C17orf62

General Information

Gene Name       : C17orf62
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C17orf62)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C17orf62 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C17orf62 RNA is bound by 19 proteins.  







eCLIP assay for C17orf62 is not avaliable on ENCORE database.





19 proteins are bound to C17orf62 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr178040232280402398-3'-UTR,CDS,intron-Distal,intron-Proximal3.044224.85880HepG2PPIG
chr178040225880402315-3'-UTR,intron-Distal,intron-Proximal4.8836619.71370K562AQR
chr178040198280402046-3'-UTR,CDS,intron-Distal,intron-Proximal3.663765.00154HepG2AQR
chr178040373280403781-3'-UTR,CDS,intron-Distal,intron-Proximal4.382006.08299HepG2PPIG
chr178040149180401542-3'-UTR,CDS,intron-Distal,intron-Proximal3.222843.20150HepG2AKAP1
chr178040148780401545-3'-UTR,CDS,intron-Distal,intron-Proximal4.983457.21030HepG2UPF1
chr178040244980402493-3'-UTR,CDS,intron-Distal,intron-Proximal3.314013.09957HepG2AQR
chr178040231580402323-3'-UTR,CDS,intron-Distal,intron-Proximal4.5964010.16714K562AQR
chr178040239880402439-3'-UTR,CDS,intron-Distal,intron-Proximal3.381205.90680HepG2PPIG
chr178040368380403769-3'-UTR,CDS,intron-Distal,intron-Proximal5.181374.09264K562AQR
chr178040227980402325-3'-UTR,CDS,intron-Distal,intron-Proximal4.183716.20582HepG2PRPF8
chr178040370080403788-3'-UTR,CDS,intron-Distal,intron-Proximal4.626765.58015HepG2AQR
chr178040061380400762-3'-UTR,intron-Distal,intron-Proximal3.783953.79154K562FUS
chr178040369180403757-3'-UTR,CDS,intron-Distal,intron-Proximal4.061749.91476HepG2PRPF8
chr178040198380402032-3'-UTR,CDS,intron-Distal,intron-Proximal3.538678.38394K562AQR
chr178040067380400767-3'-UTR,intron-Distal,intron-Proximal4.436683.60282K562LSM11
chr178040146180401538-3'-UTR,CDS,intron-Distal,intron-Proximal4.734314.48994K562RBM15
chr178040545480405496-5'-UTR,CDS,intron-Distal,intron-Proximal3.478934.13746HepG2PPIG
chr178040841780408497-5'-UTR,intron-Distal5.1521516.80485K562NONO
chr178040852180408611-5'-UTR,intron-Distal,intron-Proximal4.4190742.33806HepG2PRPF8
chr178040857580408613-5'-UTR,intron-Distal,intron-Proximal4.028018.30191HepG2DDX3X
chr178040855980408609-5'-UTR,intron-Distal,intron-Proximal3.206366.40067K562PRPF8
chr178040759980407676-5'-UTR,intron-Distal,intron-Proximal3.111654.87483K562CSTF2T
chr178040736180407451-5'-UTR,intron-Distal,intron-Proximal3.319313.74491K562CSTF2T
chr178040706280407167-5'-UTR,CDS,intron-Distal4.0779921.55382HepG2DDX3X
chr178040849780408571-5'-UTR,intron-Distal,intron-Proximal4.1559811.12962K562NONO
chr178040745180407546-5'-UTR,intron-Distal,intron-Proximal3.532573.01619K562FUS
chr178040839280408513-5'-UTR,intron-Distal3.956983.20724K562SMNDC1
chr178040828080408365-5'-UTR,intron-Distal6.5892637.09955HepG2XPO5
chr178040455680404573-5'-UTR,CDS,intron-Distal,intron-Proximal3.877433.88836HepG2DDX3X
chr178040840480408526-5'-UTR,intron-Distal3.6839914.62505HepG2XPO5
chr178040836780408417-5'-UTR,intron-Distal4.593748.89959K562NONO
chr178040449880404554-5'-UTR,CDS,intron-Distal,intron-Proximal5.149003.85934HepG2DDX3X
chr178040837180408415-5'-UTR,intron-Distal3.640214.21971K562TIA1
chr178040447380404575-5'-UTR,CDS,intron-Distal,intron-Proximal4.839674.11950K562DDX3X
chr178040716780407241-5'-UTR,intron-Distal,intron-Proximal4.370985.73648HepG2SF3B4
chr178040751880407577-5'-UTR,intron-Distal,intron-Proximal5.0075917.31065HepG2XPO5
chr178040838780408517-5'-UTR,intron-Distal3.2440511.71126HepG2EFTUD2
chr178040821380408285-intron-Distal,intron-Proximal4.7260710.80246K562NONO
chr178040766580407693-intron-Distal,intron-Proximal3.335213.80158K562NONO
chr178040675780406891-intron-Distal5.2816617.78195HepG2QKI
chr178040775480407804-intron-Distal,intron-Proximal4.645965.19780K562NONO
chr178040435780404424-intron-Distal,intron-Proximal3.050723.40058K562PRPF8
chr178040485680404891-intron-Distal3.362444.25264K562NONO
chr178040820180408285-intron-Distal,intron-Proximal4.210093.12328HepG2DDX52
chr178040458980404681-intron-Distal,intron-Proximal4.168616.75450K562NONO
chr178040468180404745-intron-Distal5.259118.79830K562NONO
chr178040828580408325-intron-Distal3.856895.85821K562NONO
chr178040823680408275-intron-Distal4.849069.37564HepG2XPO5
chr178040821680408283-intron-Distal,intron-Proximal4.100138.19973HepG2EFTUD2
chr178040444980404499-intron-Distal,intron-Proximal4.895795.26064K562AQR
chr178040820380408326-intron-Distal,intron-Proximal4.128634.90204K562TARDBP
chr178040434180404444-intron-Distal,intron-Proximal4.296909.60483K562NONO
chr178040821180408275-intron-Distal,intron-Proximal3.165253.73797K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C17orf62 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C17orf62 is not available on ENCORE database.

  • 87 RBPs can affect the levels of C17orf62.  








The Knockdown/knockout RNA-Seq assay for C17orf62 is not available on ENCORE database.





87 RBPs can affect the gene expression of C17orf62 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C17orf62ENSG00000178927.121400.82000978.762100.517109.569308.57760HepG2ACO1
C17orf62ENSG00000178927.121113.48240726.893900.615203.828403.21740HepG2AKAP1
C17orf62ENSG00000178927.121227.87040788.496900.638905.542504.08990HepG2AKAP8
C17orf62ENSG00000178927.12907.55240557.416100.703102.209101.37510HepG2BCCIP
C17orf62ENSG00000178927.121050.70120488.623101.1045017.7102016.38940HepG2BOP1
C17orf62ENSG00000178927.12928.32760571.372800.700105.919204.81870HepG2CIRBP
C17orf62ENSG00000178927.121207.23440978.544100.302903.734102.98330HepG2CKAP4
C17orf62ENSG00000178927.12854.17300578.200100.562902.921702.13500HepG2CNOT7
C17orf62ENSG00000178927.12908.67680698.770200.378802.519501.46390HepG2CPSF7
C17orf62ENSG00000178927.12783.48730535.550600.548804.863803.99100HepG2DDX21
C17orf62ENSG00000178927.121062.73720696.172200.610204.273103.50990HepG2DDX3X
C17orf62ENSG00000178927.12630.89790828.94320-0.393902.807901.50480HepG2DDX47
C17orf62ENSG00000178927.121124.40540598.349300.910008.492607.46680HepG2DDX6
C17orf62ENSG00000178927.121127.88110936.408700.268302.468901.82310HepG2DKC1
C17orf62ENSG00000178927.12629.47280511.875900.298202.476601.85370HepG2DNAJC2
C17orf62ENSG00000178927.12947.69910574.887100.721105.781604.94260HepG2EIF2S1
C17orf62ENSG00000178927.121079.33520635.162800.764804.893404.04670HepG2EIF4A3
C17orf62ENSG00000178927.121064.30030618.716100.782505.469504.52580HepG2EIF4B
C17orf62ENSG00000178927.12761.53250924.59540-0.279902.218201.45430HepG2EIF4G1
C17orf62ENSG00000178927.121262.86750956.420800.400903.719102.75110HepG2EWSR1
C17orf62ENSG00000178927.121275.72670641.321800.992105.737804.76470HepG2FXR1
C17orf62ENSG00000178927.121067.80090594.673200.844407.495106.42370HepG2G3BP1
C17orf62ENSG00000178927.12713.90290536.997100.410702.260101.34360HepG2GNB2L1
C17orf62ENSG00000178927.12694.80620508.423100.450502.573001.95280HepG2GPKOW
C17orf62ENSG00000178927.12716.01850521.325200.457703.449902.73820HepG2HNRNPA1
C17orf62ENSG00000178927.12686.21930477.579500.522803.125601.63810HepG2HNRNPAB
C17orf62ENSG00000178927.121345.10800602.736701.1580019.9194018.19860HepG2HNRNPK
C17orf62ENSG00000178927.12691.68100576.061800.263802.052001.52050HepG2HNRNPU
C17orf62ENSG00000178927.121083.87650604.384500.842607.118806.08520HepG2IGF2BP2
C17orf62ENSG00000178927.121013.18590567.542400.836003.307602.23100HepG2IGF2BP3
C17orf62ENSG00000178927.12903.49810608.071800.571203.590102.42760HepG2KHSRP
C17orf62ENSG00000178927.121085.16930641.547800.758206.473805.48160HepG2MAGOH
C17orf62ENSG00000178927.121047.00130645.062200.698705.465704.60380HepG2MATR3
C17orf62ENSG00000178927.12912.23930693.409100.395602.096601.38800HepG2MSI2
C17orf62ENSG00000178927.121062.06200660.195000.685804.513303.71360HepG2NCBP2
C17orf62ENSG00000178927.121272.92310929.264200.453905.588304.51100HepG2NOL12
C17orf62ENSG00000178927.12361.50320528.52400-0.548002.331101.52950HepG2PABPC1
C17orf62ENSG00000178927.12744.74790570.178400.385203.630502.67430HepG2PARN
C17orf62ENSG00000178927.12830.23540625.507200.408404.327603.59820HepG2PCBP1
C17orf62ENSG00000178927.12431.77510630.98500-0.547306.026204.93140HepG2PRPF4
C17orf62ENSG00000178927.12661.05640422.409100.646002.257001.52450HepG2PRPF8
C17orf62ENSG00000178927.121083.85640636.495200.7679014.1550013.10550HepG2PTBP1
C17orf62ENSG00000178927.121681.863701195.165500.492806.795506.06880HepG2RBM22
C17orf62ENSG00000178927.12885.31250625.599800.500804.693103.83570HepG2RBM25
C17orf62ENSG00000178927.121316.71810708.342900.8943020.3103019.10380HepG2NELFE
C17orf62ENSG00000178927.121063.83880659.752700.689209.339008.30710HepG2RECQL
C17orf62ENSG00000178927.12608.28510459.965400.403101.934501.41270HepG2RPS19
C17orf62ENSG00000178927.12831.33360585.133600.506603.652702.73730HepG2RPS2
C17orf62ENSG00000178927.12881.69600580.750800.602303.958303.00150HepG2RPS3A
C17orf62ENSG00000178927.12645.50670512.997100.331402.792802.14630HepG2SAFB2
C17orf62ENSG00000178927.121234.19340824.749600.581404.077203.25130HepG2SF3A3
C17orf62ENSG00000178927.121423.80560662.640901.1034031.5550029.94940HepG2SF3B4
C17orf62ENSG00000178927.12765.60690598.222200.355803.709102.98270HepG2SMN1
C17orf62ENSG00000178927.12556.52190691.66700-0.313602.332301.88860HepG2SRSF1
C17orf62ENSG00000178927.12790.48570562.719500.490206.169705.40310HepG2SRSF9
C17orf62ENSG00000178927.12736.82490505.240800.544303.419002.18310HepG2STIP1
C17orf62ENSG00000178927.121327.24550996.105300.414006.660305.76840HepG2SUCLG1
C17orf62ENSG00000178927.12772.68880559.679200.465204.292203.69770HepG2TIAL1
C17orf62ENSG00000178927.12783.44800564.760200.472105.589904.84010HepG2TRIM56
C17orf62ENSG00000178927.121067.46030513.230101.056403.120802.07120HepG2U2AF2
C17orf62ENSG00000178927.121168.25260917.383400.348702.133501.40430HepG2UBE2L3
C17orf62ENSG00000178927.121253.63660804.430600.6400014.3756013.37030HepG2ZNF622
C17orf62ENSG00000178927.12687.96140947.85880-0.462305.424404.67200K562AGGF1
C17orf62ENSG00000178927.12642.13740986.28370-0.619106.627405.58400K562AKAP8L
C17orf62ENSG00000178927.121008.761301413.65580-0.486804.307303.60580K562AQR
C17orf62ENSG00000178927.121465.775501938.21350-0.403105.261203.91140K562CELF1
C17orf62ENSG00000178927.12809.849401061.35170-0.390204.224903.11020K562DKC1
C17orf62ENSG00000178927.12847.61130595.592100.509003.843602.75530K562EFTUD2
C17orf62ENSG00000178927.121722.90300979.886900.8141019.3270017.68250K562EIF2S2
C17orf62ENSG00000178927.12114.65580347.92700-1.6015014.1827012.30960K562G3BP2
C17orf62ENSG00000178927.12558.57780425.232600.393402.364401.62900K562GPKOW
C17orf62ENSG00000178927.12847.220501058.78970-0.321602.532201.50410K562HNRNPA1
C17orf62ENSG00000178927.12384.24310749.90220-0.964702.888201.63960K562HNRNPA2B1
C17orf62ENSG00000178927.12491.37860652.78860-0.409802.809002.20750K562HNRNPC
C17orf62ENSG00000178927.12620.114701046.71570-0.755307.946106.36490K562KIF1C
C17orf62ENSG00000178927.12749.869401001.94650-0.418102.717001.65420K562MAK16
C17orf62ENSG00000178927.12395.69850821.89370-1.0546010.050907.97450K562NAA15
C17orf62ENSG00000178927.12885.98990585.309400.598005.648204.28460K562PSIP1
C17orf62ENSG00000178927.121277.007801719.55990-0.429304.042503.06120K562PUF60
C17orf62ENSG00000178927.121495.962301829.32620-0.290202.931701.83140K562PUM1
C17orf62ENSG00000178927.12410.66500978.16820-1.2521019.1102017.71410K562PUS1
C17orf62ENSG00000178927.12167.22610331.99990-0.989404.755902.82280K562RAVER1
C17orf62ENSG00000178927.12444.23990953.03990-1.101206.387205.51190K562RBM15
C17orf62ENSG00000178927.12839.91920530.192300.663604.559103.44880K562RBM22
C17orf62ENSG00000178927.12191.34870330.18080-0.787105.536203.57160K562RBM25
C17orf62ENSG00000178927.12725.95520534.096500.442703.493702.38360K562RCC2
C17orf62ENSG00000178927.12510.30210297.612700.777804.425403.12100K562RPS3
C17orf62ENSG00000178927.12628.49230813.26790-0.371803.047502.18240K562SYNCRIP
C17orf62ENSG00000178927.12206.52170341.54500-0.725802.958601.42630K562TAF15
C17orf62ENSG00000178927.12985.60620548.869100.844407.623806.38180K562TARDBP
C17orf62ENSG00000178927.12807.83140529.486200.609403.168302.28430K562TIA1
C17orf62ENSG00000178927.12486.68410991.71470-1.026906.600704.39240K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C17orf62 is not available on ENCORE database.





14 RBPs can affect the splicing of C17orf62 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC17orf62ENSG00000178927.12chr17-804044988040457280403739804038368040857580408705-0.259000.000610.05359excludedK562XRCC6
SEC17orf62ENSG00000178927.12chr17-8040730680407356804070458040716880408575804086510.150000.005060.09646includedHepG2HNRNPK
SEC17orf62ENSG00000178927.12chr17-804044988040457280403739804038368040704580407168-0.223000.000010.00073excludedHepG2HNRNPK
SEC17orf62ENSG00000178927.12chr17-8040545580405497804044988040457280407045804071680.159000.000090.00930includedHepG2AKAP1
SEC17orf62ENSG00000178927.12chr17-8040545580405497804044988040457280407045804071680.342000.000080.00500includedK562FXR1
SEC17orf62ENSG00000178927.12chr17-8040730680407832804070498040716880408575804086130.562000.000040.00113includedK562PUS1
SEC17orf62ENSG00000178927.12chr17-804037398040383680402322804024678040857580408625-0.168000.008180.09020excludedK562PUS1
SEC17orf62ENSG00000178927.12chr17-804073068040783280407049804071688040857580408613-0.237000.000310.08593excludedK562UCHL5
SEC17orf62ENSG00000178927.12chr17-8040545580405497804044988040457280407045804071680.181000.000110.01347includedHepG2IGF2BP3
SEC17orf62ENSG00000178927.12chr17-8040704580407168804037398040383680408575804085990.272000.000180.08938includedK562PUM2
SEC17orf62ENSG00000178927.12chr17-804044988040457280403739804038368040704580407168-0.412000.000020.00183excludedK562HNRNPK
SEC17orf62ENSG00000178927.12chr17-804073068040735680407045804071688040857580408651-0.508000.005930.07940excludedK562HNRNPC
MXEC17orf62ENSG00000178927.12chr17-80404498804045728040545580405497804037398040383680407045804071680.161000.002380.058121includedHepG2MATR3
MXEC17orf62ENSG00000178927.12chr17-8040449880404572804070458040716880403739804038368040857580408705-0.150000.003430.090772includedHepG2TAF15
MXEC17orf62ENSG00000178927.12chr17-80404498804045728040545580405497804037398040383680407045804071680.253000.000530.028351includedK562FXR1
MXEC17orf62ENSG00000178927.12chr17-80404498804045728040545580405497804037398040383680407045804071680.173000.002540.069021includedHepG2PCBP1
MXEC17orf62ENSG00000178927.12chr17-80404498804045728040545580405497804037398040383680407045804071680.170000.002600.072831includedHepG2NCBP2
MXEC17orf62ENSG00000178927.12chr17-80404498804045728040704580407168804037398040383680408575804087050.384000.000020.004331includedK562HNRNPK
MXEC17orf62ENSG00000178927.12chr17-80404498804045728040704580407168804037398040383680408575804087050.231000.000410.012631includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C17orf62 is not avaliable on ENCORE database.