ARRDC1

General Information

Gene Name       : ARRDC1
Gene ID             : ENSG00000197070.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARRDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARRDC1ENSG00000197070.130.876.333.60ENCSR000AEF
HepG2ARRDC1ENSG00000197070.1324.069.0116.54ENCSR985KAT
K562ARRDC1ENSG00000197070.1317.5512.4815.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARRDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARRDC1 RNA is bound by 19 proteins.  







eCLIP assay for ARRDC1 is not avaliable on ENCORE database.





19 proteins are bound to ARRDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9140507666140507738+3'-UTR,intron-Distal3.253263.59783HepG2HNRNPK
chr9140507660140507784+3'-UTR,intron-Distal,intron-Proximal4.667235.33971K562HNRNPK
chr9140508173140508223+3'-UTR,CDS,intron-Proximal3.261604.02291HepG2GRWD1
chr9140508186140508225+3'-UTR,CDS,intron-Proximal4.067343.06595HepG2BCLAF1
chr9140508078140508150+3'-UTR,CDS4.381335.42152HepG2GRWD1
chr9140507871140507929+3'-UTR,CDS,intron-Distal,intron-Proximal3.493243.67894HepG2AQR
chr9140507878140507935+3'-UTR,CDS,intron-Distal,intron-Proximal5.077074.13847K562AQR
chr9140500129140500186+5'-UTR,CDS4.464234.78731HepG2NCBP2
chr9140507457140507549+CDS,intron-Proximal4.5425312.08528K562AQR
chr9140507475140507531+CDS,intron-Proximal3.865588.17589HepG2PRPF8
chr9140507458140507520+CDS,intron-Proximal3.176913.20886K562PRPF8
chr9140508528140508633+CDS,intron-Proximal4.0317810.42618HepG2PPIG
chr9140508796140508855+CDS4.448788.09084HepG2PPIG
chr9140509436140509475+CDS,intron-Proximal3.423924.51003HepG2PPIG
chr9140509205140509268+CDS3.063203.00343HepG2GRWD1
chr9140507451140507541+CDS,intron-Proximal4.711504.28193HepG2AQR
chr9140508220140508230+CDS,intron-Proximal4.395796.77156K562AQR
chr9140509230140509259+CDS3.515934.41267HepG2PPIG
chr9140507179140507274+intron-Distal,intron-Proximal5.392235.10912HepG2SF3A3
chr9140502747140502814+intron-Distal3.863244.51839K562EWSR1
chr9140502754140502811+intron-Distal4.240144.09073K562SLTM
chr9140501054140501102+intron-Distal3.233375.82968HepG2CSTF2T
chr9140506564140506613+intron-Distal3.892223.31905K562NONO
chr9140503480140503528+intron-Distal3.283673.77567K562NONO
chr9140501439140501508+intron-Distal5.045857.85700K562EWSR1
chr9140501222140501270+intron-Distal3.247837.33122HepG2CSTF2T
chr9140500958140501006+intron-Distal3.620644.94042K562NONO
chr9140506924140507075+intron-Distal,intron-Proximal3.514104.46957K562TIA1
chr9140502238140502305+intron-Distal3.537844.50953K562CSTF2T
chr9140501666140501727+intron-Distal3.226514.40213K562EWSR1
chr9140501579140501628+intron-Distal4.069913.59342K562CSTF2T
chr9140501763140501816+intron-Distal4.701903.20137K562DDX52
chr9140503291140503334+intron-Distal3.030193.14895K562NONO
chr9140500903140500983+intron-Distal5.223689.01779K562EWSR1
chr9140507209140507281+intron-Distal,intron-Proximal5.130536.34931HepG2XPO5
chr9140501456140501523+intron-Distal4.538175.59071K562NONO
chr9140503265140503345+intron-Distal4.811475.27179K562EWSR1
chr9140501227140501287+intron-Distal4.821696.87697K562NONO
chr9140500894140500938+intron-Distal3.470863.80158K562NONO
chr9140506155140506318+intron-Distal4.281324.70114K562FUS
chr9140501299140501363+intron-Distal3.952775.44474HepG2FAM120A
chr9140507040140507101+intron-Distal,intron-Proximal4.283014.46290K562EWSR1
chr9140500488140500522+intron-Distal4.252114.86859HepG2CSTF2T
chr9140506484140506533+intron-Distal3.105933.48399HepG2CSTF2T
chr9140503475140503519+intron-Distal3.573255.00766K562EWSR1
chr9140500677140500758+intron-Distal3.600316.37278HepG2XPO5
chr9140503293140503353+intron-Distal4.059383.43867K562CSTF2T
chr9140501912140501969+intron-Distal4.302599.17322HepG2CSTF2T
chr9140502211140502295+intron-Distal3.980976.29987K562EWSR1
chr9140500969140501020+intron-Distal3.208863.31456K562TIA1
chr9140501282140501393+intron-Distal3.928943.52365K562FUS
chr9140500785140500809+intron-Distal4.269453.67126HepG2NKRF
chr9140503294140503362+intron-Distal3.947883.19904K562TIA1
chr9140500961140501023+intron-Distal4.993758.29600HepG2CSTF2T
chr9140506162140506252+intron-Distal3.434256.09076HepG2NKRF
chr9140501185140501282+intron-Distal3.849053.55447K562FUS
chr9140501742140501819+intron-Distal3.729143.52365K562FUS
chr9140501006140501090+intron-Distal4.400138.40323K562NONO
chr9140501458140501504+intron-Distal3.816843.29554HepG2GTF2F1
chr9140501292140501361+intron-Distal4.576154.72743K562NONO
chr9140500434140500530+intron-Distal4.587714.75882K562SLTM
chr9140508230140508265+intron-Proximal5.8311512.06330K562AQR
chr9140508241140508290+intron-Proximal3.411557.29769HepG2PRPF8
chr9140500289140500323+intron-Proximal3.507314.54206HepG2PRPF8
chr9140508226140508282+intron-Proximal3.469394.23459K562PRPF8
chr9140508234140508277+intron-Proximal4.663765.58015HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARRDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARRDC1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of ARRDC1.  








The Knockdown/knockout RNA-Seq assay for ARRDC1 is not available on ENCORE database.





65 RBPs can affect the gene expression of ARRDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARRDC1ENSG00000197070.9331.80330411.48120-0.310501.874601.35630HepG2ACO1
ARRDC1ENSG00000197070.9366.46470180.065701.025104.866203.61870HepG2BCCIP
ARRDC1ENSG00000197070.9293.10930156.422800.905904.405903.29490HepG2BCLAF1
ARRDC1ENSG00000197070.9563.69050380.589100.566606.721005.51040HepG2DDX19B
ARRDC1ENSG00000197070.9310.61380177.063000.810803.008202.20770HepG2DDX55
ARRDC1ENSG00000197070.9255.10990161.821000.656603.971903.14230HepG2DNAJC21
ARRDC1ENSG00000197070.9281.32790160.431400.810203.096502.41260HepG2DNAJC2
ARRDC1ENSG00000197070.9338.28910224.291400.592803.756302.93150HepG2HNRNPF
ARRDC1ENSG00000197070.9224.42470340.23090-0.600303.429702.37910HepG2HNRNPM
ARRDC1ENSG00000197070.9264.76920180.531400.552403.352002.69050HepG2HNRNPU
ARRDC1ENSG00000197070.9374.66570220.858900.762405.710704.70770HepG2IGF2BP1
ARRDC1ENSG00000197070.9257.27850184.404600.480402.695201.97160HepG2ILF2
ARRDC1ENSG00000197070.9555.09400359.797000.625402.510601.90620HepG2NCBP2
ARRDC1ENSG00000197070.9201.54150120.199800.745502.928901.43530HepG2NOLC1
ARRDC1ENSG00000197070.9303.37180161.017300.913807.882306.69060HepG2PPIL4
ARRDC1ENSG00000197070.9118.48550203.51340-0.780402.830001.60070HepG2PRPF6
ARRDC1ENSG00000197070.9428.97700329.866900.378902.510601.98530HepG2PTBP1
ARRDC1ENSG00000197070.9423.05160282.098100.584505.379804.60900HepG2PUM1
ARRDC1ENSG00000197070.996.34460186.75970-0.954903.295702.52880HepG2RAVER1
ARRDC1ENSG00000197070.9371.61430484.63180-0.383102.516002.01560HepG2RBM22
ARRDC1ENSG00000197070.9513.50300324.202100.663403.548202.79170HepG2RBM25
ARRDC1ENSG00000197070.9319.90260228.605200.484702.189301.31720HepG2RBM27
ARRDC1ENSG00000197070.9316.23120210.830000.584802.857202.04460HepG2RPS2
ARRDC1ENSG00000197070.9291.08060143.845201.016806.019104.84400HepG2RPS3A
ARRDC1ENSG00000197070.9289.22870160.763500.847202.825802.17620HepG2SAFB2
ARRDC1ENSG00000197070.9572.76200343.388200.738008.533807.58450HepG2SF3B4
ARRDC1ENSG00000197070.9431.75110254.803500.760708.091006.98690HepG2SLBP
ARRDC1ENSG00000197070.9259.16660187.464400.467202.114801.54150HepG2SMN1
ARRDC1ENSG00000197070.9387.77770547.35490-0.497204.710604.10720HepG2SRFBP1
ARRDC1ENSG00000197070.9186.13910358.44160-0.945408.206407.49140HepG2SRSF1
ARRDC1ENSG00000197070.9326.85300220.373100.568603.531102.75820HepG2SRSF7
ARRDC1ENSG00000197070.9204.56180125.170000.708503.114001.94300HepG2STIP1
ARRDC1ENSG00000197070.9375.89680298.403100.333001.861201.33210HepG2SUCLG1
ARRDC1ENSG00000197070.9277.92650176.230800.657102.096301.49660HepG2SUPV3L1
ARRDC1ENSG00000197070.9156.72340322.23320-1.039908.936208.02170HepG2TAF15
ARRDC1ENSG00000197070.9278.60190179.257800.636102.331501.65890HepG2TARDBP
ARRDC1ENSG00000197070.9216.53520118.101400.874503.977002.80770HepG2TFIP11
ARRDC1ENSG00000197070.9333.17210175.370900.925807.784207.02360HepG2TIAL1
ARRDC1ENSG00000197070.9346.04010176.991300.967205.401404.66470HepG2TRIM56
ARRDC1ENSG00000197070.9464.79830274.799100.758104.628303.52610HepG2UBE2L3
ARRDC1ENSG00000197070.9200.27710104.082600.944204.508003.53770HepG2UCHL5
ARRDC1ENSG00000197070.9612.03180466.395600.392003.471002.70270HepG2UPF1
ARRDC1ENSG00000197070.9268.81190161.287300.736902.189201.30290HepG2UPF2
ARRDC1ENSG00000197070.9246.96270450.28580-0.866508.976307.99810HepG2UTP3
ARRDC1ENSG00000197070.9229.43760128.849000.832304.098302.75800HepG2XPO5
ARRDC1ENSG00000197070.9376.65510173.480901.118407.174406.01960HepG2XRN2
ARRDC1ENSG00000197070.9302.44270522.46160-0.788706.123405.30960K562AQR
ARRDC1ENSG00000197070.9306.09700221.497300.466602.404701.51230K562BCLAF1
ARRDC1ENSG00000197070.9577.71830437.824600.399902.944601.80020K562CPEB4
ARRDC1ENSG00000197070.9233.92610155.831500.586002.751401.97180K562CPSF6
ARRDC1ENSG00000197070.9551.63240414.000800.414003.166201.86400K562DDX21
ARRDC1ENSG00000197070.9361.92530247.883000.545903.416202.24260K562DDX3X
ARRDC1ENSG00000197070.9441.17170338.459800.382302.464401.77850K562EIF2S2
ARRDC1ENSG00000197070.9180.21580258.96950-0.523102.491001.71200K562EIF4A3
ARRDC1ENSG00000197070.914.9429069.00390-2.207206.945005.71160K562G3BP2
ARRDC1ENSG00000197070.9599.42460451.043600.410202.630301.89270K562GRSF1
ARRDC1ENSG00000197070.9697.40230459.024900.603306.727105.32880K562HNRNPU
ARRDC1ENSG00000197070.9265.09580144.973000.870604.040602.70220K562IGF2BP2
ARRDC1ENSG00000197070.9220.83250145.219800.604602.615201.76720K562METAP2
ARRDC1ENSG00000197070.9414.80750648.69200-0.645102.490301.71790K562PUF60
ARRDC1ENSG00000197070.9294.84540462.94460-0.650904.398803.73690K562PUS1
ARRDC1ENSG00000197070.9216.87450141.642400.614502.207201.46000K562RBM22
ARRDC1ENSG00000197070.9123.5669071.696000.785202.996002.10490K562SF3B4
ARRDC1ENSG00000197070.9499.27850276.621500.851803.590002.02800K562SFPQ
ARRDC1ENSG00000197070.9147.90530260.46710-0.816402.647301.45510K562SNRNP200
ARRDC1ENSG00000197070.9255.48270144.788400.819204.351502.98180K562SRSF4
ARRDC1ENSG00000197070.9216.87320297.04620-0.453802.269401.52480K562SYNCRIP
ARRDC1ENSG00000197070.9320.81990146.651401.129309.544408.10730K562TARDBP
ARRDC1ENSG00000197070.9264.20800141.475400.901005.463104.25440K562TIA1
ARRDC1ENSG00000197070.9223.32510138.951100.684502.872901.75480K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARRDC1 is not available on ENCORE database.





11 RBPs can affect the splicing of ARRDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSARRDC1ENSG00000197070.9chr9+1405078641405079621405079111405079621405073471405074580.191000.002200.01400longerK562AQR
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.340000.000390.03017includedK562PPIL4
RIARRDC1ENSG00000197070.9chr9+140507347140507962140507347140507458140507864140507962-0.387000.000970.07033excludedK562HNRNPU
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.603000.000250.00284includedHepG2U2AF2
RIARRDC1ENSG00000197070.9chr9+1405080661405086661405080661405082211405084831405086660.123000.001190.01665includedK562PRPF8
RIARRDC1ENSG00000197070.9chr9+1405080661405086661405080661405082211405084831405086660.052000.003110.03400includedHepG2QKI
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.258000.000200.00348includedHepG2QKI
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.356000.000050.00105includedHepG2TAF15
RIARRDC1ENSG00000197070.9chr9+1405080661405086661405080661405082211405084831405086660.138000.000060.00106includedHepG2U2AF1
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.244000.000750.00912includedHepG2U2AF1
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.299000.000010.00011includedHepG2SF3B4
RIARRDC1ENSG00000197070.9chr9+1405080661405086661405080661405082211405084831405086660.118000.000630.00856includedK562EFTUD2
RIARRDC1ENSG00000197070.9chr9+1405073471405079621405073471405074581405079111405079620.206000.009380.05087includedK562AQR
RIARRDC1ENSG00000197070.9chr9+1405080661405086661405080661405082211405084831405086660.083000.007830.09285includedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARRDC1 is not avaliable on ENCORE database.