BCKDHA

General Information

Gene Name       : BCKDHA
Gene ID             : ENSG00000248098.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BCKDHA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BCKDHAENSG00000248098.118.6628.2218.44ENCSR000AEF
HepG2BCKDHAENSG00000248098.116.923.405.16ENCSR985KAT
K562BCKDHAENSG00000248098.1120.8316.1618.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BCKDHA is not avaliable on ENCORE database.



Proteins bound to RNA
  • BCKDHA RNA is bound by 13 proteins.  







eCLIP assay for BCKDHA is not avaliable on ENCORE database.





13 proteins are bound to BCKDHA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194193062541930680+3'-UTR3.745725.21096K562DDX55
chr194193061941930668+3'-UTR,CDS4.649087.71026K562PABPC4
chr194193074741930830+3'-UTR4.144973.64119HepG2UPF1
chr194193067641930743+3'-UTR3.228513.55700HepG2LARP4
chr194193075841930853+3'-UTR3.622703.08588HepG2IGF2BP3
chr194193081041930872+3'-UTR5.193248.52455K562PABPC4
chr194191662841916658+CDS3.436977.18470K562YBX3
chr194191670941916723+CDS,intron-Proximal3.150633.06971K562YBX3
chr194191686641916914+CDS,intron-Distal3.934398.08045K562YBX3
chr194191682841916851+CDS,intron-Distal3.824593.66655K562YBX3
chr194190375041903812+CDS,intron-Distal,intron-Proximal5.311515.70239K562DROSHA
chr194188416641884246+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.847016.53595K562U2AF2
chr194192820441928249+CDS3.824597.40140K562YBX3
chr194191665841916676+CDS3.164876.98725K562YBX3
chr194192012241920213+intron-Distal,intron-Proximal3.884433.02181K562PRPF8
chr194190569341905746+intron-Distal4.428283.91475K562PTBP1
chr194188954241889650+3'-UTR,CDS,intron-Distal,intron-Proximal3.986708.25772K562LSM11
chr194188882641888897+3'-UTR,CDS,intron-Distal,intron-Proximal4.425213.93614HepG2AQR
chr194188953241889613+3'-UTR,intron-Distal,intron-Proximal4.769825.57311HepG2RBFOX2
chr194188973941889805+3'-UTR,CDS,intron-Distal,intron-Proximal4.344388.29266K562AQR
chr194192908441929163+intron-Proximal5.292566.75320K562AQR
chr194192907441929084+intron-Proximal4.734824.86944K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BCKDHA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BCKDHA is not available on ENCORE database.

  • 96 RBPs can affect the levels of BCKDHA.  








The Knockdown/knockout RNA-Seq assay for BCKDHA is not available on ENCORE database.





96 RBPs can affect the gene expression of BCKDHA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BCKDHAENSG00000248098.6242.88340485.31580-0.998704.000403.09640HepG2CALR
BCKDHAENSG00000248098.6356.71610561.64200-0.654906.175105.25380HepG2CKAP4
BCKDHAENSG00000248098.6404.43980556.69440-0.461002.723902.08520HepG2CELF1
BCKDHAENSG00000248098.6324.65250519.61180-0.678505.459004.34000HepG2DDX19B
BCKDHAENSG00000248098.6959.25590526.635600.865002.404701.81700HepG2DDX3X
BCKDHAENSG00000248098.61128.04510452.862701.316607.517406.54460HepG2DDX6
BCKDHAENSG00000248098.6391.24630537.54680-0.458302.829902.14550HepG2DKC1
BCKDHAENSG00000248098.6486.59240257.822700.916202.208201.57280HepG2DNAJC21
BCKDHAENSG00000248098.6701.79790255.712301.456409.922408.77890HepG2DNAJC2
BCKDHAENSG00000248098.6368.10280560.17320-0.605802.603501.47460HepG2EIF2S2
BCKDHAENSG00000248098.6468.52500590.52780-0.333902.077401.33470HepG2EIF4G1
BCKDHAENSG00000248098.6285.23340548.95550-0.944505.233304.08510HepG2EWSR1
BCKDHAENSG00000248098.6601.88620368.513200.707707.456905.52230HepG2FAM120A
BCKDHAENSG00000248098.6518.07870745.98550-0.526001.978901.32150HepG2FIP1L1
BCKDHAENSG00000248098.6948.71690449.877501.076303.534502.78680HepG2G3BP1
BCKDHAENSG00000248098.6953.56400545.154400.8066017.6860016.11720HepG2HNRNPL
BCKDHAENSG00000248098.6269.75440514.45460-0.931404.992803.75360HepG2HNRNPM
BCKDHAENSG00000248098.6470.98110724.53170-0.621403.319301.96870HepG2HSPD1
BCKDHAENSG00000248098.6523.63160374.855700.482103.382802.58920HepG2IGF2BP1
BCKDHAENSG00000248098.6544.92400363.440300.584202.909501.91230HepG2MTPAP
BCKDHAENSG00000248098.6913.98100593.469600.622905.399404.34110HepG2NOL12
BCKDHAENSG00000248098.664.47350825.25430-3.67810101.8514099.12030HepG2PCBP1
BCKDHAENSG00000248098.6205.77750378.12700-0.877805.289003.88610HepG2PCBP2
BCKDHAENSG00000248098.6555.61150256.565501.114602.200301.53510HepG2PPIL4
BCKDHAENSG00000248098.6142.12670229.44720-0.691002.042201.34380HepG2PRPF8
BCKDHAENSG00000248098.6480.61550839.75720-0.8051012.3134011.32240HepG2PTBP1
BCKDHAENSG00000248098.6280.07700566.54360-1.016403.306402.66320HepG2PUF60
BCKDHAENSG00000248098.6434.46720601.44010-0.469204.674703.94620HepG2PUM1
BCKDHAENSG00000248098.6410.67970558.07470-0.442402.877102.35150HepG2RBM22
BCKDHAENSG00000248098.6187.13050825.37550-2.1410050.9658048.40540HepG2RBM25
BCKDHAENSG00000248098.6524.27360934.54410-0.8339014.1657013.12050HepG2NELFE
BCKDHAENSG00000248098.6353.65580870.44620-1.2994029.4712027.84450HepG2RECQL
BCKDHAENSG00000248098.6213.89150401.15600-0.907307.972906.99250HepG2RPS19
BCKDHAENSG00000248098.6119.25420226.94980-0.928302.324701.59710HepG2RRP9
BCKDHAENSG00000248098.6652.94290256.146801.349903.996603.24570HepG2SAFB2
BCKDHAENSG00000248098.6500.28060249.926601.001102.776501.42230HepG2SF1
BCKDHAENSG00000248098.6286.41150594.45310-1.053508.528307.29290HepG2SF3A3
BCKDHAENSG00000248098.6194.00070352.76010-0.862606.159205.14100HepG2SF3B1
BCKDHAENSG00000248098.6289.85760874.24160-1.5927040.7296038.96920HepG2SF3B4
BCKDHAENSG00000248098.6767.51020543.286800.498405.878904.91840HepG2SLBP
BCKDHAENSG00000248098.6774.22670371.958901.0575010.156308.24700HepG2SMNDC1
BCKDHAENSG00000248098.6626.26490355.012400.818806.220903.78850HepG2SND1
BCKDHAENSG00000248098.6484.04430223.383801.115503.706902.13870HepG2SNRNP200
BCKDHAENSG00000248098.6333.40050630.32560-0.9188014.3253013.42190HepG2SRFBP1
BCKDHAENSG00000248098.6259.54260912.54100-1.8139052.4711050.98430HepG2SRSF1
BCKDHAENSG00000248098.6613.02610379.550000.691604.644903.31500HepG2SRSF3
BCKDHAENSG00000248098.6299.74290742.41970-1.3085014.9272013.82790HepG2SRSF9
BCKDHAENSG00000248098.6138.46850547.27310-1.9827030.5375029.25070HepG2SSB
BCKDHAENSG00000248098.6213.52710341.02460-0.675502.795901.58650HepG2SUB1
BCKDHAENSG00000248098.6158.34290296.30500-0.904002.395501.76050HepG2SUPV3L1
BCKDHAENSG00000248098.6185.47300820.28860-2.1449058.5807056.42400HepG2TAF15
BCKDHAENSG00000248098.6603.18350282.033501.096604.453903.77290HepG2TRIM56
BCKDHAENSG00000248098.6306.83980553.53660-0.851208.455406.79360HepG2TUFM
BCKDHAENSG00000248098.6171.51830637.92200-1.8950010.166908.94500HepG2U2AF1
BCKDHAENSG00000248098.6314.58280508.98050-0.694207.248206.35500HepG2UTP3
BCKDHAENSG00000248098.6233.21970401.29800-0.783004.614803.26320HepG2XRCC6
BCKDHAENSG00000248098.6712.60420579.807100.297402.662102.12320HepG2ZNF622
BCKDHAENSG00000248098.62018.579301416.629200.5108010.704409.68240K562AGGF1
BCKDHAENSG00000248098.6878.09140688.000900.351903.362501.67410K562AKAP1
BCKDHAENSG00000248098.62267.788501556.763400.542606.716305.01890K562AKAP8
BCKDHAENSG00000248098.62040.615301474.092000.469103.122302.42720K562AKAP8L
BCKDHAENSG00000248098.6554.02180883.93640-0.674001.998401.48440K562AQR
BCKDHAENSG00000248098.6595.27800456.438100.383002.822601.49330K562BCCIP
BCKDHAENSG00000248098.61090.910001486.63250-0.446502.644901.69130K562CELF1
BCKDHAENSG00000248098.6981.22260738.643300.409604.354302.08080K562DDX24
BCKDHAENSG00000248098.6974.70750697.111100.483504.845303.41100K562DDX3X
BCKDHAENSG00000248098.6588.37460915.25790-0.637409.804608.66750K562DDX47
BCKDHAENSG00000248098.6640.59790410.252800.642803.492002.04020K562EEF2
BCKDHAENSG00000248098.6905.67020635.731600.510505.511003.56720K562EWSR1
BCKDHAENSG00000248098.6725.95890442.517500.714107.340705.89890K562FIP1L1
BCKDHAENSG00000248098.6367.56180757.40430-1.0431018.2963016.85000K562FXR1
BCKDHAENSG00000248098.6645.43450475.352700.441203.285101.69430K562G3BP1
BCKDHAENSG00000248098.636.71980246.68930-2.7481017.9268015.69860K562G3BP2
BCKDHAENSG00000248098.6340.94710604.96410-0.827308.569007.57060K562HNRNPC
BCKDHAENSG00000248098.6292.61320496.45650-0.762703.044601.74620K562HNRNPK
BCKDHAENSG00000248098.6855.00790599.898700.511103.729902.81110K562HSPD1
BCKDHAENSG00000248098.6936.75490497.551700.912706.155204.36280K562IGF2BP2
BCKDHAENSG00000248098.6778.64360505.920200.622004.791703.13580K562IGF2BP3
BCKDHAENSG00000248098.62067.518001564.292100.402305.146603.95190K562KIF1C
BCKDHAENSG00000248098.6890.11250613.648600.536504.446802.50680K562LIN28B
BCKDHAENSG00000248098.6791.53150539.520800.552905.085402.91750K562LSM11
BCKDHAENSG00000248098.62170.981301497.483800.535707.069205.03200K562MAK16
BCKDHAENSG00000248098.61049.993401322.32620-0.332702.818801.31770K562NOL12
BCKDHAENSG00000248098.6633.86110390.910500.697205.122703.21740K562NONO
BCKDHAENSG00000248098.61395.32320716.039700.962405.323603.82380K562PABPN1
BCKDHAENSG00000248098.6353.73810510.94370-0.530502.709601.37370K562PCBP1
BCKDHAENSG00000248098.6249.04750464.84080-0.900306.333604.83670K562PCBP2
BCKDHAENSG00000248098.6884.12820502.407700.815306.312204.98680K562PPIG
BCKDHAENSG00000248098.61784.50840851.007301.068204.779002.69190K562PPP1R8
BCKDHAENSG00000248098.6239.43740385.62660-0.687602.487601.77580K562PRPF8
BCKDHAENSG00000248098.6702.92130542.423800.373802.342601.51600K562PSIP1
BCKDHAENSG00000248098.6472.706001318.80940-1.4802032.4129029.62730K562PUF60
BCKDHAENSG00000248098.6963.256001403.09760-0.542605.811804.21320K562PUM1
BCKDHAENSG00000248098.61175.676601374.41390-0.225302.218701.35680K562PUM2
BCKDHAENSG00000248098.62197.294601461.715500.588002.112601.62530K562PUS1
BCKDHAENSG00000248098.6438.72950275.856100.669305.709503.05150K562QKI
BCKDHAENSG00000248098.62004.245101424.370100.492608.117207.13110K562RBM15
BCKDHAENSG00000248098.6653.85010474.504800.462403.061401.57490K562RBM34
BCKDHAENSG00000248098.6724.29390494.940200.549205.134603.77890K562RCC2
BCKDHAENSG00000248098.6378.97390250.222700.598803.844601.78890K562RECQL
BCKDHAENSG00000248098.61118.05540654.669900.772102.755001.55500K562SF1
BCKDHAENSG00000248098.6308.46440455.75490-0.563203.094802.06460K562SF3B1
BCKDHAENSG00000248098.61107.88120740.704900.580703.489901.50980K562SMN1
BCKDHAENSG00000248098.6833.40360470.193100.825702.982301.88480K562SRSF5
BCKDHAENSG00000248098.6473.88750679.00340-0.518904.725503.64700K562SYNCRIP
BCKDHAENSG00000248098.6131.57140242.13880-0.880003.584801.83890K562TAF15
BCKDHAENSG00000248098.6822.72240503.658800.707904.265703.38130K562TARDBP
BCKDHAENSG00000248098.6171.05510256.96220-0.587102.943601.30400K562TBRG4
BCKDHAENSG00000248098.6941.31730485.860500.954007.091005.68190K562TIA1
BCKDHAENSG00000248098.6873.65280476.996400.873003.439402.19570K562TRA2A
BCKDHAENSG00000248098.6878.71990554.309200.664606.776805.14590K562TRIM56
BCKDHAENSG00000248098.61348.087301049.003800.361804.699703.03860K562TROVE2
BCKDHAENSG00000248098.6107.36900238.90860-1.153907.248705.31970K562U2AF1
BCKDHAENSG00000248098.690.43600246.81040-1.4484011.9526010.26310K562U2AF2
BCKDHAENSG00000248098.6229.82180784.12140-1.7706016.7371012.85110K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BCKDHA is not available on ENCORE database.





8 RBPs can affect the splicing of BCKDHA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.073000.000070.00827includedHepG2TBRG4
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.134000.000010.00012includedHepG2U2AF2
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.074000.005490.05749includedHepG2PRPF8
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.170000.000100.00246includedHepG2PCBP1
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.063000.000020.00080includedK562RBM22
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.112000.002290.02352includedHepG2U2AF1
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.157000.000000.00001includedHepG2TIAL1
RIBCKDHAENSG00000248098.6chr19+4191654141916914419165414191672141916827419169140.067000.000080.00826includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BCKDHA is not avaliable on ENCORE database.