ATG2B

General Information

Gene Name       : ATG2B
Gene ID             : ENSG00000066739.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATG2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATG2BENSG00000066739.119.708.899.29ENCSR000AEF
HepG2ATG2BENSG00000066739.113.545.054.29ENCSR985KAT
K562ATG2BENSG00000066739.117.087.627.35ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATG2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATG2B RNA is bound by 9 proteins.  







eCLIP assay for ATG2B is not avaliable on ENCORE database.





9 proteins are bound to ATG2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149678885496788939-CDS,intron-Distal,intron-Proximal4.805355.03746HepG2BCLAF1
chr149676182996761864-CDS,intron-Distal4.187843.71570HepG2BCLAF1
chr149677212096772157-CDS,intron-Distal,intron-Proximal4.422593.89826HepG2BCLAF1
chr149677787896777932-CDS,intron-Distal,intron-Proximal4.630113.89826HepG2BCLAF1
chr149676940296769433-CDS,intron-Distal3.969143.02457HepG2BCLAF1
chr149678898896789054-CDS,intron-Distal3.730924.09885HepG2BCLAF1
chr149679771496797770-CDS,intron-Distal3.998595.79432HepG2BCLAF1
chr149679471396794873-CDS,intron-Distal,intron-Proximal3.776509.50935HepG2BCLAF1
chr149676127096761329-CDS,intron-Distal,intron-Proximal5.170717.70650HepG2PRPF8
chr149678886496789011-CDS,intron-Distal,intron-Proximal4.764095.24929K562ZNF622
chr149677587996775932-CDS,intron-Distal,intron-Proximal4.723045.23259HepG2BCLAF1
chr149678413996784245-CDS,intron-Distal,intron-Proximal5.227755.90023K562SF3B4
chr149679789596797980-CDS,intron-Distal,intron-Proximal3.692386.16549HepG2U2AF2
chr149679026996790356-CDS,intron-Distal,intron-Proximal4.018593.00996K562BUD13
chr149676099296761054-intron-Distal3.934617.55880K562PTBP1
chr149678864396788697-intron-Distal,intron-Proximal4.185133.45799HepG2U2AF2
chr149678610196786165-intron-Distal3.968444.21358HepG2U2AF2
chr149680294396802969-intron-Distal4.489514.31512K562KHSRP
chr149678834596788388-intron-Distal,intron-Proximal3.359093.32861HepG2U2AF2
chr149675660596756727-intron-Distal,intron-Proximal3.751803.42844K562KHSRP
chr149676118996761261-intron-Distal,intron-Proximal4.419623.89565K562PRPF8
chr149676099596761068-intron-Distal4.108617.62792HepG2PTBP1
chr149680766596807832-intron-Distal,intron-Proximal3.001343.31456K562TIA1
chr149676117896761259-intron-Distal,intron-Proximal4.331493.66668K562KHSRP
chr149678467796784750-intron-Distal,intron-Proximal3.621704.97118HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATG2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATG2B is not available on ENCORE database.

  • 97 RBPs can affect the levels of ATG2B.  








The Knockdown/knockout RNA-Seq assay for ATG2B is not available on ENCORE database.





97 RBPs can affect the gene expression of ATG2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATG2BENSG00000066739.71356.073901039.405300.383605.151504.26240HepG2AUH
ATG2BENSG00000066739.7323.38630545.65120-0.754704.481103.28820HepG2BCCIP
ATG2BENSG00000066739.71200.54230761.757000.656207.807206.86460HepG2BOP1
ATG2BENSG00000066739.7757.60780596.465000.344902.625901.43010HepG2BUD13
ATG2BENSG00000066739.7895.73930679.835600.397803.400902.55700HepG2CALR
ATG2BENSG00000066739.7906.60280663.984200.449206.003705.09320HepG2CKAP4
ATG2BENSG00000066739.71703.24640958.427900.829406.370905.21040HepG2CNOT7
ATG2BENSG00000066739.7870.15180614.179300.502507.268206.02470HepG2DDX19B
ATG2BENSG00000066739.7443.16570607.29840-0.454603.192102.46700HepG2DDX21
ATG2BENSG00000066739.7751.60370594.073300.339202.255601.44130HepG2DDX24
ATG2BENSG00000066739.71390.77960794.166200.808305.147103.82580HepG2DDX59
ATG2BENSG00000066739.71180.85660786.029400.587109.081607.72940HepG2EIF4G1
ATG2BENSG00000066739.7875.51160689.574500.344302.388101.37200HepG2ESF1
ATG2BENSG00000066739.71488.798301193.400000.319004.088703.38300HepG2ETF1
ATG2BENSG00000066739.71387.60170803.696100.787808.188506.94260HepG2FIP1L1
ATG2BENSG00000066739.7720.51210402.346100.840509.754908.32720HepG2FUBP3
ATG2BENSG00000066739.71250.54810692.493500.852609.839708.62260HepG2G3BP1
ATG2BENSG00000066739.7826.02710655.940800.332502.737402.02370HepG2HNRNPF
ATG2BENSG00000066739.7971.75160701.177300.470703.734602.93180HepG2HNRNPK
ATG2BENSG00000066739.7863.67010645.908700.419103.416502.61860HepG2IGF2BP1
ATG2BENSG00000066739.7958.91020750.934100.352601.923701.39310HepG2MATR3
ATG2BENSG00000066739.7494.97810650.65390-0.394502.372001.61960HepG2MSI2
ATG2BENSG00000066739.7575.81930875.94240-0.605203.053802.11880HepG2PABPC1
ATG2BENSG00000066739.7885.80360666.893700.409404.414603.67800HepG2PCBP1
ATG2BENSG00000066739.7873.81030713.639900.292002.440101.70840HepG2PRPF4
ATG2BENSG00000066739.7581.51860414.001000.490103.354302.47250HepG2PRPF8
ATG2BENSG00000066739.7513.50950754.21210-0.554604.398503.66740HepG2PUF60
ATG2BENSG00000066739.71282.75070734.936700.8034014.1046012.85120HepG2QKI
ATG2BENSG00000066739.71320.02670711.462200.891606.184805.15610HepG2RAVER1
ATG2BENSG00000066739.71063.48530859.539000.307102.400101.59500HepG2RBM15
ATG2BENSG00000066739.7840.23450997.45660-0.247501.908401.45700HepG2RBM22
ATG2BENSG00000066739.71096.42480666.996300.717009.542108.34640HepG2RBM25
ATG2BENSG00000066739.7927.40750755.202600.296202.438001.92480HepG2NELFE
ATG2BENSG00000066739.71049.95850703.357400.577906.682705.78470HepG2RECQL
ATG2BENSG00000066739.71164.95580698.663800.737505.260803.98230HepG2RPS10
ATG2BENSG00000066739.7698.24950409.549100.769606.712005.54710HepG2RRP9
ATG2BENSG00000066739.7615.30690450.580500.449403.004602.02320HepG2SERBP1
ATG2BENSG00000066739.71018.96510706.504600.528207.022606.14900HepG2SF3B4
ATG2BENSG00000066739.7876.50990723.108000.277501.969201.35930HepG2SLBP
ATG2BENSG00000066739.7469.34400672.61810-0.519106.345805.43530HepG2SMN1
ATG2BENSG00000066739.71411.07590833.322200.759705.717804.58560HepG2SNRNP70
ATG2BENSG00000066739.71756.687801126.581900.6408015.1338014.21060HepG2SRFBP1
ATG2BENSG00000066739.7890.54310737.432400.272102.193201.75910HepG2SRSF1
ATG2BENSG00000066739.7840.73620644.459900.383503.558502.78350HepG2SRSF7
ATG2BENSG00000066739.7972.44730599.935900.6967012.5854011.55870HepG2SRSF9
ATG2BENSG00000066739.7677.16160534.083900.342301.968701.38360HepG2SUPV3L1
ATG2BENSG00000066739.71296.05470662.817900.9673021.3081019.95780HepG2TAF15
ATG2BENSG00000066739.7847.46480609.055400.476504.546703.48240HepG2TIA1
ATG2BENSG00000066739.7444.67160629.32570-0.501104.332303.73550HepG2TIAL1
ATG2BENSG00000066739.7479.26110634.95800-0.405803.860803.21710HepG2TRIM56
ATG2BENSG00000066739.71264.62110687.620700.8789012.1297010.78570HepG2U2AF1
ATG2BENSG00000066739.71035.34140779.839300.408802.262301.51030HepG2UBE2L3
ATG2BENSG00000066739.7442.13300315.532900.486603.130602.32460HepG2UCHL5
ATG2BENSG00000066739.7616.40950853.62190-0.469705.542504.74280HepG2UTP3
ATG2BENSG00000066739.7359.15770525.74550-0.549702.756802.03250HepG2XRN2
ATG2BENSG00000066739.7937.55540704.269900.412705.194604.32350HepG2ZC3H8
ATG2BENSG00000066739.71177.05580972.406900.275503.261902.68250HepG2ZNF622
ATG2BENSG00000066739.71351.957302391.94870-0.8231025.2656023.66260K562AGGF1
ATG2BENSG00000066739.72121.099002628.38060-0.309402.677101.71530K562AKAP8
ATG2BENSG00000066739.71711.690102488.92880-0.540106.926905.85420K562AKAP8L
ATG2BENSG00000066739.71169.868301506.07260-0.364403.003701.70920K562APOBEC3C
ATG2BENSG00000066739.72074.145802611.48100-0.332404.295903.13010K562ATP5C1
ATG2BENSG00000066739.7670.48620810.80760-0.274202.270601.40190K562BCLAF1
ATG2BENSG00000066739.72066.711502858.51750-0.467906.859304.98270K562CCDC124
ATG2BENSG00000066739.7912.768601396.13800-0.6131010.748008.58130K562CPEB4
ATG2BENSG00000066739.7741.26290927.13390-0.322802.379201.64680K562CPSF6
ATG2BENSG00000066739.7541.29110820.46740-0.600006.065004.45240K562DDX3X
ATG2BENSG00000066739.7954.940501444.77520-0.5974011.3554010.13290K562DDX47
ATG2BENSG00000066739.7588.63740771.21500-0.389802.332101.49480K562EFTUD2
ATG2BENSG00000066739.7733.34350901.13120-0.297202.801301.58320K562EIF2S1
ATG2BENSG00000066739.7537.39330923.29240-0.780807.525306.22350K562EIF3G
ATG2BENSG00000066739.7745.704701107.85850-0.571105.852704.58830K562FIP1L1
ATG2BENSG00000066739.7624.12310891.40050-0.514206.194905.34310K562FXR1
ATG2BENSG00000066739.71203.49890916.174900.393402.217401.59510K562G3BP2
ATG2BENSG00000066739.7563.70820773.18080-0.455902.821701.38480K562GEMIN5
ATG2BENSG00000066739.7613.713901233.79450-1.0075017.1777015.25290K562GRSF1
ATG2BENSG00000066739.7505.06600667.88530-0.403102.764101.62150K562HNRNPF
ATG2BENSG00000066739.71035.561001305.65230-0.334402.805501.74140K562HNRNPL
ATG2BENSG00000066739.7391.02230911.20800-1.2205015.1062012.54830K562HNRNPM
ATG2BENSG00000066739.71267.599301056.306200.263002.282101.46940K562HNRNPU
ATG2BENSG00000066739.71172.760401502.05100-0.357002.928202.11110K562HSPD1
ATG2BENSG00000066739.7834.287801234.44970-0.565306.758605.41730K562MAGOH
ATG2BENSG00000066739.7807.467601040.56760-0.365904.185903.20940K562MTPAP
ATG2BENSG00000066739.7667.37140855.96280-0.359102.913701.65250K562NCBP2
ATG2BENSG00000066739.7563.95250809.07560-0.520703.482401.31450K562PA2G4
ATG2BENSG00000066739.71074.780601637.88680-0.607802.717501.73920K562PABPN1
ATG2BENSG00000066739.71735.384601206.684300.524107.138804.89910K562PCBP1
ATG2BENSG00000066739.7773.431901098.34940-0.506004.896503.58490K562PCBP2
ATG2BENSG00000066739.7788.684601257.60760-0.673207.985506.42970K562PPIG
ATG2BENSG00000066739.7460.69040750.47760-0.704006.126905.01010K562PRPF8
ATG2BENSG00000066739.7463.826401199.34730-1.3706033.5291031.30720K562PTBP1
ATG2BENSG00000066739.71343.730601862.27830-0.470804.716803.65490K562PUF60
ATG2BENSG00000066739.71015.390502468.35120-1.2815030.3478028.52140K562PUS1
ATG2BENSG00000066739.71558.893302405.02250-0.6255012.3967011.14510K562RBM15
ATG2BENSG00000066739.7593.286101150.01540-0.9549014.9900012.84170K562RBM22
ATG2BENSG00000066739.7649.23090869.64760-0.421703.469001.96090K562RBM25
ATG2BENSG00000066739.7843.113301210.21080-0.521504.865903.36930K562NELFE
ATG2BENSG00000066739.7465.50460764.54320-0.715805.571304.41000K562RPS19
ATG2BENSG00000066739.7504.42320767.43800-0.605403.622602.08420K562RRP9
ATG2BENSG00000066739.7906.242501140.84390-0.332103.325602.43550K562SF3A3
ATG2BENSG00000066739.7772.47770953.27730-0.303402.312401.53290K562SF3B4
ATG2BENSG00000066739.71171.46290847.849100.466303.513501.68020K562SND1
ATG2BENSG00000066739.7540.813401175.76340-1.1204021.8214019.84430K562SRSF1
ATG2BENSG00000066739.7525.09880726.79850-0.469002.783201.76400K562SUPV3L1
ATG2BENSG00000066739.7793.303801189.94240-0.584905.928604.86540K562TARDBP
ATG2BENSG00000066739.7439.32800644.93670-0.553903.876102.75890K562TIAL1
ATG2BENSG00000066739.7974.837401198.26680-0.297703.063101.72440K562TROVE2
ATG2BENSG00000066739.71321.07470888.764600.571703.516302.25010K562U2AF1
ATG2BENSG00000066739.71665.71700917.673500.8600018.0670015.95430K562U2AF2
ATG2BENSG00000066739.71005.699101225.89540-0.285603.142102.37890K562UPF1
ATG2BENSG00000066739.71634.772602502.63390-0.614403.099301.69610K562UTP18
ATG2BENSG00000066739.7895.113901090.80420-0.285203.068102.17800K562WDR43
ATG2BENSG00000066739.7555.32080783.06180-0.495803.503302.08310K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATG2B is not available on ENCORE database.





6 RBPs can affect the splicing of ATG2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATG2BENSG00000066739.7chr14-967564339675655096755992967561429675677296756927-0.132000.000490.06900excludedK562DROSHA
SEATG2BENSG00000066739.7chr14-967583659675843596757936967580199676129696761504-0.174000.008740.09493excludedK562PUS1
SEATG2BENSG00000066739.7chr14-967564339675655096755992967561429675677296756927-0.135000.000090.01258excludedK562HNRNPUL1
A3SSATG2BENSG00000066739.7chr14-9677966596779801967796659677977296781490967815710.156000.016800.08229longerK562AQR
RIATG2BENSG00000066739.7chr14-9679864196798863967986419679874796798837967988630.133000.000000.00002includedK562UTP18
MXEATG2BENSG00000066739.7chr14-9679883796798992968000249680021096798641967987479680074196800838-0.305000.001790.025312includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATG2B is not avaliable on ENCORE database.