ATG4A

General Information

Gene Name       : ATG4A
Gene ID             : ENSG00000101844.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATG4A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATG4AENSG00000101844.1712.8814.9713.93ENCSR000AEF
HepG2ATG4AENSG00000101844.171.973.522.75ENCSR985KAT
K562ATG4AENSG00000101844.1714.3016.0715.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATG4A is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATG4A RNA is bound by 6 proteins.  







eCLIP assay for ATG4A is not avaliable on ENCORE database.





6 proteins are bound to ATG4A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX107394973107395066+3'-UTR,CDS,intron-Proximal4.623634.09264K562AQR
chrX107380272107380336+3'-UTR,CDS,intron-Distal,intron-Proximal4.730164.40745K562SF3B4
chrX107392785107392871+intron-Distal5.3429112.81155K562QKI
chrX107349745107349830+intron-Distal3.726063.06015K562MATR3
chrX107391718107391828+intron-Distal3.974166.46071K562HNRNPL
chrX107391815107391875+intron-Distal3.668964.64352K562AGGF1
chrX107391727107391815+intron-Distal4.149905.95934K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATG4A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATG4A is not available on ENCORE database.

  • 87 RBPs can affect the levels of ATG4A.  








The Knockdown/knockout RNA-Seq assay for ATG4A is not available on ENCORE database.





87 RBPs can affect the gene expression of ATG4A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATG4AENSG00000101844.13151.9461076.180000.996003.462902.79580HepG2ACO1
ATG4AENSG00000101844.13292.7716099.725201.5536011.0055010.01340HepG2AKAP1
ATG4AENSG00000101844.13143.2241086.707400.723902.594901.58750HepG2AKAP8
ATG4AENSG00000101844.13183.42890113.895600.687403.082702.36380HepG2AUH
ATG4AENSG00000101844.13137.5434079.250000.795302.872601.95510HepG2BCLAF1
ATG4AENSG00000101844.13225.70250152.066500.569602.504701.93200HepG2BOP1
ATG4AENSG00000101844.13209.5571088.965301.235907.975806.76300HepG2CALR
ATG4AENSG00000101844.13167.5486078.395001.095605.113604.08090HepG2CIRBP
ATG4AENSG00000101844.13167.9002088.699400.920504.285103.51650HepG2CELF1
ATG4AENSG00000101844.13171.1980049.326401.7951011.4444010.17560HepG2DDX21
ATG4AENSG00000101844.13101.8568048.309601.076103.599502.54910HepG2DDX24
ATG4AENSG00000101844.13379.5369095.531901.9901021.6980020.12270HepG2DDX3X
ATG4AENSG00000101844.13160.0382089.650900.835903.090202.28020HepG2DDX55
ATG4AENSG00000101844.13137.7663082.057400.747402.327801.75720HepG2DDX6
ATG4AENSG00000101844.1384.5677043.901000.945802.466701.41880HepG2EFTUD2
ATG4AENSG00000101844.1398.3584042.751701.202003.694302.65780HepG2EIF3D
ATG4AENSG00000101844.13185.8086087.186101.091505.403904.51220HepG2EIF4A3
ATG4AENSG00000101844.13166.2507094.098900.821003.333602.43020HepG2EIF4G1
ATG4AENSG00000101844.13244.09870118.498401.042504.978303.97370HepG2FIP1L1
ATG4AENSG00000101844.13141.5438081.598600.794502.129501.54290HepG2G3BP1
ATG4AENSG00000101844.13171.4565087.675500.967504.670203.50770HepG2HNRNPA2B1
ATG4AENSG00000101844.13135.7600072.424200.906402.269501.63590HepG2HNRNPC
ATG4AENSG00000101844.13154.6804082.944900.899003.665302.89710HepG2IGF2BP2
ATG4AENSG00000101844.13174.9101077.833201.168102.966301.94870HepG2IGF2BP3
ATG4AENSG00000101844.13117.6274073.491000.678502.468801.77250HepG2ILF2
ATG4AENSG00000101844.13273.25170125.275901.125006.634505.33440HepG2LARP4
ATG4AENSG00000101844.1397.4732053.394600.868202.392001.34260HepG2LARP7
ATG4AENSG00000101844.13181.4566087.988401.044104.942104.07340HepG2MAGOH
ATG4AENSG00000101844.13181.2044095.916300.917704.361503.35880HepG2MSI2
ATG4AENSG00000101844.13178.3379090.567800.977404.367103.57930HepG2NCBP2
ATG4AENSG00000101844.13115.1427060.599000.926002.683601.81160HepG2PABPC1
ATG4AENSG00000101844.13166.2974080.662301.043704.826903.88490HepG2PABPC4
ATG4AENSG00000101844.13120.4076061.143300.977603.361902.21930HepG2PCBP2
ATG4AENSG00000101844.13115.7991069.196900.742702.276601.54080HepG2PRPF8
ATG4AENSG00000101844.13163.3316084.564200.949604.750804.07630HepG2PTBP1
ATG4AENSG00000101844.13151.1257090.312000.742702.469601.90250HepG2PUF60
ATG4AENSG00000101844.13198.3617077.599201.3539010.406109.34300HepG2PUS1
ATG4AENSG00000101844.13141.0176091.571600.622802.099001.54330HepG2QKI
ATG4AENSG00000101844.13107.3652059.027400.863001.996501.38780HepG2RAVER1
ATG4AENSG00000101844.13258.77780109.304501.243307.558206.80040HepG2RBM22
ATG4AENSG00000101844.13143.2735094.106600.606302.066601.58450HepG2NELFE
ATG4AENSG00000101844.13109.0921057.941300.912802.733401.79500HepG2RPS10
ATG4AENSG00000101844.1394.2309041.603601.179403.720703.01850HepG2RPS19
ATG4AENSG00000101844.13109.9836059.378600.889202.495501.73320HepG2RPS2
ATG4AENSG00000101844.13142.3513068.453801.056204.146103.20640HepG2RRP9
ATG4AENSG00000101844.1382.9108041.748900.989702.546201.64270HepG2SERBP1
ATG4AENSG00000101844.13276.61890100.664001.4583011.090409.67940HepG2SF3A3
ATG4AENSG00000101844.13165.3164088.030900.909003.282702.64480HepG2SF3B4
ATG4AENSG00000101844.13124.9891060.063401.057102.134301.30380HepG2SMNDC1
ATG4AENSG00000101844.13324.38980123.451201.3937015.1202014.19770HepG2SRFBP1
ATG4AENSG00000101844.13265.2847091.889801.5295013.9039013.01780HepG2SRSF1
ATG4AENSG00000101844.13137.8179089.148300.628401.905901.37320HepG2SRSF5
ATG4AENSG00000101844.13178.81770107.177500.738402.235501.76320HepG2SSB
ATG4AENSG00000101844.13173.62490101.404700.775703.290202.62390HepG2SUCLG1
ATG4AENSG00000101844.13195.9057089.257301.134005.440504.54210HepG2SUPV3L1
ATG4AENSG00000101844.13124.2555069.927100.829303.088402.56490HepG2TIAL1
ATG4AENSG00000101844.13113.8161070.532500.690202.358701.82970HepG2TRIM56
ATG4AENSG00000101844.13321.70090101.374201.6659014.8364013.34160HepG2U2AF1
ATG4AENSG00000101844.13165.2945093.340400.824402.206301.46380HepG2UBE2L3
ATG4AENSG00000101844.13153.8255089.273100.784903.697202.90850HepG2UPF1
ATG4AENSG00000101844.13134.5911064.892401.052404.015502.74050HepG2XRCC6
ATG4AENSG00000101844.13179.0229075.869001.238507.977506.93590HepG2ZC3H8
ATG4AENSG00000101844.13300.6051098.184001.6142020.3323019.18690HepG2ZNF622
ATG4AENSG00000101844.13619.19220797.38420-0.364903.318702.70790K562AGGF1
ATG4AENSG00000101844.131151.21380709.952800.697307.564506.67220K562AQR
ATG4AENSG00000101844.13640.18500480.947300.412503.016402.19820K562CPSF6
ATG4AENSG00000101844.131498.08540936.594400.6775010.797808.94160K562CELF1
ATG4AENSG00000101844.13784.32980599.045100.388703.882303.12870K562DDX47
ATG4AENSG00000101844.13421.70950289.794400.541103.247802.25350K562EFTUD2
ATG4AENSG00000101844.13968.96770761.769500.347003.438702.39440K562EIF4G2
ATG4AENSG00000101844.13699.42810532.570600.393102.085201.34530K562FIP1L1
ATG4AENSG00000101844.13646.42120489.339300.401502.129801.37540K562FMR1
ATG4AENSG00000101844.13569.96600414.753500.458502.679001.77890K562FTO
ATG4AENSG00000101844.13490.21230342.822400.515804.057002.39600K562FUS
ATG4AENSG00000101844.13416.40690298.644400.479503.017302.38910K562FXR1
ATG4AENSG00000101844.13468.85370322.619400.539202.761702.05480K562G3BP2
ATG4AENSG00000101844.13694.10280459.191800.596005.124304.04920K562GPKOW
ATG4AENSG00000101844.13508.81010372.754400.448803.112801.97190K562HNRNPA1
ATG4AENSG00000101844.13590.29360330.824700.835308.617007.61570K562HNRNPC
ATG4AENSG00000101844.13922.67340722.083800.353602.199801.48880K562HSPD1
ATG4AENSG00000101844.13345.06940185.174200.897906.412404.17140K562ILF3
ATG4AENSG00000101844.13551.90000392.078200.493202.438601.56810K562KRR1
ATG4AENSG00000101844.131165.64660811.979900.521505.095003.56730K562MSI2
ATG4AENSG00000101844.13635.18290507.859100.322602.791602.04210K562NSUN2
ATG4AENSG00000101844.13544.54510377.779700.527403.774202.63240K562PCBP2
ATG4AENSG00000101844.13954.77120554.039800.785107.886906.48280K562PCBP3
ATG4AENSG00000101844.13697.10880424.957200.714008.197206.84390K562POLR2G
ATG4AENSG00000101844.13537.96200282.002200.931708.640207.31010K562PRPF8
ATG4AENSG00000101844.13162.17880296.61320-0.871005.135503.85340K562PSIP1
ATG4AENSG00000101844.131178.23640831.155600.503304.940203.85320K562PUF60
ATG4AENSG00000101844.13470.06750288.370100.704804.144902.51300K562RRP9
ATG4AENSG00000101844.13380.12090241.341300.655303.173401.49040K562SERBP1
ATG4AENSG00000101844.13680.46800436.687900.639804.611503.33670K562SF3B1
ATG4AENSG00000101844.13460.37720335.421000.456703.224102.30030K562SF3B4
ATG4AENSG00000101844.13619.71140458.282900.435303.866302.46680K562SRSF7
ATG4AENSG00000101844.13890.40270639.163200.478202.623901.41350K562STAU1
ATG4AENSG00000101844.13447.57120273.095900.712604.845003.46920K562SUPV3L1
ATG4AENSG00000101844.13463.28240322.938000.520503.892802.94040K562U2AF2
ATG4AENSG00000101844.13408.74500289.009900.500002.799701.77430K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATG4A is not available on ENCORE database.





11 RBPs can affect the splicing of ATG4A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATG4AENSG00000101844.13chrX+107370022107370324107369306107369417107372010107372082-0.071000.005680.08375excludedK562SRSF1
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.188000.000490.01786excludedK562AKAP8L
SEATG4AENSG00000101844.13chrX+107370022107370324107369306107369417107372010107372082-0.223000.001350.07236excludedHepG2AKAP1
SEATG4AENSG00000101844.13chrX+1073700221073703241073693061073694171073720101073720820.222000.000030.01011includedK562HNRNPA1
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.251000.000020.00051excludedK562PUS1
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.188000.000440.03682excludedK562HNRNPUL1
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.192000.003240.08107excludedK562UTP18
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.224000.005210.07505excludedK562U2AF2
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.218000.003810.07444excludedK562RBM15
SEATG4AENSG00000101844.13chrX+107372010107372082107369306107369417107374489107374588-0.185000.001220.03256excludedK562AGGF1
A5SSATG4AENSG00000101844.13chrX+1073933811073936051073933811073935271073950311073950880.093000.000300.00681longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATG4A is not avaliable on ENCORE database.