282.92457.895903270.56730-0.412102.246101.37880HepG2MTPAP
CLINT1ENSG00000113282.91310.120702561.61540-0.9674027.8964025.67180HepG2NOL12
CLINT1ENSG00000113282.91452.874501747.46870-0.266402.722401.99000HepG2PPIL4
CLINT1ENSG00000113282.91846.607602398.58290-0.377304.932604.13470HepG2QKI
CLINT1ENSG00000113282.92251.078102831.58680-0.331003.125002.21820HepG2RBM15
CLINT1ENSG00000113282.92045.024902464.82330-0.269403.366102.78200HepG2NELFE
CLINT1ENSG00000113282.91805.043302481.80260-0.459403.532502.77650HepG2RPLP0
CLINT1ENSG00000113282.91946.905902925.00390-0.587304.714403.81980HepG2SF3A3
CLINT1ENSG00000113282.91697.504002034.66210-0.261404.096903.33980HepG2SMN1
CLINT1ENSG00000113282.93136.146802406.801100.381807.786707.08650HepG2SRSF1
CLINT1ENSG00000113282.92059.073802414.24850-0.229602.913202.27130HepG2SRSF5
CLINT1ENSG00000113282.91863.119802263.72010-0.281002.366701.71930HepG2SRSF7
CLINT1ENSG00000113282.91566.475901958.09170-0.321904.768004.08070HepG2SRSF9
CLINT1ENSG00000113282.91808.551202646.33780-0.5492013.7842012.81380HepG2SSB
CLINT1ENSG00000113282.9937.898401277.15570-0.445402.783601.67880HepG2STIP1
CLINT1ENSG00000113282.91535.106101903.65770-0.310403.132402.60560HepG2TIAL1
CLINT1ENSG00000113282.91657.848401920.77870-0.212402.232401.71500HepG2TRIM56
CLINT1ENSG00000113282.9736.62020980.34710-0.412402.955702.17380HepG2UCHL5
CLINT1ENSG00000113282.92210.025102594.03160-0.231103.113102.38080HepG2UPF1
CLINT1ENSG00000113282.91028.406301519.57740-0.563303.638402.47600HepG2UPF2
CLINT1ENSG00000113282.92123.413902666.29890-0.328504.954103.59200HepG2UTP18
CLINT1ENSG00000113282.91959.519102504.43500-0.354006.080005.25080HepG2UTP3
CLINT1ENSG00000113282.91135.338601633.69080-0.525005.012804.04550HepG2XRN2
CLINT1ENSG00000113282.91770.072101997.73700-0.174601.958601.37830HepG2ZC3H8
CLINT1ENSG00000113282.91651.708702852.93770-0.7885034.8150033.43790HepG2ZNF622
CLINT1ENSG00000113282.92147.096002490.00200-0.213802.481301.57560K562BCLAF1
CLINT1ENSG00000113282.92961.626004234.35770-0.515806.221104.90150K562BOP1
CLINT1ENSG00000113282.93634.969404359.26670-0.262102.727701.56260K562CCDC124
CLINT1ENSG00000113282.94235.879004874.75730-0.202702.327001.32080K562CPEB4
CLINT1ENSG00000113282.92938.401204502.39230-0.6157012.0036010.35910K562CPSF6
CLINT1ENSG00000113282.94889.634505811.13230-0.249103.488502.43660K562EIF4G2
CLINT1ENSG00000113282.93190.563404176.55810-0.388503.816002.80990K562FIP1L1
CLINT1ENSG00000113282.93381.041304580.97070-0.438204.739203.61740K562FMR1
CLINT1ENSG00000113282.93069.123203882.73950-0.339202.794301.87500K562FTO
CLINT1ENSG00000113282.92305.900401908.095200.273102.774101.43240K562FUS
CLINT1ENSG00000113282.93110.566104571.97870-0.555609.268907.86220K562GRSF1
CLINT1ENSG00000113282.91746.770202705.55150-0.6312010.428509.32780K562HNRNPC
CLINT1ENSG00000113282.91968.004902415.92480-0.295802.535601.44950K562HNRNPF
CLINT1ENSG00000113282.94418.259405662.78440-0.358003.587202.68580K562HSPD1
CLINT1ENSG00000113282.93466.782004196.01250-0.275402.516001.68470K562METAP2
CLINT1ENSG00000113282.92813.572003517.68630-0.322206.109204.94630K562MTPAP
CLINT1ENSG00000113282.93343.175203908.48420-0.225404.839203.89010K562NSUN2
CLINT1ENSG00000113282.93542.993704740.95400-0.420204.627603.52770K562PPIG
CLINT1ENSG00000113282.91914.045302425.77250-0.341803.313902.31110K562PSIP1
CLINT1ENSG00000113282.94896.339003764.290500.379203.964203.33110K562PUS1
CLINT1ENSG00000113282.92112.305103001.50680-0.506906.259604.92680K562RBM22
CLINT1ENSG00000113282.92171.946702612.95470-0.266702.346901.38910K562SRSF4
CLINT1ENSG00000113282.93353.898702607.427600.363104.519903.46370K562SYNCRIP
CLINT1ENSG00000113282.92340.320803105.57490-0.408203.924703.07510K562TARDBP
CLINT1ENSG00000113282.92504.557402995.66200-0.258302.477601.70920K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLINT1 is not available on ENCORE database.





27 RBPs can affect the splicing of CLINT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLINT1ENSG00000113282.9chr5-1572176071572176591572163701572165211572187101572188490.161000.000020.03250includedK562RPS3
SECLINT1ENSG00000113282.9chr5-1572176071572176591572163701572165211572187101572188490.118000.000020.00379includedK562XRCC6
SECLINT1ENSG00000113282.9chr5-157230657157230727157221905157221980157232873157233020-0.151000.000000.00000excludedK562AQR
SECLINT1ENSG00000113282.9chr5-1572176071572176591572163701572165211572187101572188490.151000.000000.00012includedK562SUPV3L1
SECLINT1ENSG00000113282.9chr5-157216370157216459157214609157215000157218710157218849-0.055000.000050.00124excludedK562PUS1
SECLINT1ENSG00000113282.9chr5-1572176071572176591572163701572165211572187101572188490.106000.000020.01333includedK562UCHL5
SECLINT1ENSG00000113282.9chr5-157216370157216575157212750157215000157218710157219003-0.096000.000000.00031excludedK562TARDBP
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.127000.000200.02320longerK562AGGF1
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.207000.000000.00012longerHepG2SF3A3
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.197000.000000.00173shorterHepG2HNRNPU
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.183000.000760.06285shorterHepG2HNRNPK
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.172000.000030.00439longerK562AKAP8L
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.265000.000000.00052shorterHepG2MATR3
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.109000.001140.04186longerK562U2AF2
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.302000.000000.00000shorterHepG2SRSF1
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.281000.000000.00000longerHepG2U2AF2
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.224000.000000.00133shorterHepG2HLTF
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.231000.000000.00002shorterHepG2TIAL1
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.224000.000000.00000longerK562AQR
A3SSCLINT1ENSG00000113282.9chr5-1572367261572369441572367261572368131572400701572402210.178000.000000.00000longerK562AQR
A3SSCLINT1ENSG00000113282.9chr5-1572437411572439211572437411572438381572444501572445550.078000.000000.00000longerK562AQR
A3SSCLINT1ENSG00000113282.9chr5-1572401141572402641572401141572402351572411921572413010.167000.000000.00000longerK562AQR
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.191000.000000.00000longerK562PUS1
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.162000.000000.00037longerK562UTP18
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.196000.000020.01902shorterHepG2HNRNPA1
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.230000.000000.00083shorterHepG2PCBP2
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.207000.000000.00000longerK562SF3B1
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.192000.000200.09550shorterHepG2DDX3X
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.207000.000330.01567longerHepG2U2AF1
A3SSCLINT1ENSG00000113282.9chr5-1572163701572165751572163701572165211572187101572190030.158000.000000.00069longerK562RBM15
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.170000.000040.02001shorterHepG2HNRNPC
A3SSCLINT1ENSG00000113282.9chr5-157216370157216575157216370157216521157218710157219003-0.243000.000000.00012shorterHepG2PCBP1
MXECLINT1ENSG00000113282.9chr5-157216370157216521157218710157219003157213298157215000157221905157223153-0.059000.003600.069472includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLINT1 is not avaliable on ENCORE database.