ACSF3

General Information

Gene Name       : ACSF3
Gene ID             : ENSG00000176715.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ACSF3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ACSF3ENSG00000176715.1610.6910.5910.64ENCSR000AEF
HepG2ACSF3ENSG00000176715.1620.4013.0116.70ENCSR985KAT
K562ACSF3ENSG00000176715.1615.189.9012.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ACSF3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ACSF3 RNA is bound by 33 proteins.  







eCLIP assay for ACSF3 is not avaliable on ENCORE database.





33 proteins are bound to ACSF3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr168922043889220502+3'-UTR,CDS,intron-Proximal4.414713.98315HepG2SF3B4
chr168916498789165069+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.909003.15048K562NOLC1
chr168922042289220506+3'-UTR,CDS,intron-Proximal5.738167.94676HepG2SF3A3
chr168921234989212487+3'-UTR,CDS,intron-Proximal5.229435.86613HepG2PPIG
chr168916909489169167+3'-UTR,5'-UTR,CDS4.545373.79199HepG2PPIG
chr168921173389211809+3'-UTR,CDS3.416098.06746HepG2PPIG
chr168922078089220961+3'-UTR4.960247.94456HepG2UPF1
chr168921234389212430+3'-UTR,CDS,intron-Proximal3.130083.80299HepG2GRWD1
chr168916039389160453+5'-UTR,intron-Distal,intron-Proximal4.229053.93614HepG2AQR
chr168916037789160473+5'-UTR,intron-Distal,intron-Proximal3.450554.46036HepG2PRPF8
chr168916749889167506+CDS,intron-Distal3.309784.30677K562YBX3
chr168916750189167559+CDS,intron-Distal3.632733.85266K562NOLC1
chr168921749489217550+CDS,intron-Distal4.066173.42967K562SLTM
chr168918074489180854+CDS,intron-Distal,intron-Proximal3.568107.64107HepG2PPIG
chr168916768089167740+CDS,intron-Distal3.528054.48863K562NOLC1
chr168917853889178668+CDS,intron-Proximal3.324265.60389HepG2PPIG
chr168921741989217520+CDS,intron-Distal,intron-Proximal3.102423.67498K562SAFB2
chr168918716189187238+CDS,intron-Proximal5.162135.90023K562SF3B4
chr168918087889180946+CDS,intron-Distal,intron-Proximal3.537626.18341HepG2PRPF8
chr168916709589167171+CDS,intron-Distal3.485233.64266HepG2PPIG
chr168916769089167756+CDS,intron-Distal,intron-Proximal3.542166.70085HepG2PPIG
chr168916767389167748+CDS,intron-Distal3.569293.44826K562METAP2
chr168916710189167149+CDS,intron-Distal4.280933.82297K562NOLC1
chr168918718189187370+CDS,intron-Proximal3.717307.62584HepG2BUD13
chr168921341289213464+intron-Distal3.925683.39593HepG2PRPF4
chr168918430189184394+intron-Distal6.2116714.67277K562SLTM
chr168918118589181255+intron-Distal3.734285.29525HepG2RBFOX2
chr168918432089184351+intron-Distal5.491306.38758HepG2SLTM
chr168917893189178995+intron-Distal4.079753.78432HepG2MATR3
chr168917957989179626+intron-Distal3.809273.00828K562YWHAG
chr168921657489216622+intron-Distal3.752904.78817K562SLTM
chr168918567789185714+intron-Distal4.426503.55849K562YWHAG
chr168918190089181964+intron-Distal3.582394.49353K562SLTM
chr168918689689186957+intron-Distal5.018179.60820HepG2SLTM
chr168918440889184501+intron-Distal4.6998521.16012K562SLTM
chr168921254989212612+intron-Distal,intron-Proximal3.469214.35063HepG2PRPF4
chr168920960489209673+intron-Distal3.589724.25264K562NONO
chr168921396089213985+intron-Distal5.041309.34107HepG2PRPF4
chr168920898589209058+intron-Distal4.5734715.41522K562AGGF1
chr168920911189209206+intron-Distal4.526564.94713K562HNRNPL
chr168921394789214039+intron-Distal3.630244.55496K562SAFB2
chr168920902589209090+intron-Distal4.728206.35227HepG2HNRNPL
chr168918585489185912+intron-Distal4.490553.83566K562YWHAG
chr168921254289212592+intron-Distal,intron-Proximal3.291563.00221HepG2CSTF2T
chr168918659689186639+intron-Distal4.290853.55849K562YWHAG
chr168921394789214036+intron-Distal4.952335.54349HepG2GTF2F1
chr168921643389216524+intron-Distal3.062063.36537K562SLTM
chr168917958289179615+intron-Distal4.343323.42734K562PTBP1
chr168916477989164855+intron-Distal4.158393.36882K562SLTM
chr168917913289179178+intron-Distal4.899079.53330K562PTBP1
chr168921943189219496+intron-Distal4.740145.72435K562SLTM
chr168918520689185290+intron-Distal4.4440711.07847K562SLTM
chr168916278289162846+intron-Distal3.273693.12654K562SLTM
chr168921315889213272+intron-Distal3.290184.85044HepG2GTF2F1
chr168920803789208093+intron-Distal4.030803.40087HepG2RBFOX2
chr168921314189213205+intron-Distal3.857938.53937HepG2PCBP2
chr168918690289186943+intron-Distal4.315313.28264K562YWHAG
chr168916211389162238+intron-Distal3.962857.88662HepG2HNRNPM
chr168918111089181168+intron-Distal4.947665.72435K562SLTM
chr168918546389185562+intron-Distal5.8647827.00049K562SLTM
chr168918313289183239+intron-Distal4.973728.46394HepG2SLTM
chr168921394889214023+intron-Distal4.828179.58395K562FAM120A
chr168918690489186958+intron-Distal4.4273311.46614K562SLTM
chr168921246589212597+intron-Distal,intron-Proximal3.115734.35275HepG2HLTF
chr168918320989183279+intron-Distal5.5777010.97996K562SLTM
chr168918583689185915+intron-Distal6.5733121.28944K562SLTM
chr168921394789214027+intron-Distal3.706424.25110K562CSTF2T
chr168920896589209025+intron-Distal3.211243.38596HepG2HNRNPL
chr168916351689163669+intron-Distal4.511867.32988HepG2HNRNPM
chr168918546589185552+intron-Distal5.6087616.60469HepG2SLTM
chr168917892889179012+intron-Distal3.921388.96960K562PTBP1
chr168920858689208637+intron-Distal3.217133.46580HepG2CSTF2T
chr168918387789183927+intron-Distal4.6213910.38212K562SLTM
chr168921394689213992+intron-Distal6.1589130.59067HepG2FAM120A
chr168918463389184666+intron-Distal3.901105.37287K562SLTM
chr168921647989216511+intron-Distal4.193793.26547HepG2HLTF
chr168917908989179160+intron-Distal4.346064.47026K562MATR3
chr168921399189214033+intron-Distal5.395097.63549K562GTF2F1
chr168917905889179191+intron-Distal6.9368833.35486HepG2PTBP1
chr168920922489209281+intron-Distal4.851415.84190HepG2HNRNPL
chr168921398989214031+intron-Distal3.033845.01551HepG2CSTF2T
chr168920998789210128+intron-Distal3.685064.35339HepG2CSTF2T
chr168921394689213958+intron-Distal4.680376.83853HepG2PRPF4
chr168918445389184498+intron-Distal4.113857.20578HepG2SLTM
chr168920961889209688+intron-Distal3.882703.18217HepG2NKRF
chr168917980289179885+intron-Distal4.159043.86024K562EWSR1
chr168920897789209084+intron-Distal3.002904.87195K562HNRNPL
chr168918584589185915+intron-Distal3.687733.19638K562SAFB2
chr168918276289182809+intron-Distal3.502754.70352K562SLTM
chr168917892589179039+intron-Distal5.3636618.40038HepG2PTBP1
chr168919091789191077+intron-Distal4.239634.76405HepG2ILF3
chr168918264489182692+intron-Distal3.277113.11000HepG2HNRNPM
chr168916354689163625+intron-Distal4.538894.23759K562NONO
chr168920769089207752+intron-Distal,intron-Proximal4.371793.87340HepG2CSTF2T
chr168918419189184233+intron-Distal5.376659.20003K562SLTM
chr168916478289164853+intron-Distal4.407794.16830K562EWSR1
chr168917905689179132+intron-Distal4.2733013.48919K562PTBP1
chr168916399489164053+intron-Distal3.986853.16310HepG2CSTF2T
chr168921394889213991+intron-Distal5.518456.14086K562GTF2F1
chr168918212689182181+intron-Distal5.106378.60156HepG2HNRNPM
chr168916353489163584+intron-Distal3.972433.30336K562EWSR1
chr168917894689179089+intron-Distal3.660027.02273K562MATR3
chr168921399289214029+intron-Distal4.7027515.60745HepG2FAM120A
chr168918502389185096+intron-Distal3.8801910.29897K562SLTM
chr168921141489211472+intron-Distal3.937413.40229HepG2CSTF2T
chr168921294689213008+intron-Distal3.966613.57018HepG2HNRNPK
chr168920938489209448+intron-Distal3.696954.69053HepG2SFPQ
chr168918179489181826+intron-Distal3.905593.34256K562YWHAG
chr168918292689182979+intron-Distal4.449323.83566K562YWHAG
chr168918286489182953+intron-Distal3.941917.64085K562SLTM
chr168918487389184904+intron-Distal4.064815.33662K562SLTM
chr168917958289179634+intron-Distal3.135943.80158K562NONO
chr168918519789185320+intron-Distal4.1421413.34351HepG2SLTM
chr168921607989216194+intron-Distal3.651445.52022HepG2FAM120A
chr168921394789213989+intron-Distal4.079316.48652HepG2CSTF2T
chr168920792089208025+intron-Distal4.072794.60713HepG2XPO5
chr168918314589183209+intron-Distal5.390728.53822K562SLTM
chr168918583689185916+intron-Distal6.4186317.70613HepG2SLTM
chr168918502089185054+intron-Distal3.859043.28264K562YWHAG
chr168921248089212541+intron-Proximal4.256614.57620HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ACSF3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ACSF3 is not available on ENCORE database.

  • 71 RBPs can affect the levels of ACSF3.  








The Knockdown/knockout RNA-Seq assay for ACSF3 is not available on ENCORE database.





71 RBPs can affect the gene expression of ACSF3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ACSF3ENSG00000176715.11890.98190676.607700.397002.117501.64550HepG2AKAP1
ACSF3ENSG00000176715.11757.91960510.633800.569704.933504.16420HepG2BOP1
ACSF3ENSG00000176715.11725.06910396.177000.871905.802804.69700HepG2CNOT7
ACSF3ENSG00000176715.11513.51490358.774700.517204.288703.02410HepG2YBX3
ACSF3ENSG00000176715.11858.02110630.573800.444204.910004.09790HepG2CELF1
ACSF3ENSG00000176715.11475.68890349.187300.445903.700602.96580HepG2DNAJC2
ACSF3ENSG00000176715.11822.85970535.161000.620604.992204.20880HepG2EIF2S1
ACSF3ENSG00000176715.11800.01610575.909200.474102.412801.76920HepG2EIF4B
ACSF3ENSG00000176715.111174.22340971.645500.273102.181701.63620HepG2ETF1
ACSF3ENSG00000176715.11741.83270553.564300.422202.469201.83880HepG2G3BP1
ACSF3ENSG00000176715.11295.60900395.60020-0.420402.019301.41640HepG2HNRNPC
ACSF3ENSG00000176715.11931.70050560.863500.732107.657406.53940HepG2HNRNPK
ACSF3ENSG00000176715.11362.89170480.43870-0.404802.554601.64010HepG2HNRNPM
ACSF3ENSG00000176715.11509.00080401.418700.342502.548601.84240HepG2ILF2
ACSF3ENSG00000176715.11809.54830600.400500.431102.464701.86610HepG2MATR3
ACSF3ENSG00000176715.11448.92990350.508800.356902.262701.58950HepG2PPIL4
ACSF3ENSG00000176715.11851.15220681.274500.321103.510102.85770HepG2PUM1
ACSF3ENSG00000176715.11973.83970812.113200.261902.058701.59410HepG2RBM22
ACSF3ENSG00000176715.11546.97940398.026100.458502.199601.48590HepG2RPS3A
ACSF3ENSG00000176715.11524.46610349.964500.583506.069705.17170HepG2SAFB2
ACSF3ENSG00000176715.11781.18950586.600100.413204.106803.40980HepG2SF3B4
ACSF3ENSG00000176715.11752.66760615.383100.290402.659601.96890HepG2SLBP
ACSF3ENSG00000176715.11763.49090558.530800.450902.081101.40740HepG2SNRNP70
ACSF3ENSG00000176715.111215.97210917.247400.406605.531204.89000HepG2SRFBP1
ACSF3ENSG00000176715.11676.95280796.37990-0.234401.762901.33050HepG2SSB
ACSF3ENSG00000176715.11889.86530720.635400.304203.141902.48760HepG2SUCLG1
ACSF3ENSG00000176715.11534.00120381.824700.483803.699203.13840HepG2TIAL1
ACSF3ENSG00000176715.11519.62670385.273100.431503.554802.93310HepG2TRIM56
ACSF3ENSG00000176715.11881.80530595.688500.565804.517003.72380HepG2U2AF1
ACSF3ENSG00000176715.11512.29890259.159400.983008.634607.29120HepG2UCHL5
ACSF3ENSG00000176715.11504.47350628.60600-0.317402.339901.77890HepG2UTP3
ACSF3ENSG00000176715.11350.45130714.61440-1.0280013.2699012.12680K562AGGF1
ACSF3ENSG00000176715.11567.20080785.16090-0.469104.064402.82310K562AKAP8
ACSF3ENSG00000176715.11398.37270743.56590-0.9003011.355509.90580K562AKAP8L
ACSF3ENSG00000176715.11470.59370780.13680-0.729207.199505.63230K562ATP5C1
ACSF3ENSG00000176715.11579.21470375.445800.625404.605603.46880K562BOP1
ACSF3ENSG00000176715.111049.75020709.974400.564102.894901.80260K562CNOT7
ACSF3ENSG00000176715.111626.432201183.019300.459105.246903.89790K562CELF1
ACSF3ENSG00000176715.11612.67020838.43650-0.452603.765402.05010K562DDX19B
ACSF3ENSG00000176715.111064.67150791.086000.428405.270104.41100K562DDX47
ACSF3ENSG00000176715.11450.40010326.812700.462602.616801.32890K562DHX30
ACSF3ENSG00000176715.11535.52110800.27270-0.579505.820904.48890K562DKC1
ACSF3ENSG00000176715.11501.40080362.642300.467303.754602.32410K562EIF2S1
ACSF3ENSG00000176715.11484.58980296.941500.706503.406102.28080K562EIF3A
ACSF3ENSG00000176715.11427.09360288.079700.568004.192003.22080K562EIF3G
ACSF3ENSG00000176715.111302.57340962.012400.437105.414904.11930K562EIF4G2
ACSF3ENSG00000176715.11497.37290344.341200.530403.262102.26190K562FTO
ACSF3ENSG00000176715.11497.46670358.747700.471503.460902.79530K562FXR1
ACSF3ENSG00000176715.11781.73270610.580700.356403.030301.83610K562GLRX3
ACSF3ENSG00000176715.11539.25020381.074500.500803.380902.50600K562GPKOW
ACSF3ENSG00000176715.11306.37870511.79860-0.740303.021001.73050K562HNRNPA2B1
ACSF3ENSG00000176715.11230.86290435.48490-0.915606.919805.34680K562HNRNPM
ACSF3ENSG00000176715.11501.59870304.997300.717605.509803.40460K562ILF3
ACSF3ENSG00000176715.11474.89480789.18890-0.732805.988304.66990K562KIF1C
ACSF3ENSG00000176715.11450.59550755.38340-0.745403.735602.42020K562MAK16
ACSF3ENSG00000176715.11497.26450342.912400.536104.157103.00710K562MATR3
ACSF3ENSG00000176715.11500.15220884.07980-0.821804.749403.49380K562MBNL1
ACSF3ENSG00000176715.11507.34620371.984700.447602.836201.94700K562METAP2
ACSF3ENSG00000176715.11334.84290619.66890-0.888004.316903.14100K562NAA15
ACSF3ENSG00000176715.11939.56510713.225800.397505.217504.23850K562NSUN2
ACSF3ENSG00000176715.111177.07900766.084900.619505.751304.54660K562PCBP3
ACSF3ENSG00000176715.11929.34840587.625700.661208.141706.79120K562POLR2G
ACSF3ENSG00000176715.11309.40780426.91210-0.464402.510501.79570K562PRPF8
ACSF3ENSG00000176715.11436.71260333.836700.387402.350401.73090K562PTBP1
ACSF3ENSG00000176715.11309.91370737.57590-1.2509014.7831013.56770K562PUS1
ACSF3ENSG00000176715.11328.01980718.52190-1.1312012.4412011.18710K562RBM15
ACSF3ENSG00000176715.11555.45380320.113100.795006.879405.48380K562RBM22
ACSF3ENSG00000176715.11468.88300336.867000.476902.896601.77460K562NELFE
ACSF3ENSG00000176715.11496.48810331.918400.580803.327302.22030K562RPS3
ACSF3ENSG00000176715.11874.75500703.834500.313502.609201.81700K562SF3A3
ACSF3ENSG00000176715.11315.67150225.481300.485302.793501.93380K562SF3B4
ACSF3ENSG00000176715.11484.20220321.530600.590604.195702.61760K562SLBP
ACSF3ENSG00000176715.11231.82460470.20220-1.020204.696402.96360K562SNRNP200
ACSF3ENSG00000176715.11482.25990327.270500.559204.013203.16730K562SRSF1
ACSF3ENSG00000176715.11469.63540589.38670-0.327702.035301.33090K562SYNCRIP
ACSF3ENSG00000176715.11454.30580331.220700.455802.663101.96710K562TARDBP
ACSF3ENSG00000176715.11421.08660319.499300.398202.308701.56830K562TIA1
ACSF3ENSG00000176715.11903.93400756.251800.257302.258401.60490K562UPF1
ACSF3ENSG00000176715.11458.41210747.66070-0.705703.203501.77710K562UTP18
ACSF3ENSG00000176715.11933.18330672.941500.471603.555002.60320K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ACSF3 is not available on ENCORE database.





6 RBPs can affect the splicing of ACSF3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEACSF3ENSG00000176715.11chr16+891670698916775589160290891604048916901189169167-0.588000.001080.03344excludedK562AKAP8L
SEACSF3ENSG00000176715.11chr16+8918339789183494891807468918089589187208891873210.221000.003220.03720includedHepG2U2AF2
SEACSF3ENSG00000176715.11chr16+8918340089183494891807468918089589187208891873210.117000.006500.05767includedK562AQR
SEACSF3ENSG00000176715.11chr16+891670698916775589160262891604008916901189169167-0.188000.006400.07505excludedK562PUS1
SEACSF3ENSG00000176715.11chr16+891807468918089589178499891786548918720889187321-0.364000.000000.00002excludedK562HNRNPU
SEACSF3ENSG00000176715.11chr16+891807468918089589178499891786548918720889187321-0.444000.000250.01592excludedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ACSF3 is not avaliable on ENCORE database.