CALD1

General Information

Gene Name       : CALD1
Gene ID             : ENSG00000122786.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CALD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CALD1ENSG00000122786.190.060.060.06ENCSR000AEF
HepG2CALD1ENSG00000122786.1968.0076.8672.43ENCSR985KAT
K562CALD1ENSG00000122786.190.010.000.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CALD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CALD1 RNA is bound by 19 proteins.  







eCLIP assay for CALD1 is not avaliable on ENCORE database.





19 proteins are bound to CALD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7134635149134635219+3'-UTR,CDS3.770034.42173HepG2TRA2A
chr7134625841134625895+3'-UTR,CDS,intron-Proximal3.342126.19339HepG2BCLAF1
chr7134650056134650104+3'-UTR,CDS,intron-Proximal4.215048.80691HepG2GRWD1
chr7134625966134625990+3'-UTR,CDS,intron-Proximal3.961599.43524HepG2BCLAF1
chr7134642818134642838+3'-UTR,CDS,intron-Proximal4.369844.16554HepG2PPIG
chr7134644809134644862+3'-UTR,CDS3.171096.90893HepG2GRWD1
chr7134632423134632524+3'-UTR,CDS,intron-Proximal3.064724.05021HepG2SRSF1
chr7134632258134632371+3'-UTR,CDS,intron-Proximal3.6420313.09136HepG2BCLAF1
chr7134642818134642841+3'-UTR,CDS,intron-Proximal3.837605.28199HepG2GRWD1
chr7134635123134635222+3'-UTR,CDS,intron-Proximal4.762197.95374HepG2ZNF800
chr7134632257134632266+3'-UTR,CDS,intron-Proximal4.383459.28811HepG2GRWD1
chr7134632290134632336+3'-UTR,CDS3.495178.95239HepG2GRWD1
chr7134653351134653400+3'-UTR3.562385.10069HepG2GRWD1
chr7134642983134643042+3'-UTR,CDS,intron-Proximal3.7321810.64917HepG2BCLAF1
chr7134642835134642864+3'-UTR,CDS,intron-Proximal3.655627.66871HepG2BCLAF1
chr7134625883134625953+3'-UTR,CDS3.850277.35214HepG2ZNF800
chr7134645296134645326+3'-UTR,CDS4.363075.11007HepG2GRWD1
chr7134632429134632521+3'-UTR,CDS,intron-Proximal3.986883.21664HepG2UCHL5
chr7134618022134618155+3'-UTR,CDS,intron-Proximal4.415233.21539HepG2SRSF1
chr7134644724134644733+3'-UTR,CDS,intron-Proximal3.453934.02291HepG2GRWD1
chr7134642959134642983+3'-UTR,CDS,intron-Proximal4.320399.98400HepG2BCLAF1
chr7134618035134618151+3'-UTR,CDS,intron-Proximal4.396223.87318HepG2TRA2A
chr7134645283134645296+3'-UTR,CDS,intron-Proximal3.475663.79741HepG2GRWD1
chr7134635125134635218+3'-UTR,CDS6.2886617.05588HepG2BCLAF1
chr7134645352134645378+3'-UTR,CDS3.476134.24070HepG2GRWD1
chr7134635229134635268+3'-UTR,CDS,intron-Proximal3.754005.30739HepG2BUD13
chr7134625824134625926+3'-UTR,CDS,intron-Proximal4.500523.22248HepG2TRA2A
chr7134642957134642992+3'-UTR,CDS,intron-Proximal5.137205.38533HepG2ZNF800
chr7134642958134642996+3'-UTR,CDS,intron-Proximal3.947728.07380HepG2GRWD1
chr7134635124134635213+3'-UTR,CDS,intron-Proximal3.136765.00827HepG2FTO
chr7134635123134635151+3'-UTR,CDS,intron-Proximal4.168497.94477HepG2GRWD1
chr7134618035134618252+3'-UTR,CDS,intron-Distal,intron-Proximal4.6928620.21064HepG2BCLAF1
chr7134642857134642863+3'-UTR,CDS3.754043.80299HepG2GRWD1
chr7134644724134644735+3'-UTR,CDS,intron-Proximal3.291073.27569HepG2BCLAF1
chr7134635224134635265+3'-UTR,CDS4.042297.03378HepG2GRWD1
chr7134625880134625948+3'-UTR,CDS4.8859611.31039HepG2GRWD1
chr7134625948134625989+3'-UTR,CDS,intron-Proximal6.0137314.76330HepG2GRWD1
chr7134632480134632512+3'-UTR,CDS4.254046.84754HepG2GRWD1
chr7134632336134632372+3'-UTR,CDS4.008819.18313HepG2GRWD1
chr7134632372134632394+3'-UTR,CDS4.175406.62597HepG2GRWD1
chr7134625857134625950+3'-UTR,CDS3.297813.26927HepG2FXR2
chr7134618085134618154+3'-UTR,CDS,intron-Proximal4.271154.83483HepG2FXR2
chr7134632475134632521+3'-UTR,CDS,intron-Proximal4.341765.35688HepG2FTO
chr7134635151134635170+3'-UTR,CDS3.985629.41377HepG2GRWD1
chr7134650104134650137+3'-UTR,CDS4.802976.26332HepG2GRWD1
chr7134632361134632521+3'-UTR,CDS,intron-Proximal5.326135.58786HepG2TRA2A
chr7134635115134635214+3'-UTR,CDS,intron-Proximal3.4225613.45912HepG2AQR
chr7134642996134643042+3'-UTR,CDS,intron-Proximal3.936139.81646HepG2GRWD1
chr7134625806134625863+3'-UTR,CDS,intron-Proximal3.088803.70059HepG2U2AF2
chr7134645326134645352+3'-UTR,CDS4.314704.69071HepG2GRWD1
chr7134635124134635245+3'-UTR,CDS,intron-Proximal4.584545.88204HepG2FXR2
chr7134653090134653131+3'-UTR,CDS,intron-Distal,intron-Proximal3.046993.89474HepG2GRWD1
chr7134632512134632521+3'-UTR,CDS,intron-Proximal3.178514.89942HepG2GRWD1
chr7134635170134635224+3'-UTR,CDS4.768619.94686HepG2GRWD1
chr7134642992134643028+3'-UTR,CDS3.588233.46344HepG2ZNF800
chr7134632266134632290+3'-UTR,CDS4.8235913.11867HepG2GRWD1
chr7134625953134625991+3'-UTR,CDS,intron-Proximal3.465017.32816HepG2ZNF800
chr7134645284134645332+3'-UTR,CDS3.274864.74886HepG2BCLAF1
chr7134625895134625966+3'-UTR,CDS4.5584716.89728HepG2BCLAF1
chr7134644735134644807+3'-UTR,CDS3.254376.59678HepG2BCLAF1
chr7134576227134576344+5'-UTR,intron-Distal4.168254.99495HepG2UCHL5
chr7134576325134576425+5'-UTR,CDS,intron-Distal,intron-Proximal3.4168718.76571HepG2GRWD1
chr7134613517134613583+CDS3.3524710.30290HepG2GRWD1
chr7134613503134613517+CDS,intron-Proximal3.235536.39282HepG2GRWD1
chr7134617734134617783+CDS,intron-Distal,intron-Proximal4.347167.53418HepG2ZNF800
chr7134613601134613653+CDS,intron-Proximal3.119844.56843HepG2HLTF
chr7134617867134617929+CDS,intron-Proximal3.281905.12345HepG2GRWD1
chr7134617737134617783+CDS,intron-Distal,intron-Proximal4.6169415.12866HepG2GRWD1
chr7134613596134613654+CDS,intron-Proximal3.783736.80697HepG2ZNF800
chr7134613587134613653+CDS,intron-Proximal4.113203.21539HepG2SRSF1
chr7134617783134617858+CDS,intron-Distal,intron-Proximal5.2012216.98581HepG2GRWD1
chr7134613551134613652+CDS,intron-Proximal3.476374.35304HepG2AGGF1
chr7134617746134617900+CDS,intron-Distal,intron-Proximal3.575724.57766HepG2SRSF1
chr7134613583134613652+CDS,intron-Proximal5.2350917.90081HepG2GRWD1
chr7134617777134617841+CDS,intron-Distal4.163474.30187HepG2UCHL5
chr7134613591134613654+CDS,intron-Proximal3.079024.02165HepG2FTO
chr7134625406134625475+intron-Distal3.134786.73159HepG2U2AF2
chr7134625042134625153+intron-Distal3.876788.18013HepG2HNRNPL
chr7134577877134577981+intron-Distal3.079175.60277HepG2PTBP1
chr7134618853134618937+intron-Distal,intron-Proximal3.014093.75693HepG2HLTF
chr7134649902134649969+intron-Distal,intron-Proximal4.288965.74787HepG2CSTF2
chr7134619572134619626+intron-Distal5.1198224.98564HepG2XPO5
chr7134625397134625443+intron-Distal4.161363.41738HepG2PTBP1
chr7134577604134577705+intron-Distal3.320244.74917HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CALD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CALD1 is not available on ENCORE database.

  • 84 RBPs can affect the levels of CALD1.  








The Knockdown/knockout RNA-Seq assay for CALD1 is not available on ENCORE database.





84 RBPs can affect the gene expression of CALD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CALD1ENSG00000122786.153665.342104301.98900-0.231103.834903.14070HepG2ACO1
CALD1ENSG00000122786.151418.451803813.86880-1.4269012.7353010.70500HepG2AKAP8
CALD1ENSG00000122786.154586.958003548.438600.370303.189102.34550HepG2ASCC1
CALD1ENSG00000122786.154238.694905480.42300-0.370706.448105.46950HepG2AUH
CALD1ENSG00000122786.152449.687903659.35210-0.579004.647603.43250HepG2BCCIP
CALD1ENSG00000122786.154576.610905504.14690-0.266202.268401.72090HepG2BOP1
CALD1ENSG00000122786.155999.713404350.922900.463507.973206.76070HepG2CALR
CALD1ENSG00000122786.153621.479906697.30030-0.8870011.128509.20140HepG2CCAR1
CALD1ENSG00000122786.151085.999202903.75490-1.4189018.0269016.13800HepG2CNOT7
CALD1ENSG00000122786.152196.864403009.38880-0.454008.162506.43140HepG2YBX3
CALD1ENSG00000122786.155564.221403351.137000.7314013.9416012.56050HepG2DDX21
CALD1ENSG00000122786.154787.954503277.988500.546509.492807.83430HepG2DDX24
CALD1ENSG00000122786.154441.645103608.632800.299502.688601.40780HepG2DDX47
CALD1ENSG00000122786.152599.096203597.74370-0.469103.398302.55160HepG2DDX55
CALD1ENSG00000122786.155692.428104115.860900.4677012.5092011.28430HepG2DKC1
CALD1ENSG00000122786.152073.892402955.08670-0.5109010.322009.03580HepG2DNAJC21
CALD1ENSG00000122786.154363.880403390.497700.364003.416002.39890HepG2EEF2
CALD1ENSG00000122786.154692.507703163.702600.5686010.205008.39660HepG2EIF3G
CALD1ENSG00000122786.152427.917903749.23850-0.626906.470405.49230HepG2EIF4A3
CALD1ENSG00000122786.158012.469703650.221601.1342016.2575014.68230HepG2EIF4B
CALD1ENSG00000122786.157794.721604964.458700.6508023.8123021.87500HepG2EIF4G1
CALD1ENSG00000122786.155297.651706291.99660-0.248202.505901.92960HepG2ETF1
CALD1ENSG00000122786.155561.890304203.891600.403704.221703.18930HepG2EWSR1
CALD1ENSG00000122786.151664.287202459.83480-0.563709.459307.28000HepG2FAM120A
CALD1ENSG00000122786.153518.100705366.73870-0.609206.471405.34160HepG2FIP1L1
CALD1ENSG00000122786.153702.160902994.778900.305802.545801.32510HepG2FKBP4
CALD1ENSG00000122786.153035.399502026.633900.582708.974107.60040HepG2FUBP3
CALD1ENSG00000122786.155309.537003725.053000.511205.880504.57120HepG2G3BP2
CALD1ENSG00000122786.153309.676202450.662400.433404.234903.11410HepG2GEMIN5
CALD1ENSG00000122786.153283.858604107.22240-0.322805.823904.46710HepG2HDGF
CALD1ENSG00000122786.154203.570002983.395700.494606.775405.83060HepG2HNRNPA1
CALD1ENSG00000122786.153684.111404624.73960-0.328106.112004.81580HepG2HNRNPA2B1
CALD1ENSG00000122786.152472.118003318.43160-0.424804.902703.99950HepG2HNRNPC
CALD1ENSG00000122786.153500.706203967.85010-0.180701.949801.34090HepG2HNRNPF
CALD1ENSG00000122786.153839.365904584.22410-0.255805.847304.89840HepG2HNRNPL
CALD1ENSG00000122786.157824.364705466.649000.517206.552705.62940HepG2HNRNPLL
CALD1ENSG00000122786.152850.582703703.49940-0.377604.256403.10160HepG2HNRNPM
CALD1ENSG00000122786.152469.222403296.49540-0.416909.041007.99250HepG2HNRNPU
CALD1ENSG00000122786.152667.121504154.31410-0.639303.815802.36960HepG2HSPD1
CALD1ENSG00000122786.157463.994303566.882301.0652022.3540020.65410HepG2IGF2BP2
CALD1ENSG00000122786.155383.127103347.140200.685402.473701.55100HepG2IGF2BP3
CALD1ENSG00000122786.154927.777903587.569600.457803.370202.24930HepG2KHSRP
CALD1ENSG00000122786.156517.671403783.845300.7844012.0562010.72140HepG2MAGOH
CALD1ENSG00000122786.155530.259103805.071500.539305.408604.55100HepG2MATR3
CALD1ENSG00000122786.153597.451904344.56750-0.272202.280601.54350HepG2MSI2
CALD1ENSG00000122786.153961.923004990.08530-0.332903.521302.66170HepG2NOL12
CALD1ENSG00000122786.158583.538804847.098800.8244017.0338015.36350HepG2NSUN2
CALD1ENSG00000122786.155052.888903468.702800.542605.944004.89700HepG2PABPC4
CALD1ENSG00000122786.152171.071403263.02180-0.5878015.8304014.09120HepG2PARN
CALD1ENSG00000122786.156011.987604051.704100.569204.064202.81970HepG2PCBP2
CALD1ENSG00000122786.153796.727003348.250200.181202.051101.37720HepG2PRPF4
CALD1ENSG00000122786.153708.680802776.235200.417704.408303.41350HepG2PRPF8
CALD1ENSG00000122786.152508.536403629.38580-0.5329013.2799012.26020HepG2PTBP1
CALD1ENSG00000122786.153990.417205056.42150-0.3416010.201709.21300HepG2PUM1
CALD1ENSG00000122786.156107.706604381.868000.4790015.5006014.24930HepG2PUS1
CALD1ENSG00000122786.156268.573105258.999500.253203.132802.59030HepG2RBM22
CALD1ENSG00000122786.155411.736103567.253600.6012011.3301010.02480HepG2RBM25
CALD1ENSG00000122786.153156.830403997.36790-0.340602.658601.68560HepG2RBM27
CALD1ENSG00000122786.156024.288204039.067800.5767018.7596017.59480HepG2NELFE
CALD1ENSG00000122786.154971.054003762.006200.401909.603908.55780HepG2RECQL
CALD1ENSG00000122786.155490.475804274.058800.361203.928903.13820HepG2RPLP0
CALD1ENSG00000122786.151740.879702935.70120-0.7539028.5581026.79960HepG2SAFB2
CALD1ENSG00000122786.155653.723604567.103400.307807.539006.46740HepG2SLBP
CALD1ENSG00000122786.152055.547303985.08490-0.9551011.324209.32570HepG2SMNDC1
CALD1ENSG00000122786.154209.263506020.65650-0.516403.338002.47510HepG2SNRNP70
CALD1ENSG00000122786.156515.340803943.978400.7241033.2465032.00420HepG2SRSF1
CALD1ENSG00000122786.152866.365005821.96580-1.0223015.5774013.11860HepG2SRSF3
CALD1ENSG00000122786.153198.225603898.21510-0.285504.294203.45560HepG2SRSF7
CALD1ENSG00000122786.154151.394103208.704900.371508.513907.63910HepG2SRSF9
CALD1ENSG00000122786.158085.892705157.445800.6487027.6703026.42710HepG2SSB
CALD1ENSG00000122786.156366.865003581.749700.8298013.3841012.08240HepG2SUPV3L1
CALD1ENSG00000122786.152947.921103545.22180-0.266203.259902.65830HepG2TAF15
CALD1ENSG00000122786.154082.748505327.81190-0.384004.051903.19370HepG2TARDBP
CALD1ENSG00000122786.154200.281103257.342200.366704.883503.78360HepG2TIA1
CALD1ENSG00000122786.153817.883303203.328400.253102.716902.22010HepG2TIAL1
CALD1ENSG00000122786.152251.023903231.78440-0.5217013.6008012.48710HepG2TRIM56
CALD1ENSG00000122786.153897.928404653.43250-0.255602.610701.76390HepG2TUFM
CALD1ENSG00000122786.155525.658304591.511300.267102.010301.46580HepG2U2AF1
CALD1ENSG00000122786.151680.861402116.02150-0.332202.029601.37880HepG2UCHL5
CALD1ENSG00000122786.154695.767905500.06360-0.228103.900603.09250HepG2UPF1
CALD1ENSG00000122786.153888.276505310.07940-0.4496012.4610011.32990HepG2UTP3
CALD1ENSG00000122786.155071.331606049.00250-0.254306.070805.34310HepG2ZNF622
CALD1ENSG00000122786.150.0000013.49520-99999.999994.373703.49060K562UPF1
CALD1ENSG00000122786.151.0042011.54720-3.523502.353901.54540K562WDR3
CALD1ENSG00000122786.151.5126012.00920-2.989102.236101.46850K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CALD1 is not available on ENCORE database.





18 RBPs can affect the splicing of CALD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.063000.000020.01719includedHepG2NKRF
SECALD1ENSG00000122786.15chr7+134620438134620516134617738134618141134625842134625988-0.063000.000210.01817excludedHepG2RBM22
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.110000.000000.01437includedHepG2TROVE2
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.068000.000010.00125includedHepG2TBRG4
SECALD1ENSG00000122786.15chr7+134620438134620516134617738134618141134625842134625988-0.089000.000000.00011excludedHepG2U2AF2
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.204000.000000.00000includedHepG2AKAP1
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.174000.000000.00000includedHepG2DDX3X
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.205000.000000.00000includedHepG2NCBP2
SECALD1ENSG00000122786.15chr7+1346475701346476851346452831346453791346500561346501370.177000.000000.00000includedHepG2PTBP1
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.073000.001380.06561includedHepG2PTBP1
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.138000.000000.00000includedHepG2MATR3
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.090000.000000.00029includedHepG2DDX6
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.098000.000000.00007includedHepG2PCBP2
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.056000.004560.08256includedHepG2SRSF1
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.095000.000000.00003includedHepG2SF3A3
SECALD1ENSG00000122786.15chr7+1346204381346205161346177381346181411346258421346259880.113000.000000.00001includedHepG2IGF2BP3
SECALD1ENSG00000122786.15chr7+134620438134620516134617738134618141134625842134625988-0.061000.000140.00907excludedHepG2HNRNPU
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346204381346205160.314000.000000.00004longerHepG2U2AF2
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346258421346259880.065000.000000.00240longerHepG2NCBP2
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346258421346259880.053000.000000.00044longerHepG2SRSF1
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346258421346259880.068000.000000.00001longerHepG2PCBP2
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346258421346259880.072000.000000.00005longerHepG2MATR3
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346258421346259880.053000.000070.03396longerHepG2G3BP1
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346258421346259880.079000.000000.00003longerHepG2PTBP1
A5SSCALD1ENSG00000122786.15chr7+1346177381346188281346177381346181411346204381346205160.245000.000000.00110longerHepG2FTO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CALD1 is not avaliable on ENCORE database.