ATPAF1

General Information

Gene Name       : ATPAF1
Gene ID             : ENSG00000123472.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATPAF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATPAF1ENSG00000123472.1238.5746.0242.30ENCSR000AEF
HepG2ATPAF1ENSG00000123472.1244.0955.6749.88ENCSR985KAT
K562ATPAF1ENSG00000123472.1227.3630.2328.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATPAF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATPAF1 RNA is bound by 9 proteins.  







eCLIP assay for ATPAF1 is not avaliable on ENCORE database.





9 proteins are bound to ATPAF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14712436447124410-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal6.0540220.86620K562TROVE2
chr14710049847100600-3'-UTR,intron-Distal5.136678.00788K562UPF1
chr14710097647101097-3'-UTR,intron-Distal,intron-Proximal4.578766.09204K562YBX3
chr14709847247098547-3'-UTR,intron-Distal4.445537.43423K562CPSF6
chr14711073847110855-3'-UTR,CDS,intron-Distal,intron-Proximal3.884433.02181K562PRPF8
chr14713093047130938-5'-UTR,CDS,intron-Distal6.5776717.27574K562TROVE2
chr14713379347134026-5'-UTR,CDS,intron-Distal,intron-Proximal3.803565.14253HepG2GRWD1
chr14713092747130930-5'-UTR,CDS,intron-Distal,intron-Proximal6.5776717.27574K562TROVE2
chr14713390947134015-5'-UTR,CDS,intron-Distal,intron-Proximal5.1173813.13184HepG2DDX3X
chr14713379347133909-CDS,intron-Distal,intron-Proximal4.185766.67587HepG2DDX3X
chr14713391447133982-CDS,intron-Distal,intron-Proximal3.556153.59569K562FTO
chr14713079647130921-intron-Distal,intron-Proximal4.176913.85435K562PRPF8
chr14711313447113200-intron-Distal3.918233.69425K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATPAF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATPAF1 is not available on ENCORE database.

  • 71 RBPs can affect the levels of ATPAF1.  








The Knockdown/knockout RNA-Seq assay for ATPAF1 is not available on ENCORE database.





71 RBPs can affect the gene expression of ATPAF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATPAF1ENSG00000123472.8866.052601021.08320-0.237602.169301.61720HepG2ACO1
ATPAF1ENSG00000123472.81131.929501887.67510-0.737807.381406.55760HepG2AKAP1
ATPAF1ENSG00000123472.8794.347801257.63280-0.662908.802906.94820HepG2CPSF7
ATPAF1ENSG00000123472.8317.62930946.15880-1.5747041.0988037.64250HepG2YBX3
ATPAF1ENSG00000123472.81227.222601456.80480-0.247402.407301.80040HepG2CELF1
ATPAF1ENSG00000123472.81285.313901808.37150-0.492604.054503.30860HepG2DDX3X
ATPAF1ENSG00000123472.81265.84670993.809000.349002.663701.38820HepG2DDX47
ATPAF1ENSG00000123472.8489.39130984.74510-1.0088011.338609.90220HepG2DDX55
ATPAF1ENSG00000123472.8959.229101553.14220-0.695206.601405.67870HepG2DDX6
ATPAF1ENSG00000123472.8591.68290929.11980-0.651009.340708.10890HepG2DNAJC21
ATPAF1ENSG00000123472.81157.507701493.35750-0.367502.248001.70810HepG2EIF2S1
ATPAF1ENSG00000123472.8580.76630815.20380-0.489203.276302.29890HepG2EIF3D
ATPAF1ENSG00000123472.81000.657901606.70470-0.683204.892903.99530HepG2EIF4B
ATPAF1ENSG00000123472.8885.888301545.38010-0.8028019.4411017.65000HepG2EIF4G1
ATPAF1ENSG00000123472.8564.53920997.91460-0.8218011.8276010.14060HepG2EWSR1
ATPAF1ENSG00000123472.81000.669201542.17000-0.624005.417104.37100HepG2FIP1L1
ATPAF1ENSG00000123472.81205.624901664.84220-0.465603.925303.11040HepG2FXR1
ATPAF1ENSG00000123472.8986.612201639.50930-0.732707.917506.39450HepG2G3BP2
ATPAF1ENSG00000123472.8891.037201563.54070-0.811309.948208.69320HepG2HNRNPK
ATPAF1ENSG00000123472.8966.419601426.96770-0.5622012.2551010.93260HepG2HNRNPL
ATPAF1ENSG00000123472.8857.153401063.95840-0.311802.401101.51360HepG2HNRNPM
ATPAF1ENSG00000123472.8982.801301195.90040-0.283102.270501.61190HepG2IGF2BP1
ATPAF1ENSG00000123472.8983.120901570.13410-0.675406.593705.59290HepG2IGF2BP2
ATPAF1ENSG00000123472.8800.087401058.70240-0.404105.764904.74120HepG2ILF2
ATPAF1ENSG00000123472.8979.675701665.42150-0.765507.928706.82990HepG2MAGOH
ATPAF1ENSG00000123472.81254.436101674.81040-0.417002.850002.21020HepG2MATR3
ATPAF1ENSG00000123472.8900.807101248.01610-0.470304.802203.75720HepG2MSI2
ATPAF1ENSG00000123472.8911.317701714.31650-0.9116010.107208.94070HepG2NCBP2
ATPAF1ENSG00000123472.81084.700001553.32070-0.518107.563806.31940HepG2NOL12
ATPAF1ENSG00000123472.8433.52810715.41040-0.722603.946302.87330HepG2PABPC1
ATPAF1ENSG00000123472.8848.481801025.94380-0.274002.510901.70000HepG2PARN
ATPAF1ENSG00000123472.8977.862001617.70440-0.7262017.4782016.16350HepG2PCBP1
ATPAF1ENSG00000123472.81589.792401213.491700.389605.369904.32680HepG2PRPF4
ATPAF1ENSG00000123472.8521.49240759.58150-0.542603.953603.00870HepG2PRPF8
ATPAF1ENSG00000123472.81031.467101646.02400-0.6743014.9858013.90940HepG2PTBP1
ATPAF1ENSG00000123472.81076.553701482.76300-0.461904.952604.18270HepG2PUF60
ATPAF1ENSG00000123472.8384.738401573.99790-2.03250114.32570111.79840HepG2PUM1
ATPAF1ENSG00000123472.81324.848701572.86090-0.247602.076001.49000HepG2PUM2
ATPAF1ENSG00000123472.81034.609401547.58040-0.580908.444507.05400HepG2RBM15
ATPAF1ENSG00000123472.8962.180301423.77450-0.565308.679907.88070HepG2RBM22
ATPAF1ENSG00000123472.81207.876101831.90880-0.6009012.5877011.58900HepG2NELFE
ATPAF1ENSG00000123472.81060.278701706.09770-0.6863015.8534014.57730HepG2RECQL
ATPAF1ENSG00000123472.81039.592401308.25910-0.331602.540201.88150HepG2RPLP0
ATPAF1ENSG00000123472.8592.79540793.19900-0.420103.283902.62170HepG2RPS19
ATPAF1ENSG00000123472.8743.753901051.75120-0.499904.248603.26400HepG2RPS2
ATPAF1ENSG00000123472.8771.706101073.61240-0.476303.923902.62930HepG2RPS5
ATPAF1ENSG00000123472.8503.80500751.37640-0.576704.050303.12040HepG2RRP9
ATPAF1ENSG00000123472.8808.850901452.82940-0.8449012.5236011.12720HepG2SF3B1
ATPAF1ENSG00000123472.81170.026901713.81440-0.5507010.726409.67920HepG2SF3B4
ATPAF1ENSG00000123472.8848.662701076.42790-0.343004.356803.58200HepG2SMN1
ATPAF1ENSG00000123472.8744.141801671.04330-1.167103.729502.15270HepG2SNRNP200
ATPAF1ENSG00000123472.81320.380901608.13250-0.284403.407202.86860HepG2SRFBP1
ATPAF1ENSG00000123472.81129.197401563.30160-0.469303.112002.04120HepG2SRSF3
ATPAF1ENSG00000123472.81245.017501463.98790-0.233702.321001.74140HepG2SRSF5
ATPAF1ENSG00000123472.81139.710101455.26360-0.352605.075704.36910HepG2SRSF9
ATPAF1ENSG00000123472.82116.676801396.294900.6001015.1352014.12960HepG2SSB
ATPAF1ENSG00000123472.8971.526901664.97860-0.7772022.3459020.85130HepG2SUCLG1
ATPAF1ENSG00000123472.81240.767301607.75290-0.373804.800104.09450HepG2TAF15
ATPAF1ENSG00000123472.81206.448901477.41510-0.292302.640201.82150HepG2TIA1
ATPAF1ENSG00000123472.8853.539501016.09820-0.251502.377001.84630HepG2TRIM56
ATPAF1ENSG00000123472.81093.809401533.25920-0.487203.791402.80450HepG2UBE2L3
ATPAF1ENSG00000123472.8448.90120579.06670-0.367302.028401.37800HepG2UCHL5
ATPAF1ENSG00000123472.8940.530901199.43240-0.350804.023303.32050HepG2UTP3
ATPAF1ENSG00000123472.81597.590001197.598100.415707.219306.21850HepG2ZC3H8
ATPAF1ENSG00000123472.8969.862101158.92430-0.256902.410101.87430K562AGGF1
ATPAF1ENSG00000123472.81450.142201130.250800.359502.609401.76430K562BOP1
ATPAF1ENSG00000123472.81013.086001303.57500-0.363704.157802.77990K562CPEB4
ATPAF1ENSG00000123472.8341.37020530.66140-0.636503.868601.65790K562YBX3
ATPAF1ENSG00000123472.82423.416501952.056700.311903.465102.37170K562CELF1
ATPAF1ENSG00000123472.8804.10990656.730100.292002.157401.61100K562FXR1
ATPAF1ENSG00000123472.8884.959201147.44790-0.374703.041302.20970K562GPKOW
ATPAF1ENSG00000123472.8570.97650821.54240-0.524903.464302.26890K562IGF2BP2
ATPAF1ENSG00000123472.8694.31360863.37750-0.314402.156301.40960K562MAGOH
ATPAF1ENSG00000123472.81327.028201842.45850-0.473406.331304.66290K562PUM1
ATPAF1ENSG00000123472.8845.452901165.26000-0.462905.514404.70270K562RBM15
ATPAF1ENSG00000123472.8648.242101067.21530-0.719202.898501.65550K562SF1
ATPAF1ENSG00000123472.81179.333001511.44310-0.358003.555301.85070K562SUCLG1
ATPAF1ENSG00000123472.8867.44130644.979200.427402.908101.94700K562TIAL1
ATPAF1ENSG00000123472.8646.82360954.42860-0.561303.657402.65230K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATPAF1 is not available on ENCORE database.





3 RBPs can affect the splicing of ATPAF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATPAF1ENSG00000123472.8chr1-471194884711953947118252471183004712379847123861-0.310000.000000.00012excludedK562SF3B4
SEATPAF1ENSG00000123472.8chr1-4712950447129595471243584712440947130927471310360.069000.005670.05150includedK562AQR
SEATPAF1ENSG00000123472.8chr1-4711948847119539471182524711830047123798471238610.115000.000010.00030includedHepG2SRSF1
SEATPAF1ENSG00000123472.8chr1-4711083247110928470984084710164247118252471183000.118000.000210.00716includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATPAF1 is not avaliable on ENCORE database.