ZNF106

General Information

Gene Name       : ZNF106
Gene ID             : ENSG00000103994.17
Essential Gene : No

Functions

Localization(RBPImage: ZNF106)

Domains (AlphaFold: ZNF106)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF106ENSG00000103994.1724.7222.7023.71ENCSR000AEF
HepG2ZNF106ENSG00000103994.1714.9319.8417.38ENCSR985KAT
K562ZNF106ENSG00000103994.1725.8628.8827.37ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq ZNF106-BGKcLV08-K562ENCSR660WRQZNF106K562ReleasedENCSR015KGT   CRISPRKD% = 96.7,96.7
knockdown followed by RNA-seq ZNF106-BGHcLV10-HepG2ENCSR636DVAZNF106HepG2ReleasedENCSR775ZWO   CRISPRKD% = 96.7,96.6






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
ZNF106ENCAB444XHDA301-527A1Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNF106K562shRNABGKLV32-63,BGKLV32-64BGKLV32-1,BGKLV32-2NotSatisfiedENCODE3
ZNF106HepG2shRNABGHLV27-63,BGHLV27-64BGHLV27-1,BGHLV27-2NotSatisfiedENCODE3
ZNF106HepG2shRNABGHLV31-59,BGHLV31-60BGHLV31-1,BGHLV31-2NotSatisfiedENCODE3
ZNF106K562CRISPRBGKcLV06-45,BGKcLV06-46BGKcLV06-1,BGKcLV06-2NotSatisfiedENCODE4bad KD%
ZNF106K562CRISPRENCSR660WRQENCSR015KGTZFP106-BGKcLV08-87,ZFP106-BGKcLV08-88NT-BGKcLV08-1,NT-BGKcLV08-296.7,96.7ReleasedENCODE4
ZNF106K562CRISPRBGKcLV08-89,BGKcLV08-90BGKcLV08-1,BGKcLV08-2NotSatisfiedENCODE4
ZNF106HepG2CRISPRBGHcLV07-45,BGHcLV07-46BGHcLV07-1,BGHcLV07-2NotSatisfiedENCODE4bad KD%
ZNF106HepG2CRISPRBGHcLV09-33,BGHcLV09-34BGHcLV09-1,BGHcLV09-297.7,97.3NotSatisfiedENCODE4
ZNF106HepG2CRISPRENCSR636DVAENCSR775ZWOZFP106-BGHcLV10-55,ZFP106-BGHcLV10-56NT-BGHcLV10-1,NT-BGHcLV10-296.7,96.6ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    ZNF106: Click to RBP Image Database
  • Nuclei
  • Nucleolus
  • Cytoplasm
  • Cytosolic
  • Nuclear release mitosis












  • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    ZNF106Product_ID: A301-527A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: ZNF106-human
    K562_Bethyl_A301-527A_2_ZNF106.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using ZNF106 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-ZNF106 antibody (lanes under 'ZNF106').








    RNA Targets

    • eCLIP assay for ZNF106 is not avaliable on ENCORE database.



    Proteins bound to RNA

    • ZNF106 RNA is bound by 22 proteins.  







    eCLIP assay for ZNF106 is not avaliable on ENCORE database.





    22 proteins are bound to ZNF106 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr154274402442744129-3'-UTR,CDS,intron-Distal4.376014.45558HepG2GRWD1
    chr154270765142707681-3'-UTR,CDS,intron-Distal3.136674.61790K562UPF1
    chr154274406442744152-3'-UTR,CDS,intron-Distal4.416557.97334HepG2BCLAF1
    chr154270820842708298-3'-UTR,intron-Distal3.752897.91099K562UPF1
    chr154270623042706271-3'-UTR,intron-Distal4.942547.64008K562YBX3
    chr154270815142708183-3'-UTR,intron-Distal4.360404.46422K562UPF1
    chr154270548642705575-3'-UTR,intron-Distal3.283765.59934K562FAM120A
    chr154270527742705343-3'-UTR,intron-Distal4.553918.85840K562UPF1
    chr154270843342708472-3'-UTR,intron-Distal3.567923.07801K562UPF1
    chr154270520242705233-3'-UTR,intron-Distal3.239893.06830K562UPF1
    chr154270551842705557-3'-UTR,intron-Distal3.310636.06342K562UPF1
    chr154270785942707905-3'-UTR,intron-Distal,intron-Proximal4.643579.89033K562UPF1
    chr154274394442744050-3'-UTR,CDS,intron-Distal4.7777211.13876HepG2BCLAF1
    chr154270872342708765-3'-UTR,intron-Distal4.230804.32914K562YBX3
    chr154274390742743958-3'-UTR,CDS,intron-Distal3.975153.48187K562RBM15
    chr154270539642705448-3'-UTR,intron-Distal3.534783.80897HepG2FXR2
    chr154274389242743964-3'-UTR,CDS,intron-Distal4.040586.46803K562UCHL5
    chr154270525842705314-3'-UTR,intron-Distal3.551075.27637K562FAM120A
    chr154274380842743881-3'-UTR,CDS,intron-Distal,intron-Proximal3.248104.00731K562UCHL5
    chr154270818942708259-3'-UTR,intron-Distal3.028153.41666HepG2UPF1
    chr154270858842708631-3'-UTR,intron-Distal4.109695.15345K562UPF1
    chr154270707942707120-3'-UTR,intron-Distal3.254956.65594K562UPF1
    chr154274405342744137-3'-UTR,CDS,intron-Distal4.416748.58706K562UCHL5
    chr154278323542783317-5'-UTR,intron-Distal,intron-Proximal3.368393.52645HepG2NCBP2
    chr154274086642740906-5'-UTR,CDS,intron-Distal,intron-Proximal3.665303.28366HepG2BCLAF1
    chr154276443342764515-5'-UTR,CDS,intron-Distal,intron-Proximal4.808866.50203HepG2GRWD1
    chr154278316942783293-5'-UTR,intron-Distal3.586495.97131K562DDX3X
    chr154276446642764517-5'-UTR,CDS,intron-Distal3.628153.90826K562ZNF622
    chr154278318742783262-5'-UTR,intron-Distal3.441488.31998HepG2DDX3X
    chr154278326242783316-5'-UTR,intron-Distal,intron-Proximal4.775195.35746HepG2DDX3X
    chr154278318842783287-5'-UTR,intron-Distal5.158217.72091K562FMR1
    chr154272759242727627-CDS,intron-Distal4.130113.02457HepG2BCLAF1
    chr154270951242709594-CDS,intron-Distal3.265503.26275K562BUD13
    chr154273710542737135-CDS,intron-Distal4.422593.38968HepG2BCLAF1
    chr154273436942734564-CDS,intron-Distal3.187163.38325HepG2IGF2BP1
    chr154274930542749357-CDS,intron-Distal,intron-Proximal3.568028.64848K562UCHL5
    chr154272753942727625-CDS,intron-Distal,intron-Proximal3.995958.47339HepG2PRPF8
    chr154272950642729578-CDS,intron-Distal,intron-Proximal3.584684.52024HepG2PPIG
    chr154271456742714701-CDS,intron-Distal,intron-Proximal4.8121110.08262K562AQR
    chr154274289542742955-CDS,intron-Distal4.055973.97692K562IGF2BP1
    chr154274915242749212-CDS,intron-Distal,intron-Proximal4.042516.95786K562UCHL5
    chr154274055242740658-CDS,intron-Distal,intron-Proximal5.084546.71125HepG2FXR2
    chr154275825042758286-CDS,intron-Distal,intron-Proximal3.238725.40132HepG2BCLAF1
    chr154274932042749358-CDS,intron-Distal,intron-Proximal3.080343.71797HepG2BCLAF1
    chr154274044042740469-CDS,intron-Distal3.881553.01428K562UCHL5
    chr154274291042742961-CDS,intron-Distal3.720394.17155HepG2BCLAF1
    chr154273153642731611-CDS,intron-Distal3.517575.15776HepG2BCLAF1
    chr154274067142740795-CDS,intron-Distal4.432714.11693K562BUD13
    chr154272953842729575-CDS,intron-Distal4.265833.29312HepG2FXR2
    chr154273436642734428-CDS,intron-Distal4.207696.81811K562UCHL5
    chr154275824842758279-CDS,intron-Distal,intron-Proximal3.436847.28841K562ZNF622
    chr154275824842758313-CDS,intron-Distal,intron-Proximal3.867416.39499HepG2GRWD1
    chr154271620142716254-CDS,intron-Distal3.828136.64581K562YBX3
    chr154273442042734472-CDS,intron-Distal3.681454.49000K562FXR2
    chr154275825042758313-CDS,intron-Distal,intron-Proximal3.045043.96469K562UCHL5
    chr154273154442731656-CDS,intron-Distal3.518396.43326K562UCHL5
    chr154274915442749216-CDS,intron-Distal,intron-Proximal3.068365.44868K562ZNF622
    chr154274223942742290-CDS,intron-Distal3.255563.31745K562ZNF622
    chr154273135642731403-CDS,intron-Distal3.563633.88337HepG2FXR2
    chr154274068342740791-CDS,intron-Distal4.385565.85983HepG2GRWD1
    chr154273705642737099-CDS,intron-Distal3.432123.09866HepG2FXR2
    chr154274932142749357-CDS,intron-Distal,intron-Proximal4.168016.81238K562ZNF622
    chr154273128942731424-CDS,intron-Distal4.750865.41965HepG2G3BP1
    chr154274072642740793-CDS,intron-Distal3.698864.09885HepG2BCLAF1
    chr154274069542740811-CDS,intron-Distal3.634383.07416K562FXR1
    chr154273705442737166-CDS,intron-Distal5.559255.93845K562DDX24
    chr154271477042714819-CDS,intron-Distal,intron-Proximal4.023288.34773K562YBX3
    chr154273130242731343-CDS,intron-Distal4.530344.34038HepG2BCLAF1
    chr154273082042730865-CDS,intron-Distal3.533783.27569HepG2BCLAF1
    chr154274068042740763-CDS,intron-Distal4.316315.20626K562PUM2
    chr154273703342737088-CDS,intron-Distal3.645965.45876HepG2BCLAF1
    chr154273183542731955-CDS,intron-Distal,intron-Proximal3.491347.83567HepG2BCLAF1
    chr154271619542716201-CDS,intron-Distal,intron-Proximal3.740606.19204K562YBX3
    chr154271460742714674-intron-Distal,intron-Proximal4.114143.49003K562PRPF8
    chr154278059842780677-intron-Distal3.990433.22972K562TARDBP
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for ZNF106 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for ZNF106 is not available on ENCORE database.

    • 77 RBPs can affect the levels of ZNF106.  








    The Knockdown/knockout RNA-Seq assay for ZNF106 is not available on ENCORE database.





    77 RBPs can affect the gene expression of ZNF106 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    ZNF106ENSG00000103994.122827.087602169.656000.381802.654702.13340HepG2AKAP1
    ZNF106ENSG00000103994.12950.536201505.21640-0.663205.623604.26980HepG2BCCIP
    ZNF106ENSG00000103994.121275.696601820.05970-0.512705.743404.91970HepG2BOP1
    ZNF106ENSG00000103994.121542.841202281.97520-0.564704.465203.21120HepG2CCAR1
    ZNF106ENSG00000103994.121129.869901455.61360-0.365504.399203.11630HepG2YBX3
    ZNF106ENSG00000103994.121211.084501457.67550-0.267402.488401.39420HepG2DDX1
    ZNF106ENSG00000103994.12680.898001392.54550-1.0322018.8069017.23330HepG2DDX21
    ZNF106ENSG00000103994.121214.956802078.37870-0.774609.779308.66660HepG2DDX3X
    ZNF106ENSG00000103994.121057.670301479.90150-0.484603.241502.41360HepG2DDX55
    ZNF106ENSG00000103994.121371.529601785.34120-0.380402.473601.88740HepG2DDX6
    ZNF106ENSG00000103994.121145.131701429.34730-0.319803.472402.69100HepG2DNAJC21
    ZNF106ENSG00000103994.12968.090701416.66210-0.5493011.9515010.69920HepG2DNAJC2
    ZNF106ENSG00000103994.121340.937301032.770300.376602.840901.92730HepG2EIF3D
    ZNF106ENSG00000103994.122336.900501868.791500.322402.098501.42410HepG2FIP1L1
    ZNF106ENSG00000103994.121355.676601775.25870-0.389002.741802.07900HepG2G3BP1
    ZNF106ENSG00000103994.12606.77030919.55650-0.599805.673604.38750HepG2GEMIN5
    ZNF106ENSG00000103994.121122.411201488.03220-0.406802.900401.85650HepG2GNB2L1
    ZNF106ENSG00000103994.121487.530101894.04050-0.348502.346101.75320HepG2GPKOW
    ZNF106ENSG00000103994.12856.090101443.04010-0.7533010.830109.67900HepG2HNRNPA1
    ZNF106ENSG00000103994.121078.642201605.09420-0.573406.797305.74760HepG2HNRNPC
    ZNF106ENSG00000103994.121434.744801849.20220-0.366106.842905.82700HepG2HNRNPL
    ZNF106ENSG00000103994.121182.458901807.52230-0.612206.844705.90540HepG2HNRNPLL
    ZNF106ENSG00000103994.121183.584501594.48390-0.429907.069506.13590HepG2HNRNPU
    ZNF106ENSG00000103994.121100.589601628.71610-0.5655014.0730012.56060HepG2ILF2
    ZNF106ENSG00000103994.121464.319402409.11210-0.718306.976205.64670HepG2LARP4
    ZNF106ENSG00000103994.12602.719101512.69600-1.3276031.5375029.31170HepG2MSI2
    ZNF106ENSG00000103994.121406.757001970.44050-0.486104.139203.36930HepG2NCBP2
    ZNF106ENSG00000103994.121560.309802012.92450-0.367504.647903.65950HepG2NOL12
    ZNF106ENSG00000103994.121288.853801578.29240-0.292303.446102.51070HepG2PARN
    ZNF106ENSG00000103994.12989.547501422.15590-0.523207.975906.77440HepG2PPIL4
    ZNF106ENSG00000103994.121819.815401421.696100.356103.654602.77670HepG2PRPF4
    ZNF106ENSG00000103994.121537.367901813.24480-0.238102.417501.90010HepG2PTBP1
    ZNF106ENSG00000103994.121005.485801762.58490-0.8098024.2259022.73830HepG2PUS1
    ZNF106ENSG00000103994.121703.964802383.70630-0.484308.514307.72130HepG2RBM22
    ZNF106ENSG00000103994.121366.714101757.76750-0.363002.598901.63820HepG2RBM27
    ZNF106ENSG00000103994.121140.552401419.97080-0.316104.198203.43360HepG2SAFB2
    ZNF106ENSG00000103994.121232.156001655.94690-0.426508.624707.58860HepG2SMN1
    ZNF106ENSG00000103994.122302.184102692.30480-0.225803.060202.54190HepG2SRFBP1
    ZNF106ENSG00000103994.122854.727901970.429400.5347013.6705012.79110HepG2SRSF1
    ZNF106ENSG00000103994.121486.634901739.47080-0.226602.671201.98740HepG2SRSF7
    ZNF106ENSG00000103994.122749.320902337.551300.234003.197302.65540HepG2SSB
    ZNF106ENSG00000103994.121012.485401262.08490-0.317902.348401.47670HepG2SUPT6H
    ZNF106ENSG00000103994.121049.522101473.28070-0.489303.458502.71260HepG2SUPV3L1
    ZNF106ENSG00000103994.121264.897301761.90720-0.478104.850703.92780HepG2TARDBP
    ZNF106ENSG00000103994.12821.049901549.41820-0.9162019.7074018.59600HepG2TIAL1
    ZNF106ENSG00000103994.12932.368701563.18390-0.7455018.7273017.42840HepG2TRIM56
    ZNF106ENSG00000103994.122002.372701598.754000.324702.534701.93120HepG2U2AF1
    ZNF106ENSG00000103994.12597.20220870.35430-0.543404.164103.23250HepG2UCHL5
    ZNF106ENSG00000103994.12859.513801349.23620-0.650604.066502.83910HepG2UPF2
    ZNF106ENSG00000103994.121268.218801866.32950-0.5574012.0928010.97760HepG2UTP3
    ZNF106ENSG00000103994.12864.898701450.28140-0.745708.064006.83810HepG2XRN2
    ZNF106ENSG00000103994.12762.465401403.09760-0.8799014.3943013.05640HepG2ZC3H8
    ZNF106ENSG00000103994.121405.388602126.03700-0.5972017.9204016.83050HepG2ZNF622
    ZNF106ENSG00000103994.123317.885304545.50970-0.454205.677004.88840K562AQR
    ZNF106ENSG00000103994.123320.860603958.92770-0.253603.159502.17970K562ATP5C1
    ZNF106ENSG00000103994.123642.541704333.70690-0.250702.684501.53040K562CCDC124
    ZNF106ENSG00000103994.123598.945004474.26000-0.314104.893003.39300K562CPEB4
    ZNF106ENSG00000103994.121745.760302117.36020-0.278403.012601.90600K562CSTF2
    ZNF106ENSG00000103994.125764.608204630.020200.316105.879004.98000K562DDX47
    ZNF106ENSG00000103994.122661.037403536.11180-0.410207.357106.26640K562EIF2S2
    ZNF106ENSG00000103994.123489.236402885.476300.274002.365501.60490K562EIF4A3
    ZNF106ENSG00000103994.122249.274903490.89530-0.634109.661907.96830K562FIP1L1
    ZNF106ENSG00000103994.123502.090803000.779600.222802.685302.08800K562FXR1
    ZNF106ENSG00000103994.121873.210002686.48740-0.520205.118503.15850K562GEMIN5
    ZNF106ENSG00000103994.122261.227904712.39290-1.0594029.8714027.31060K562GRSF1
    ZNF106ENSG00000103994.122743.133502282.049100.265402.394401.83350K562HNRNPC
    ZNF106ENSG00000103994.122009.070502871.30690-0.515204.931703.65070K562HNRNPM
    ZNF106ENSG00000103994.123129.084804732.91910-0.597008.795107.39280K562HSPD1
    ZNF106ENSG00000103994.123539.196004486.02080-0.342004.231303.06700K562MBNL1
    ZNF106ENSG00000103994.122053.351802557.21750-0.316603.053302.13170K562METAP2
    ZNF106ENSG00000103994.122420.351703363.49340-0.4747011.6223010.09300K562MTPAP
    ZNF106ENSG00000103994.121772.240302246.94710-0.342402.704301.30840K562NUSAP1
    ZNF106ENSG00000103994.121687.560802228.01430-0.400803.424001.81320K562PHF6
    ZNF106ENSG00000103994.122413.454903962.85050-0.7154011.556209.54210K562PPIG
    ZNF106ENSG00000103994.121382.869902046.10540-0.565207.293005.69520K562PSIP1
    ZNF106ENSG00000103994.123066.681003598.53450-0.230702.053301.46530K562PTBP1
    ZNF106ENSG00000103994.125146.545206642.93320-0.368206.827905.29880K562PUM2
    ZNF106ENSG00000103994.122584.361603742.33320-0.534106.904806.09200K562PUS1
    ZNF106ENSG00000103994.121448.219801769.72020-0.289202.230801.33120K562SRFBP1
    ZNF106ENSG00000103994.122743.938803331.53440-0.279902.256301.32680K562SRSF5
    ZNF106ENSG00000103994.121548.790201968.00570-0.345602.487501.60540K562TIAL1
    ZNF106ENSG00000103994.121577.453102090.80180-0.406504.110902.91020K562TRIM56
    ZNF106ENSG00000103994.123767.790202818.356000.418806.146604.95560K562U2AF2
    ZNF106ENSG00000103994.122877.517003962.46200-0.4616012.0167010.65190K562UPF1
    ZNF106ENSG00000103994.122356.578203390.53910-0.524808.076006.53940K562WDR3
    ZNF106ENSG00000103994.122156.906902720.86490-0.335102.534101.39190K562XRN2
    ZNF106ENSG00000103994.123864.153605120.27530-0.406104.738303.56400K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for ZNF106 is not available on ENCORE database.





    5 RBPs can affect the splicing of ZNF106 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSZNF106ENSG00000103994.12chr15-4273123042732011427312304273175042734270427346120.242000.001060.08387longerHepG2RBM22
    A3SSZNF106ENSG00000103994.12chr15-4272021542720350427202154272033242727581427277450.101000.000080.00072longerK562AQR
    A3SSZNF106ENSG00000103994.12chr15-4273878642738874427387864273885642740269427409030.178000.000020.00021longerK562AQR
    A3SSZNF106ENSG00000103994.12chr15-427312304273201142731230427317504273427042734612-0.235000.002860.09394shorterHepG2U2AF1
    A3SSZNF106ENSG00000103994.12chr15-4273123042732011427312304273175042734270427346120.267000.000000.00000longerK562SRSF1
    MXEZNF106ENSG00000103994.12chr15-4274915542749356427582504275831242743175427441524276443342764519-0.260000.000940.082592includedHepG2PCBP2

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for ZNF106 is not avaliable on ENCORE database.