CALD1

General Information

Gene Name : CALD1
Gene ID : ENSG00000122786.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CALD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CALD1	ENSG00000122786.19	0.06	0.06	0.06	ENCSR000AEF
HepG2	CALD1	ENSG00000122786.19	68.00	76.86	72.43	ENCSR985KAT
K562	CALD1	ENSG00000122786.19	0.01	0.00	0.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CALD1 is not avaliable on ENCORE database.

Proteins bound to RNA

CALD1 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for CALD1 is not avaliable on ENCORE database.

19 proteins are bound to CALD1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	134619572	134619626	+	intron-Distal	5.11982	24.98564	HepG2	XPO5
chr7	134618035	134618252	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.69286	20.21064	HepG2	BCLAF1
chr7	134576325	134576425	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.41687	18.76571	HepG2	GRWD1
chr7	134613583	134613652	+	CDS,intron-Proximal	5.23509	17.90081	HepG2	GRWD1
chr7	134635125	134635218	+	3'-UTR,CDS	6.28866	17.05588	HepG2	BCLAF1
chr7	134617783	134617858	+	CDS,intron-Distal,intron-Proximal	5.20122	16.98581	HepG2	GRWD1
chr7	134625895	134625966	+	3'-UTR,CDS	4.55847	16.89728	HepG2	BCLAF1
chr7	134617737	134617783	+	CDS,intron-Distal,intron-Proximal	4.61694	15.12866	HepG2	GRWD1
chr7	134625948	134625989	+	3'-UTR,CDS,intron-Proximal	6.01373	14.76330	HepG2	GRWD1
chr7	134635115	134635214	+	3'-UTR,CDS,intron-Proximal	3.42256	13.45912	HepG2	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 84 entries

eCLIP assay for CALD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CALD1 is not available on ENCORE database.
84 RBPs can affect the levels of CALD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CALD1 is not available on ENCORE database.

84 RBPs can affect the gene expression of CALD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CALD1	ENSG00000122786.15	6515.34080	3943.97840	0.72410	33.24650	32.00420	HepG2	SRSF1
CALD1	ENSG00000122786.15	1740.87970	2935.70120	-0.75390	28.55810	26.79960	HepG2	SAFB2
CALD1	ENSG00000122786.15	8085.89270	5157.44580	0.64870	27.67030	26.42710	HepG2	SSB
CALD1	ENSG00000122786.15	7794.72160	4964.45870	0.65080	23.81230	21.87500	HepG2	EIF4G1
CALD1	ENSG00000122786.15	7463.99430	3566.88230	1.06520	22.35400	20.65410	HepG2	IGF2BP2
CALD1	ENSG00000122786.15	6024.28820	4039.06780	0.57670	18.75960	17.59480	HepG2	NELFE
CALD1	ENSG00000122786.15	1085.99920	2903.75490	-1.41890	18.02690	16.13800	HepG2	CNOT7
CALD1	ENSG00000122786.15	8583.53880	4847.09880	0.82440	17.03380	15.36350	HepG2	NSUN2
CALD1	ENSG00000122786.15	8012.46970	3650.22160	1.13420	16.25750	14.68230	HepG2	EIF4B
CALD1	ENSG00000122786.15	6107.70660	4381.86800	0.47900	15.50060	14.24930	HepG2	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CALD1 is not available on ENCORE database.

18 RBPs can affect the splicing of CALD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.11000	0.01437	included	HepG2	TROVE2
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	-0.08900	0.00011	excluded	HepG2	U2AF2
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.20400	0.00000	included	HepG2	AKAP1
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.17400	0.00000	included	HepG2	DDX3X
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.20500	0.00000	included	HepG2	NCBP2
SE	CALD1	ENSG00000122786.15	chr7	+	134647570	134647685	134645283	134645379	134650056	134650137	0.17700	0.00000	included	HepG2	PTBP1
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.13800	0.00000	included	HepG2	MATR3
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.09000	0.00029	included	HepG2	DDX6
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.09800	0.00007	included	HepG2	PCBP2
SE	CALD1	ENSG00000122786.15	chr7	+	134620438	134620516	134617738	134618141	134625842	134625988	0.09500	0.00003	included	HepG2	SF3A3

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CALD1

General Information

Functions

Localization

Domains (AlphaFold: CALD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CALD1 is not avaliable on ENCORE database.

19 proteins are bound to CALD1 RNA:

eCLIP assay for CALD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CALD1 is not available on ENCORE database.

84 RBPs can affect the gene expression of CALD1 :

The Knockdown/knockout RNA-Seq assay for CALD1 is not available on ENCORE database.

18 RBPs can affect the splicing of CALD1 :

The Knockdown/knockout RNA-Seq assay for CALD1 is not avaliable on ENCORE database.