C4BPB

General Information

Gene Name       : C4BPB
Gene ID             : ENSG00000123843.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C4BPB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C4BPBENSG00000123843.120.040.280.16ENCSR000AEF
HepG2C4BPBENSG00000123843.1265.5075.2070.35ENCSR985KAT
K562C4BPBENSG00000123843.120.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C4BPB is not avaliable on ENCORE database.



Proteins bound to RNA
  • C4BPB RNA is bound by 12 proteins.  







eCLIP assay for C4BPB is not avaliable on ENCORE database.





12 proteins are bound to C4BPB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1207273222207273310+3'-UTR,CDS4.080477.68770HepG2ZC3H11A
chr1207264987207265019+CDS,intron-Proximal3.400506.16769HepG2SND1
chr1207268624207268687+CDS,intron-Distal,intron-Proximal4.201344.50744HepG2U2AF2
chr1207273128207273173+CDS,intron-Proximal3.460404.57751HepG2U2AF2
chr1207263650207263678+CDS,intron-Proximal4.123683.16051HepG2PPIG
chr1207269856207269905+CDS,intron-Proximal3.557646.35467HepG2U2AF1
chr1207269811207269896+CDS,intron-Proximal4.1613117.38659HepG2SF3A3
chr1207263644207263686+CDS,intron-Proximal3.362305.40232HepG2U2AF2
chr1207269864207269906+CDS,intron-Proximal3.680444.66892HepG2SND1
chr1207271544207271612+CDS,intron-Proximal3.111068.74848HepG2PPIG
chr1207271548207271612+CDS,intron-Proximal4.2250910.24470HepG2BCLAF1
chr1207269797207269878+CDS,intron-Proximal5.215238.49281HepG2SF3B4
chr1207271562207271609+CDS3.150824.75490HepG2GRWD1
chr1207264988207265053+CDS,intron-Proximal5.3710610.06265HepG2PPIG
chr1207271500207271570+CDS3.326056.23251HepG2SND1
chr1207263772207263827+CDS,intron-Proximal4.378378.98365HepG2PPIG
chr1207265088207265167+CDS,intron-Proximal4.5724814.75354HepG2SND1
chr1207269855207269907+CDS,intron-Proximal4.7211021.63933HepG2U2AF2
chr1207269384207269401+intron-Distal3.955363.35850HepG2TIAL1
chr1207269706207269769+intron-Distal,intron-Proximal3.385396.79180HepG2U2AF2
chr1207269426207269504+intron-Distal3.635234.64467HepG2HNRNPL
chr1207269549207269567+intron-Distal4.163295.42334HepG2QKI
chr1207266643207266714+intron-Distal4.285194.45537HepG2HNRNPL
chr1207269436207269476+intron-Distal3.8926410.83393HepG2U2AF2
chr1207265366207265426+intron-Distal3.113746.76365HepG2HNRNPL
chr1207269686207269762+intron-Distal4.5230616.09826HepG2QKI
chr1207269386207269457+intron-Distal3.104394.45299HepG2QKI
chr1207269567207269686+intron-Distal7.3253076.72421HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C4BPB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C4BPB is not available on ENCORE database.

  • 101 RBPs can affect the levels of C4BPB.  








The Knockdown/knockout RNA-Seq assay for C4BPB is not available on ENCORE database.





101 RBPs can affect the gene expression of C4BPB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C4BPBENSG00000123843.81882.593901325.837400.505704.574103.38630HepG2ABCF1
C4BPBENSG00000123843.8484.555701499.27590-1.6295073.2003071.17080HepG2ACO1
C4BPBENSG00000123843.8380.557602734.42680-2.8451088.6162086.33780HepG2AKAP1
C4BPBENSG00000123843.82021.151401506.215900.424107.284006.10560HepG2AKAP8L
C4BPBENSG00000123843.81840.986201196.314000.621808.245505.97160HepG2ATP5C1
C4BPBENSG00000123843.82656.020502252.005200.238002.899502.19900HepG2AUH
C4BPBENSG00000123843.81756.903601067.900400.718208.272806.82430HepG2BCLAF1
C4BPBENSG00000123843.81322.64140683.826300.9516015.1442013.89870HepG2BOP1
C4BPBENSG00000123843.81184.49640959.645900.303602.352601.63770HepG2CALR
C4BPBENSG00000123843.81981.563101498.825000.402705.343304.47500HepG2CKAP4
C4BPBENSG00000123843.81046.47430627.770900.737108.079506.95460HepG2CPSF6
C4BPBENSG00000123843.8981.14570759.191900.369902.938001.83150HepG2CSTF2
C4BPBENSG00000123843.81465.672701987.17960-0.439206.860005.93420HepG2CELF1
C4BPBENSG00000123843.83248.719302136.564800.6045022.3402020.60010HepG2DAZAP1
C4BPBENSG00000123843.81605.966301386.557900.211802.416101.63110HepG2DDX19B
C4BPBENSG00000123843.81856.600401304.475800.509106.726605.30990HepG2DDX24
C4BPBENSG00000123843.82200.690801130.606000.9608012.339609.92870HepG2DDX27
C4BPBENSG00000123843.82109.880301578.158000.418804.190602.61650HepG2DDX47
C4BPBENSG00000123843.8737.21030956.05580-0.375003.060201.63610HepG2DDX52
C4BPBENSG00000123843.81194.27710712.886300.744304.362403.14750HepG2DDX59
C4BPBENSG00000123843.81354.039501064.799700.346602.566601.58700HepG2DDX5
C4BPBENSG00000123843.82512.903001090.611901.2041030.3941027.86860HepG2DHX30
C4BPBENSG00000123843.81844.007801434.368400.362305.214704.33810HepG2DKC1
C4BPBENSG00000123843.81748.215201120.869800.6412011.3695010.14720HepG2DNAJC2
C4BPBENSG00000123843.81531.358101140.667500.424803.046902.08120HepG2EEF2
C4BPBENSG00000123843.82795.779802163.105900.370002.932502.32220HepG2EIF2S1
C4BPBENSG00000123843.83735.164102390.528500.643707.013605.99680HepG2EIF4A3
C4BPBENSG00000123843.81080.913002327.43440-1.1065013.4853012.03210HepG2EIF4B
C4BPBENSG00000123843.84191.392302107.973900.9915044.8036042.31680HepG2EIF4G1
C4BPBENSG00000123843.83523.854202019.282300.8032014.2228012.48310HepG2EIF4G2
C4BPBENSG00000123843.8754.325301338.75880-0.827608.617207.34720HepG2FIP1L1
C4BPBENSG00000123843.81480.340701005.725200.557605.053903.37510HepG2FKBP4
C4BPBENSG00000123843.81735.520302411.81540-0.474804.441203.57920HepG2FXR1
C4BPBENSG00000123843.81646.13550711.575501.2099019.3208017.78770HepG2GPKOW
C4BPBENSG00000123843.81922.569801240.595600.631906.171903.50830HepG2GRWD1
C4BPBENSG00000123843.81695.055101141.556600.570207.149706.18390HepG2HNRNPA1
C4BPBENSG00000123843.82529.639201963.632400.365306.115404.81880HepG2HNRNPA2B1
C4BPBENSG00000123843.81905.706501269.814500.585606.615305.58020HepG2HNRNPC
C4BPBENSG00000123843.81768.717001224.814100.530009.568608.33570HepG2HNRNPF
C4BPBENSG00000123843.82337.873301946.204200.264404.572503.72360HepG2HNRNPL
C4BPBENSG00000123843.81375.49850679.074301.0182015.2857013.97230HepG2HNRNPLL
C4BPBENSG00000123843.8642.82230923.63410-0.522905.275204.00770HepG2HNRNPM
C4BPBENSG00000123843.81388.652002161.24680-0.638205.647003.90720HepG2HSPD1
C4BPBENSG00000123843.82046.122401206.081500.7625014.3998012.88330HepG2IGF2BP1
C4BPBENSG00000123843.81083.149602134.20930-0.978504.667603.39990HepG2IGF2BP3
C4BPBENSG00000123843.81428.108701947.80480-0.447703.072701.80070HepG2KHDRBS1
C4BPBENSG00000123843.81827.077901313.584100.475903.636001.67740HepG2LSM11
C4BPBENSG00000123843.81269.864102426.18090-0.9340012.7606011.47780HepG2MATR3
C4BPBENSG00000123843.81062.49830692.680700.617103.804802.65620HepG2MTPAP
C4BPBENSG00000123843.81960.118002483.34800-0.341302.349701.76380HepG2NCBP2
C4BPBENSG00000123843.81768.689302118.62080-0.260402.454801.73930HepG2NOL12
C4BPBENSG00000123843.8859.80400602.166800.513704.176703.26260HepG2NSUN2
C4BPBENSG00000123843.8761.474801248.53100-0.7134011.275409.75870HepG2PARN
C4BPBENSG00000123843.81878.635102126.21480-0.178601.853401.33960HepG2PCBP1
C4BPBENSG00000123843.82081.950601368.840000.604904.171702.91320HepG2PCBP2
C4BPBENSG00000123843.81749.459601256.404600.477503.437401.56600HepG2PHF6
C4BPBENSG00000123843.83153.785801833.280000.782605.892503.70940HepG2PNPT1
C4BPBENSG00000123843.8832.261901125.07460-0.434905.155904.17770HepG2PPIL4
C4BPBENSG00000123843.8801.551401115.88900-0.477306.717805.57230HepG2PRPF4
C4BPBENSG00000123843.81573.55490932.259500.755109.411708.02280HepG2PRPF8
C4BPBENSG00000123843.81710.539602163.45360-0.338904.042603.40880HepG2PTBP1
C4BPBENSG00000123843.82834.042002022.448100.486705.097004.31790HepG2PUF60
C4BPBENSG00000123843.81273.343002146.96360-0.7537026.2920024.84140HepG2PUM1
C4BPBENSG00000123843.81200.109601527.09150-0.347605.013604.22830HepG2PUS1
C4BPBENSG00000123843.81767.734302343.17910-0.406605.775904.92120HepG2QKI
C4BPBENSG00000123843.81978.505601482.896600.415905.357704.21170HepG2RBM15
C4BPBENSG00000123843.8613.998702161.15650-1.8155078.7760076.77520HepG2RBM22
C4BPBENSG00000123843.81489.895702126.54580-0.513306.998205.96530HepG2RBM25
C4BPBENSG00000123843.81380.080801974.42720-0.516703.425501.72720HepG2RBM47
C4BPBENSG00000123843.81314.831402407.75730-0.8728028.1569026.80220HepG2NELFE
C4BPBENSG00000123843.81318.036302242.42410-0.7667022.2900020.83100HepG2RECQL
C4BPBENSG00000123843.82241.756901319.586400.7644011.7713010.53260HepG2RPLP0
C4BPBENSG00000123843.82011.562701297.327700.632704.367003.18760HepG2RPS10
C4BPBENSG00000123843.81774.79700922.217100.9444012.7271011.24380HepG2RRP9
C4BPBENSG00000123843.81391.599901123.320900.308904.027603.27530HepG2SAFB2
C4BPBENSG00000123843.81649.49650904.277300.8671012.8567010.90740HepG2SERBP1
C4BPBENSG00000123843.8808.323401424.63240-0.817607.286706.15420HepG2SF3A3
C4BPBENSG00000123843.81571.844202252.52320-0.519109.907608.89030HepG2SF3B4
C4BPBENSG00000123843.8642.228301309.93840-1.0283021.6227020.08790HepG2SMN1
C4BPBENSG00000123843.81010.84610747.861500.434602.074201.40180HepG2SNRNP70
C4BPBENSG00000123843.81193.110002440.90530-1.0327043.4385042.07810HepG2SRFBP1
C4BPBENSG00000123843.83135.287302351.110300.415208.763208.02830HepG2SRSF1
C4BPBENSG00000123843.81304.20550723.287900.850403.649802.48470HepG2SRSF3
C4BPBENSG00000123843.82094.655501203.376700.7995016.0634014.62620HepG2SRSF7
C4BPBENSG00000123843.82241.699801912.722300.228902.854002.29550HepG2SRSF9
C4BPBENSG00000123843.84253.159102119.211201.0049050.5928049.07260HepG2SSB
C4BPBENSG00000123843.81651.486402153.11130-0.382702.717801.44540HepG2SSRP1
C4BPBENSG00000123843.81140.32850903.923300.335102.592201.68170HepG2SUPT6H
C4BPBENSG00000123843.81869.494401202.843500.636106.719605.73860HepG2SUPV3L1
C4BPBENSG00000123843.82833.242202113.169100.422906.826306.01420HepG2TAF15
C4BPBENSG00000123843.81148.58650662.024500.7948010.123708.86420HepG2TARDBP
C4BPBENSG00000123843.82245.057801225.536900.8732020.8268019.69080HepG2TIAL1
C4BPBENSG00000123843.81000.390701236.66880-0.305903.379102.76990HepG2TRIM56
C4BPBENSG00000123843.83023.310902091.530100.531505.366404.18410HepG2UBE2L3
C4BPBENSG00000123843.81023.72510710.596000.526604.693903.70010HepG2UCHL5
C4BPBENSG00000123843.81564.584601298.614100.268702.876901.81190HepG2UTP18
C4BPBENSG00000123843.8596.956401219.79170-1.0309026.6576025.09380HepG2UTP3
C4BPBENSG00000123843.8865.855101452.74850-0.746603.581502.37660HepG2XRCC6
C4BPBENSG00000123843.81597.233801184.065700.431703.792102.95210HepG2XRN2
C4BPBENSG00000123843.81389.961201101.255200.335804.648003.81450HepG2ZC3H8
C4BPBENSG00000123843.815.370401.253103.616502.568701.99850K562AQR
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C4BPB is not available on ENCORE database.





5 RBPs can affect the splicing of C4BPB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC4BPBENSG00000123843.8chr1+207269866207269960207264988207265165207271494207271609-0.104000.000050.00143excludedHepG2U2AF1
SEC4BPBENSG00000123843.8chr1+207262443207262503207262238207262291207262826207262934-0.202000.000000.00005excludedHepG2SRSF1
SEC4BPBENSG00000123843.8chr1+207262661207262706207262238207262291207262826207262934-0.252000.000270.02447excludedHepG2TIAL1
SEC4BPBENSG00000123843.8chr1+2072626612072627062072622382072622912072628262072630210.203000.001570.05531includedHepG2HNRNPC
A5SSC4BPBENSG00000123843.8chr1+2072626272072627402072626272072627062072628262072629340.199000.000000.00028longerHepG2DDX3X
MXEC4BPBENSG00000123843.8chr1+2072628262072629342072636522072638262072622382072622912072649882072652170.085000.000000.000191includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C4BPB is not avaliable on ENCORE database.