ARHGEF17

General Information

Gene Name       : ARHGEF17
Gene ID             : ENSG00000110237.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARHGEF17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARHGEF17ENSG00000110237.41.111.291.20ENCSR000AEF
HepG2ARHGEF17ENSG00000110237.427.4010.3818.89ENCSR985KAT
K562ARHGEF17ENSG00000110237.40.120.070.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARHGEF17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARHGEF17 RNA is bound by 11 proteins.  







eCLIP assay for ARHGEF17 is not avaliable on ENCORE database.





11 proteins are bound to ARHGEF17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117301938773019505+5'-UTR3.973517.55550HepG2EIF3H
chr117306697673067041+CDS,intron-Proximal5.280789.61125HepG2PRPF8
chr117302211573022256+CDS3.5871213.07400HepG2BUD13
chr117307524273075285+CDS,intron-Proximal3.485924.99842HepG2PPIG
chr117307556573075633+CDS3.436954.24993HepG2PPIG
chr117302247873022512+CDS4.050324.10591HepG2EIF3H
chr117307658073076609+CDS3.849944.96634HepG2PPIG
chr117306664273066669+CDS4.106213.49332HepG2PPIG
chr117307672273076738+CDS,intron-Proximal3.313733.59112HepG2PPIG
chr117302071373020755+CDS5.415956.73606HepG2EIF3H
chr117302267673022712+CDS3.089503.07152HepG2HLTF
chr117302208273022150+CDS5.173248.32506HepG2EIF3H
chr117302215073022346+CDS4.2664612.15414HepG2EIF3H
chr117307336673073489+CDS,intron-Proximal3.444404.09623HepG2SF3B4
chr117301969473019771+CDS5.016779.77289HepG2EIF3H
chr117302063073020656+CDS4.981574.29511HepG2EIF3H
chr117302152273021601+CDS4.143796.07514HepG2EIF3H
chr117307515773075223+CDS,intron-Proximal3.878235.64484HepG2PRPF8
chr117302094273020977+CDS5.366186.24363HepG2EIF3H
chr117301970273019811+CDS3.102867.72354HepG2DDX3X
chr117305558773055662+intron-Distal4.270033.94684HepG2CSTF2T
chr117305440073054466+intron-Distal,intron-Proximal4.071817.10319HepG2CSTF2T
chr117305467973054737+intron-Distal3.438243.96999HepG2CSTF2T
chr117305426673054310+intron-Distal4.185064.19345HepG2CSTF2T
chr117305387073053988+intron-Distal4.6287610.30165HepG2CSTF2T
chr117305443173054509+intron-Distal4.061933.38470HepG2NKRF
chr117305431073054374+intron-Distal,intron-Proximal3.902326.61028HepG2CSTF2T
chr117305654173056600+intron-Distal3.898413.19526HepG2CSTF2T
chr117307397473074050+intron-Distal4.004563.91671HepG2RBFOX2
chr117305446673054535+intron-Distal4.109846.61028HepG2CSTF2T
chr117306670673066779+intron-Proximal5.874629.61799HepG2EFTUD2
chr117307340273073472+intron-Proximal4.153157.65747HepG2EFTUD2
chr117306702073067081+intron-Proximal5.432636.68817HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARHGEF17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARHGEF17 is not available on ENCORE database.

  • 72 RBPs can affect the levels of ARHGEF17.  








The Knockdown/knockout RNA-Seq assay for ARHGEF17 is not available on ENCORE database.





72 RBPs can affect the gene expression of ARHGEF17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARHGEF17ENSG00000110237.3353.83920562.66680-0.669204.529903.18990HepG2AATF
ARHGEF17ENSG00000110237.3700.52570977.72180-0.481006.828205.95940HepG2ACO1
ARHGEF17ENSG00000110237.3779.71740530.930000.554303.795002.64990HepG2ADAR
ARHGEF17ENSG00000110237.3568.830101219.97760-1.100804.999904.31100HepG2AKAP1
ARHGEF17ENSG00000110237.3964.078301384.97690-0.522608.612907.51460HepG2AUH
ARHGEF17ENSG00000110237.3420.33340713.54220-0.763506.570505.44880HepG2CALR
ARHGEF17ENSG00000110237.31570.881301056.070800.572804.285903.05970HepG2CCAR1
ARHGEF17ENSG00000110237.3780.28930544.460600.519105.505704.07000HepG2YBX3
ARHGEF17ENSG00000110237.3570.74960358.965800.668904.782503.41900HepG2CSTF2
ARHGEF17ENSG00000110237.3347.21440576.36940-0.731202.629501.32270HepG2CSTF2T
ARHGEF17ENSG00000110237.3814.11660620.172100.392502.866802.17770HepG2DDX21
ARHGEF17ENSG00000110237.31205.056701575.71910-0.386903.358101.93060HepG2DDX47
ARHGEF17ENSG00000110237.31437.41530935.399400.619706.684305.71880HepG2DKC1
ARHGEF17ENSG00000110237.3761.08680529.896900.522207.132806.15420HepG2DNAJC2
ARHGEF17ENSG00000110237.3515.38730664.85660-0.367402.184301.37180HepG2EIF3D
ARHGEF17ENSG00000110237.3778.36760585.995300.409503.367302.19200HepG2EIF3G
ARHGEF17ENSG00000110237.31789.913001066.057600.747507.806506.73420HepG2EIF4A3
ARHGEF17ENSG00000110237.32176.079601590.202600.452407.613506.69960HepG2ETF1
ARHGEF17ENSG00000110237.3709.89690955.35590-0.428403.798302.81880HepG2EWSR1
ARHGEF17ENSG00000110237.31116.72830846.950100.398803.169602.33150HepG2FUBP3
ARHGEF17ENSG00000110237.31300.14220998.076400.381301.889901.33480HepG2G3BP1
ARHGEF17ENSG00000110237.31488.585201060.087100.489702.786801.89300HepG2G3BP2
ARHGEF17ENSG00000110237.3767.52450591.955500.374602.385401.56100HepG2GEMIN5
ARHGEF17ENSG00000110237.31719.77790728.992101.2381013.9491012.62030HepG2GPKOW
ARHGEF17ENSG00000110237.31237.90900933.408200.407205.524104.19340HepG2HDGF
ARHGEF17ENSG00000110237.31019.79490539.745000.9178013.2256011.98510HepG2HNRNPA1
ARHGEF17ENSG00000110237.3996.39670600.364700.730802.290001.65390HepG2HNRNPC
ARHGEF17ENSG00000110237.31202.99740746.737000.6879013.0301011.62750HepG2HNRNPF
ARHGEF17ENSG00000110237.3676.932501011.53810-0.579502.116301.49990HepG2HNRNPK
ARHGEF17ENSG00000110237.3601.20330787.25070-0.389003.244502.22280HepG2HNRNPM
ARHGEF17ENSG00000110237.31079.17780735.322700.553406.519905.45100HepG2IGF2BP1
ARHGEF17ENSG00000110237.3917.47410609.198700.5907010.080708.76800HepG2ILF2
ARHGEF17ENSG00000110237.31752.353301115.725900.651205.552604.36190HepG2LARP4
ARHGEF17ENSG00000110237.3497.93500695.80030-0.482702.337801.36900HepG2METAP2
ARHGEF17ENSG00000110237.3746.82390923.37970-0.306202.369701.61780HepG2MSI2
ARHGEF17ENSG00000110237.32153.149101108.028600.9584011.6352010.37910HepG2NCBP2
ARHGEF17ENSG00000110237.3669.61660493.047900.441502.707001.30840HepG2NIP7
ARHGEF17ENSG00000110237.31163.82840817.792100.509006.299905.15110HepG2NOL12
ARHGEF17ENSG00000110237.31070.72870616.965400.795205.784504.72610HepG2NSUN2
ARHGEF17ENSG00000110237.31029.74780468.167101.137103.741201.60900HepG2NUFIP2
ARHGEF17ENSG00000110237.3989.57410531.937500.8955017.0298015.30050HepG2PPIL4
ARHGEF17ENSG00000110237.3740.21070440.714900.748005.709504.59380HepG2PRPF8
ARHGEF17ENSG00000110237.3901.715101056.14380-0.228101.854401.38900HepG2PTBP1
ARHGEF17ENSG00000110237.31330.87200780.649200.7695011.3562010.25960HepG2PUF60
ARHGEF17ENSG00000110237.31519.766201143.887700.409804.682003.90100HepG2QKI
ARHGEF17ENSG00000110237.3733.12860490.344400.580203.244801.38880HepG2RBM14
ARHGEF17ENSG00000110237.3846.43330534.002500.664404.601203.23100HepG2RCC2
ARHGEF17ENSG00000110237.31427.344301175.409200.280102.742702.20310HepG2NELFE
ARHGEF17ENSG00000110237.31504.940601094.693000.459104.386303.63370HepG2RECQL
ARHGEF17ENSG00000110237.3934.18540611.041500.612302.208501.36270HepG2RPS10
ARHGEF17ENSG00000110237.3993.00530606.434000.711406.725105.51230HepG2RPS2
ARHGEF17ENSG00000110237.3850.26790619.088200.457702.685401.62600HepG2RPS5
ARHGEF17ENSG00000110237.3636.23160531.117700.260401.880601.33220HepG2SAFB2
ARHGEF17ENSG00000110237.3951.46170455.145601.063703.350601.82400HepG2SF1
ARHGEF17ENSG00000110237.31112.65230748.509000.5718010.264009.04720HepG2SLBP
ARHGEF17ENSG00000110237.31014.999901501.14810-0.5646011.5057010.67270HepG2SRFBP1
ARHGEF17ENSG00000110237.3910.364501147.75650-0.334303.659503.13490HepG2SRSF1
ARHGEF17ENSG00000110237.31245.74730770.770400.692509.071608.02630HepG2SRSF5
ARHGEF17ENSG00000110237.3913.09970733.644500.315603.006902.28620HepG2SRSF7
ARHGEF17ENSG00000110237.3795.70390933.74390-0.230802.008701.52350HepG2SRSF9
ARHGEF17ENSG00000110237.32229.808501303.310900.7746023.8691022.69130HepG2SSB
ARHGEF17ENSG00000110237.31056.41500568.983900.892607.963906.91090HepG2SUPV3L1
ARHGEF17ENSG00000110237.31136.00120678.431900.743604.972704.04180HepG2TARDBP
ARHGEF17ENSG00000110237.31644.69980579.516501.5048047.8179046.21310HepG2TIAL1
ARHGEF17ENSG00000110237.3999.83250584.689700.7739015.3154014.13790HepG2TRIM56
ARHGEF17ENSG00000110237.31104.09270762.651800.533703.057302.13410HepG2TUFM
ARHGEF17ENSG00000110237.3589.70890976.13000-0.727108.380407.28620HepG2U2AF1
ARHGEF17ENSG00000110237.31331.248601067.964400.317803.994103.17870HepG2UPF1
ARHGEF17ENSG00000110237.31231.671701031.078200.256402.558801.97850HepG2UTP3
ARHGEF17ENSG00000110237.31041.10400560.104600.894208.838007.55810HepG2XRN2
ARHGEF17ENSG00000110237.31149.87050874.084700.395505.524604.62640HepG2ZC3H8
ARHGEF17ENSG00000110237.3957.084401174.55690-0.295403.660603.05540HepG2ZNF622
ARHGEF17ENSG00000110237.348.201405.143303.228207.430806.12600K562GPKOW
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARHGEF17 is not available on ENCORE database.





7 RBPs can affect the splicing of ARHGEF17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARHGEF17ENSG00000110237.3chr11+7306417273064403730638747306405773066577730666940.783000.000750.02126includedHepG2HNRNPK
RIARHGEF17ENSG00000110237.3chr11+7307626973076609730762697307633673076434730766090.404000.005780.04962includedHepG2TAF15
RIARHGEF17ENSG00000110237.3chr11+7307626973076609730762697307633673076434730766090.332000.005990.07509includedHepG2G3BP1
RIARHGEF17ENSG00000110237.3chr11+7307626973076609730762697307633673076434730766090.488000.000970.02343includedHepG2KHSRP
RIARHGEF17ENSG00000110237.3chr11+7307626973076609730762697307633673076434730766090.500000.001490.02797includedHepG2TIAL1
RIARHGEF17ENSG00000110237.3chr11+7307626973076609730762697307633673076434730766090.436000.002620.03035includedHepG2NCBP2
RIARHGEF17ENSG00000110237.3chr11+7307626973076609730762697307633673076434730766090.553000.000190.01550includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARHGEF17 is not avaliable on ENCORE database.