AGPAT6

General Information

Gene Name       : AGPAT6
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AGPAT6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AGPAT6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AGPAT6 RNA is bound by 25 proteins.  







eCLIP assay for AGPAT6 is not avaliable on ENCORE database.





25 proteins are bound to AGPAT6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr84145581341455885+3'-UTR,5'-UTR5.228136.64083K562FTO
chr84145581041455826+3'-UTR,5'-UTR,intron-Proximal4.775195.35746HepG2DDX3X
chr84146827141468370+3'-UTR,CDS,intron-Proximal3.118459.28389HepG2PRPF8
chr84145589441455954+3'-UTR,5'-UTR3.4760811.51353K562DDX3X
chr84146945541469512+3'-UTR,CDS,intron-Proximal3.567476.41974HepG2PPIG
chr84147982941479875+3'-UTR4.434184.07810K562UPF1
chr84147998441480033+3'-UTR4.273144.68055HepG2CSTF2T
chr84145653141456605+3'-UTR,5'-UTR,intron-Distal3.387076.67170K562ZNF622
chr84147921241479331+3'-UTR5.0731221.12867K562CPSF6
chr84145580941455894+3'-UTR,5'-UTR,intron-Proximal5.0532331.12798K562DDX3X
chr84146936541469431+3'-UTR,CDS,intron-Proximal5.443075.90023K562SF3B4
chr84145654841456617+3'-UTR,5'-UTR,intron-Distal3.402094.69669K562FTO
chr84146970541469773+3'-UTR,CDS3.928553.14999HepG2GRWD1
chr84146944841469511+3'-UTR,CDS3.928553.14999HepG2GRWD1
chr84145641641456516+3'-UTR,5'-UTR,intron-Distal3.617867.02805K562YBX3
chr84146969741469791+3'-UTR,CDS,intron-Proximal4.085898.12130HepG2PPIG
chr84147853641478659+3'-UTR4.565005.67997HepG2UPF1
chr84145594941456046+3'-UTR,5'-UTR,intron-Proximal5.2285316.03443HepG2DDX3X
chr84145674741456794+3'-UTR,CDS,intron-Proximal3.291413.68829K562YBX3
chr84146824241468309+3'-UTR,CDS,intron-Proximal3.105573.66791K562U2AF1
chr84146941441469510+3'-UTR,CDS,intron-Proximal4.3248017.20091K562DDX24
chr84147906941479281+3'-UTR3.089534.95657HepG2LSM11
chr84147918341479317+3'-UTR4.040146.88279HepG2LIN28B
chr84147850541478565+3'-UTR,CDS4.321403.71613K562UCHL5
chr84145652641456594+3'-UTR,5'-UTR,intron-Distal5.136117.58445K562RBM15
chr84147979241479882+3'-UTR4.637384.24431HepG2RBFOX2
chr84147907341479133+3'-UTR3.471834.22563K562UCHL5
chr84146824441468326+3'-UTR,CDS,intron-Proximal3.086366.61048K562U2AF2
chr84147909641479205+3'-UTR3.381706.01266K562LIN28B
chr84147889341478973+3'-UTR4.136013.92497HepG2UPF1
chr84147920541479323+3'-UTR4.452664.78556K562LIN28B
chr84147881541478862+3'-UTR3.545374.14074K562UPF1
chr84145581041455902+3'-UTR,5'-UTR,intron-Proximal3.168424.23993HepG2NCBP2
chr84143571841435807+5'-UTR,intron-Distal,intron-Proximal5.215669.67018K562DDX3X
chr84143571841435804+5'-UTR,intron-Distal,intron-Proximal5.6274611.78230HepG2DDX3X
chr84146731941467386+CDS4.308413.79199HepG2PPIG
chr84147836141478488+CDS,intron-Proximal3.380806.38636K562BUD13
chr84146747341467516+CDS,intron-Proximal3.537766.13643K562AQR
chr84147841041478472+CDS,intron-Proximal3.696135.91739K562UCHL5
chr84145669241456747+CDS,intron-Proximal3.551546.40723K562YBX3
chr84147641141476457+CDS,intron-Proximal3.962483.44423K562BUD13
chr84147647241476535+CDS,intron-Proximal3.190867.06369K562EFTUD2
chr84146694641467004+CDS4.147916.40330K562UCHL5
chr84146717641467266+CDS3.472859.05903K562UCHL5
chr84147636441476437+CDS,intron-Proximal4.937684.40745K562SF3B4
chr84147632441476414+CDS,intron-Proximal4.157714.07325HepG2SF3B4
chr84147637841476424+CDS,intron-Proximal5.356064.83371K562EFTUD2
chr84146745341467519+CDS,intron-Proximal3.095905.95433K562RBM15
chr84147836441478468+CDS,intron-Proximal3.469436.71722K562SF3B4
chr84147036341470458+CDS,intron-Proximal4.759996.85891K562DDX24
chr84147649141476519+CDS,intron-Proximal3.085044.38107K562AQR
chr84147576141475898+intron-Distal3.390083.94496K562RBFOX2
chr84144604341446108+intron-Distal5.089243.91475K562PTBP1
chr84143610141436192+intron-Distal,intron-Proximal3.810286.08669HepG2RBFOX2
chr84144603741446094+intron-Distal5.4472611.24529HepG2PTBP1
chr84146816341468209+intron-Proximal3.901373.06853K562LIN28B
chr84147651941476539+intron-Proximal3.743364.00320K562AQR
chr84146818441468233+intron-Proximal5.948905.12752HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AGPAT6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AGPAT6 is not available on ENCORE database.

  • 69 RBPs can affect the levels of AGPAT6.  








The Knockdown/knockout RNA-Seq assay for AGPAT6 is not available on ENCORE database.





69 RBPs can affect the gene expression of AGPAT6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AGPAT6ENSG00000158669.72109.592601269.936900.7321022.3054020.95290HepG2ACO1
AGPAT6ENSG00000158669.71923.445901331.587300.530404.266703.62610HepG2AKAP1
AGPAT6ENSG00000158669.71956.337001392.489200.490404.080202.82180HepG2AKAP8
AGPAT6ENSG00000158669.71594.873101275.952500.321804.063803.14800HepG2AKAP8L
AGPAT6ENSG00000158669.71424.838301101.745500.370902.592501.83130HepG2ASCC1
AGPAT6ENSG00000158669.72542.937601836.169900.469709.356108.21670HepG2AUH
AGPAT6ENSG00000158669.71662.819501115.898200.575306.792505.90260HepG2BOP1
AGPAT6ENSG00000158669.72144.457501502.853800.512807.470606.50980HepG2CELF1
AGPAT6ENSG00000158669.71739.962701275.492900.447903.590902.88910HepG2DDX3X
AGPAT6ENSG00000158669.71648.345201142.701700.528503.997503.08540HepG2DDX55
AGPAT6ENSG00000158669.71961.500401095.832500.839809.827608.74060HepG2DDX6
AGPAT6ENSG00000158669.71066.04060823.683500.372002.385701.54130HepG2EIF3D
AGPAT6ENSG00000158669.71563.730101163.937700.425902.910202.25470HepG2EIF4A3
AGPAT6ENSG00000158669.71860.440601133.401300.714905.957804.97590HepG2EIF4B
AGPAT6ENSG00000158669.72796.618702108.128600.407607.630606.71550HepG2ETF1
AGPAT6ENSG00000158669.72463.906401370.482200.8462010.889509.50550HepG2FIP1L1
AGPAT6ENSG00000158669.71638.711701138.209500.525703.395602.15730HepG2FUS
AGPAT6ENSG00000158669.71721.394701174.593600.551305.359104.41670HepG2FXR1
AGPAT6ENSG00000158669.71422.938001080.420800.397202.635501.64190HepG2GNB2L1
AGPAT6ENSG00000158669.71508.809201960.08600-0.377505.552604.57900HepG2HNRNPF
AGPAT6ENSG00000158669.71639.425001103.486000.571006.236405.21710HepG2HNRNPK
AGPAT6ENSG00000158669.71482.336301930.13620-0.380804.042103.18110HepG2IGF2BP1
AGPAT6ENSG00000158669.71387.983101107.397100.325702.128501.52690HepG2IGF2BP2
AGPAT6ENSG00000158669.72761.026101778.571100.634405.741904.53650HepG2LARP4
AGPAT6ENSG00000158669.71938.854701181.543800.714407.522506.52080HepG2MATR3
AGPAT6ENSG00000158669.71929.574001602.014300.268302.876402.09850HepG2NOL12
AGPAT6ENSG00000158669.7787.86160982.66140-0.318801.935901.30460HepG2NSUN2
AGPAT6ENSG00000158669.71474.645201187.660500.312103.699902.73580HepG2PARN
AGPAT6ENSG00000158669.71485.804601178.661900.334004.464103.72410HepG2PCBP1
AGPAT6ENSG00000158669.7527.35950681.18250-0.369302.812701.57290HepG2PKM
AGPAT6ENSG00000158669.7806.554501038.30310-0.364402.804102.02630HepG2PRPF4
AGPAT6ENSG00000158669.71423.061101199.413600.246602.429301.91090HepG2PTBP1
AGPAT6ENSG00000158669.72192.599301623.607800.433305.268304.50370HepG2PUM1
AGPAT6ENSG00000158669.72405.461501622.347600.568107.809406.70790HepG2PUM2
AGPAT6ENSG00000158669.71069.087401293.52180-0.274903.093902.45040HepG2PUS1
AGPAT6ENSG00000158669.71001.805301298.82180-0.374603.663702.96020HepG2QKI
AGPAT6ENSG00000158669.72208.594901039.672501.086909.476608.22540HepG2RAVER1
AGPAT6ENSG00000158669.71904.107301570.491100.277802.594101.76210HepG2RBM15
AGPAT6ENSG00000158669.73234.250001762.013800.8761027.9735026.66900HepG2RBM22
AGPAT6ENSG00000158669.71624.817701334.764800.283603.379102.79350HepG2NELFE
AGPAT6ENSG00000158669.72644.346202111.327700.324702.997002.28930HepG2RPLP0
AGPAT6ENSG00000158669.71041.00730801.573600.377002.981902.34770HepG2RPS19
AGPAT6ENSG00000158669.71154.062301680.06300-0.541803.804502.86570HepG2RPS3A
AGPAT6ENSG00000158669.71491.41920871.849900.774407.980506.73070HepG2RRP9
AGPAT6ENSG00000158669.7852.931401068.53650-0.325103.711202.98410HepG2SAFB2
AGPAT6ENSG00000158669.71037.32880804.356400.366902.375001.50070HepG2SERBP1
AGPAT6ENSG00000158669.71154.561601466.66770-0.345202.345401.69110HepG2SLBP
AGPAT6ENSG00000158669.71656.759501246.086600.410907.873506.87610HepG2SMN1
AGPAT6ENSG00000158669.71396.766601060.568500.397202.201901.35750HepG2SMNDC1
AGPAT6ENSG00000158669.72928.459301990.144500.5572015.6364014.70000HepG2SRFBP1
AGPAT6ENSG00000158669.71820.079401303.326400.481709.174308.42540HepG2SRSF1
AGPAT6ENSG00000158669.71631.787301180.308800.467203.153602.07530HepG2SRSF3
AGPAT6ENSG00000158669.72148.955501510.168200.508804.772103.98720HepG2SRSF5
AGPAT6ENSG00000158669.71501.316501060.376500.501609.605708.68520HepG2SRSF9
AGPAT6ENSG00000158669.71491.217901727.94250-0.212602.203401.73300HepG2SSB
AGPAT6ENSG00000158669.72461.812501717.354700.519409.900108.84550HepG2SUCLG1
AGPAT6ENSG00000158669.71616.913201172.377200.463704.233403.46500HepG2U2AF1
AGPAT6ENSG00000158669.71988.101701581.842300.329702.392101.61750HepG2UBE2L3
AGPAT6ENSG00000158669.71023.80590671.934100.607505.481204.40680HepG2UCHL5
AGPAT6ENSG00000158669.71419.307201156.113000.295803.641502.85630HepG2UPF1
AGPAT6ENSG00000158669.71535.081501116.180400.459607.738306.81790HepG2UTP3
AGPAT6ENSG00000158669.71188.314901024.659500.213702.066101.47270HepG2ZC3H8
AGPAT6ENSG00000158669.71834.478001271.501800.5287013.2067012.23620HepG2ZNF622
AGPAT6ENSG00000158669.73029.817902150.217200.4946011.9572010.86950K562AGGF1
AGPAT6ENSG00000158669.72847.056102362.856000.268802.350301.45650K562AKAP8
AGPAT6ENSG00000158669.73108.695602237.421200.474406.084805.09050K562AKAP8L
AGPAT6ENSG00000158669.73917.838503383.790300.211302.326701.46050K562EIF4G2
AGPAT6ENSG00000158669.73385.641502374.383400.511807.715706.16800K562KIF1C
AGPAT6ENSG00000158669.73180.290402659.920300.257702.568301.69790K562MBNL1
AGPAT6ENSG00000158669.72581.612501864.418500.469403.450902.44330K562NAA15
AGPAT6ENSG00000158669.73325.739902218.745500.583807.735706.87460K562PUS1
AGPAT6ENSG00000158669.72992.932802161.967800.469108.417307.40890K562RBM15
AGPAT6ENSG00000158669.71187.915701626.80620-0.453603.796002.60050K562RPS3
AGPAT6ENSG00000158669.71998.262701601.491200.319203.097702.35280K562SRSF1
AGPAT6ENSG00000158669.72444.564401830.730000.417103.072001.79850K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AGPAT6 is not available on ENCORE database.





8 RBPs can affect the splicing of AGPAT6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAGPAT6ENSG00000158669.7chr8+4147673941476870414764164147649641478411414789130.112000.000000.00000includedK562AQR
SEAGPAT6ENSG00000158669.7chr8+414682544146832941467173414674744146942141469511-0.096000.000000.00014excludedK562PUS1
SEAGPAT6ENSG00000158669.7chr8+4147673941476870414764164147649641478411414789130.052000.000880.02768includedHepG2SF3A3
SEAGPAT6ENSG00000158669.7chr8+414682544146832941467173414674744146942141469511-0.089000.000030.00490excludedK562HNRNPUL1
SEAGPAT6ENSG00000158669.7chr8+4145426641454397414357334143579741455810414567450.073000.001110.03693includedK562UTP18
SEAGPAT6ENSG00000158669.7chr8+414682544146832941467173414674744146942141469511-0.054000.001040.02825excludedK562RBM15
SEAGPAT6ENSG00000158669.7chr8+414682544146832941467173414674744146942141469511-0.065000.000250.00934excludedK562AGGF1
SEAGPAT6ENSG00000158669.7chr8+4144229141442436414357064143579741455810414564440.101000.000550.06628includedHepG2KHSRP
A3SSAGPAT6ENSG00000158669.7chr8+4146939941469511414694214146951141468254414683290.059000.000110.00094longerK562AQR
A3SSAGPAT6ENSG00000158669.7chr8+4147618541476331414762024147633141472417414725670.059000.000030.00028longerK562AQR
A3SSAGPAT6ENSG00000158669.7chr8+4146709641467328414671734146732841466934414670040.055000.000010.00013longerK562AQR
RIAGPAT6ENSG00000158669.7chr8+414558104145682341455810414559954145675241456823-0.054000.006790.06217excludedK562RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AGPAT6 is not avaliable on ENCORE database.