VPRBP

General Information

Gene Name       : VPRBP
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VPRBP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPRBP is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPRBP RNA is bound by 24 proteins.  







eCLIP assay for VPRBP is not avaliable on ENCORE database.





24 proteins are bound to VPRBP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr35143618551436239-3'-UTR,CDS,intron-Distal3.898113.31827HepG2GRWD1
chr35143573051435817-3'-UTR,intron-Distal4.892945.25389K562UPF1
chr35143533551435382-3'-UTR,intron-Distal4.871416.42091K562UPF1
chr35143576351435834-3'-UTR,intron-Distal6.2748921.55963K562CPEB4
chr35143532551435380-3'-UTR,intron-Distal4.182624.73315K562TIA1
chr35153388251533963-5'-UTR,intron-Distal4.163257.88406K562DDX24
chr35153388751533966-5'-UTR,intron-Distal4.517808.60314K562AATF
chr35153389151533949-5'-UTR,intron-Distal3.9940611.73359HepG2EFTUD2
chr35151781251517867-5'-UTR,CDS,intron-Distal,intron-Proximal4.669948.14995HepG2U2AF2
chr35151778751517856-5'-UTR,CDS,intron-Distal,intron-Proximal4.480337.53358HepG2BCLAF1
chr35153392351533986-5'-UTR,intron-Distal3.082214.13941K562IGF2BP1
chr35153388451533978-5'-UTR,intron-Distal3.316444.29438K562FXR2
chr35153392651533981-5'-UTR,intron-Distal5.2845627.31648K562EIF4G2
chr35153388451533988-5'-UTR,intron-Distal3.117147.87286K562ZNF622
chr35153388951533993-5'-UTR,intron-Distal4.4706516.26065K562TARDBP
chr35153388351533926-5'-UTR,intron-Distal4.6011021.06452K562EIF4G2
chr35153388451533991-5'-UTR,intron-Distal4.232649.61734HepG2NCBP2
chr35144983851449864-CDS,intron-Distal4.189883.01428K562UCHL5
chr35145142651451489-CDS,intron-Distal4.007524.04622HepG2GRWD1
chr35147780251477870-CDS,intron-Distal4.150823.79347HepG2GRWD1
chr35144065751440819-CDS,intron-Distal4.0687213.82685K562UCHL5
chr35147570551475753-CDS,intron-Distal,intron-Proximal3.978373.11168K562ZNF622
chr35145047351450509-CDS,intron-Distal4.291073.89826HepG2BCLAF1
chr35145780951457867-CDS,intron-Distal3.255843.56169K562RBM15
chr35144068751440792-CDS,intron-Distal3.745485.49349K562ZNF800
chr35147565851475714-CDS,intron-Distal,intron-Proximal3.872793.31827HepG2GRWD1
chr35144066251440731-CDS,intron-Distal4.076563.24150HepG2HLTF
chr35145225151452305-CDS,intron-Distal3.775903.02850K562YBX3
chr35144057151440695-CDS,intron-Distal,intron-Proximal3.654706.59709K562PUM1
chr35144063951440777-CDS,intron-Distal3.9155410.78406HepG2BCLAF1
chr35147779851477860-CDS,intron-Distal3.093115.07457HepG2BCLAF1
chr35145769151457779-CDS,intron-Distal3.589906.95705HepG2PCBP2
chr35144069551440789-CDS,intron-Distal4.857375.50941K562PUM1
chr35144068151440774-CDS,intron-Distal3.707426.44455K562ZNF622
chr35145786751457917-CDS,intron-Distal4.090623.81597K562RBM15
chr35144761051447675-intron-Distal3.878413.27946HepG2HNRNPM
chr35143774951437887-intron-Distal3.941186.66631HepG2HNRNPM
chr35153383451533876-intron-Distal5.626928.14804HepG2EFTUD2
chr35153377951533831-intron-Distal4.746656.80961HepG2EFTUD2
chr35153372551533817-intron-Distal4.956436.03756HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPRBP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPRBP is not available on ENCORE database.

  • 73 RBPs can affect the levels of VPRBP.  








The Knockdown/knockout RNA-Seq assay for VPRBP is not available on ENCORE database.





73 RBPs can affect the gene expression of VPRBP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPRBPENSG00000145041.111067.464201367.58940-0.357404.707103.85250HepG2AUH
VPRBPENSG00000145041.11878.982201167.40760-0.409404.012803.10770HepG2CALR
VPRBPENSG00000145041.11950.991601452.73260-0.611304.713303.42670HepG2CCAR1
VPRBPENSG00000145041.11870.542601110.16370-0.350802.452601.79960HepG2CPSF6
VPRBPENSG00000145041.11640.15570810.41930-0.340202.931401.88280HepG2YBX3
VPRBPENSG00000145041.11801.235501084.38350-0.436605.132304.30480HepG2CELF1
VPRBPENSG00000145041.11644.92360791.94090-0.296302.812701.97180HepG2DDX19B
VPRBPENSG00000145041.11653.10080811.53070-0.313302.407601.32940HepG2DDX1
VPRBPENSG00000145041.11538.62790890.91680-0.726006.694505.76350HepG2DDX3X
VPRBPENSG00000145041.11537.20400754.02630-0.489102.511001.76970HepG2DDX55
VPRBPENSG00000145041.11632.51960819.23720-0.373203.552702.80080HepG2DKC1
VPRBPENSG00000145041.11621.99420795.74360-0.355403.056802.32210HepG2DNAJC21
VPRBPENSG00000145041.11560.49860788.75680-0.492906.582205.63590HepG2DNAJC2
VPRBPENSG00000145041.11567.39740803.30780-0.501603.514002.48080HepG2EEF2
VPRBPENSG00000145041.11814.822901101.90820-0.435403.429402.52910HepG2EIF4G2
VPRBPENSG00000145041.11452.55620582.80150-0.364902.428401.33550HepG2FAM120A
VPRBPENSG00000145041.11751.78230576.832500.382102.576901.81660HepG2FUBP3
VPRBPENSG00000145041.11876.682101258.43930-0.521504.130003.36010HepG2GPKOW
VPRBPENSG00000145041.11609.91380803.36750-0.397502.868002.21010HepG2HNRNPA1
VPRBPENSG00000145041.11843.448201071.54450-0.345303.486102.45490HepG2HNRNPA2B1
VPRBPENSG00000145041.11662.25230893.61100-0.432303.288502.53810HepG2HNRNPC
VPRBPENSG00000145041.111023.43360770.472000.409503.032702.30280HepG2HNRNPK
VPRBPENSG00000145041.11823.320801200.95340-0.544704.903604.09000HepG2HNRNPLL
VPRBPENSG00000145041.11685.00180887.53630-0.373702.938001.95740HepG2HNRNPM
VPRBPENSG00000145041.11676.07880887.70200-0.392904.427203.67560HepG2HNRNPU
VPRBPENSG00000145041.11655.88770906.75600-0.467306.689805.59940HepG2ILF2
VPRBPENSG00000145041.11651.66880844.62870-0.374202.119201.56180HepG2NCBP2
VPRBPENSG00000145041.11622.28990887.21870-0.511702.813001.76450HepG2PCBP2
VPRBPENSG00000145041.11723.696101103.64400-0.608806.888206.00270HepG2PUF60
VPRBPENSG00000145041.11962.337101170.71750-0.282802.172901.57560HepG2PUM2
VPRBPENSG00000145041.11718.28740872.18930-0.280102.594401.99230HepG2PUS1
VPRBPENSG00000145041.11855.423701312.44950-0.617609.943709.09860HepG2RBM22
VPRBPENSG00000145041.11751.641501068.70580-0.507704.766203.90210HepG2RPLP0
VPRBPENSG00000145041.11630.31960823.84320-0.386302.381001.63400HepG2RPS2
VPRBPENSG00000145041.111844.231101284.714800.521502.000401.42520HepG2SF3A3
VPRBPENSG00000145041.11665.90190921.87850-0.469306.620905.69210HepG2SMN1
VPRBPENSG00000145041.111005.001801482.32040-0.560709.401908.62840HepG2SRFBP1
VPRBPENSG00000145041.111071.93120906.363900.241902.194101.75990HepG2SRSF1
VPRBPENSG00000145041.11922.640801286.92990-0.480107.875507.09620HepG2SSB
VPRBPENSG00000145041.11474.82970750.67170-0.660804.370803.54890HepG2SUPV3L1
VPRBPENSG00000145041.11613.93120862.51870-0.490504.881504.25580HepG2TIAL1
VPRBPENSG00000145041.11668.00990870.28230-0.381604.134703.47340HepG2TRIM56
VPRBPENSG00000145041.11899.485601139.34630-0.341004.095303.27140HepG2UPF1
VPRBPENSG00000145041.11470.90750687.51760-0.546002.507401.55560HepG2UPF2
VPRBPENSG00000145041.11561.33760738.95240-0.396601.916201.30590HepG2XRN2
VPRBPENSG00000145041.11765.155701135.59460-0.5696010.275109.11810HepG2ZC3H8
VPRBPENSG00000145041.11901.706101253.06180-0.474708.570407.74370HepG2ZNF622
VPRBPENSG00000145041.111575.854901250.581000.333404.416603.72910K562AGGF1
VPRBPENSG00000145041.111028.707701320.10380-0.359802.601801.75790K562BOP1
VPRBPENSG00000145041.111173.589001494.48690-0.348703.233701.94470K562CCDC124
VPRBPENSG00000145041.11984.518401403.61970-0.511706.110604.94940K562CPSF6
VPRBPENSG00000145041.111775.029501400.235500.342104.407803.26540K562DKC1
VPRBPENSG00000145041.11794.18570973.79830-0.294102.576601.42150K562EIF2S1
VPRBPENSG00000145041.111012.562501331.47420-0.395004.741503.83210K562EIF2S2
VPRBPENSG00000145041.111191.303101633.14730-0.455102.945802.06990K562FIP1L1
VPRBPENSG00000145041.111101.524801428.20670-0.374703.024602.12820K562FMR1
VPRBPENSG00000145041.11893.909301210.55870-0.437503.356102.34190K562FTO
VPRBPENSG00000145041.111078.277701340.08790-0.313602.378301.64010K562GPKOW
VPRBPENSG00000145041.111192.974301774.43290-0.572807.380006.13130K562GRSF1
VPRBPENSG00000145041.11732.079501030.65500-0.493504.681103.92500K562HNRNPC
VPRBPENSG00000145041.11890.602801343.17660-0.592804.213903.04820K562HNRNPM
VPRBPENSG00000145041.111334.521802214.35570-0.730605.740504.61020K562HSPD1
VPRBPENSG00000145041.111024.873901308.08520-0.352002.911202.01090K562METAP2
VPRBPENSG00000145041.11695.23510950.35390-0.451003.095901.70610K562NONO
VPRBPENSG00000145041.11867.616501441.87000-0.732808.164706.73720K562PCBP3
VPRBPENSG00000145041.11704.704301105.99710-0.650308.791807.39670K562POLR2G
VPRBPENSG00000145041.111193.067801853.78610-0.635804.922303.77860K562PPIG
VPRBPENSG00000145041.111876.146702435.25630-0.376305.359804.00430K562PUM2
VPRBPENSG00000145041.111803.812401290.469600.483105.134504.42290K562PUS1
VPRBPENSG00000145041.111654.452001257.415700.395805.035904.25740K562RBM15
VPRBPENSG00000145041.11719.21000956.32830-0.411102.400101.64130K562RPS19
VPRBPENSG00000145041.11681.32590959.94440-0.494602.813801.47560K562RRP9
VPRBPENSG00000145041.111258.64130985.364700.353002.927001.81390K562SAFB
VPRBPENSG00000145041.111164.51450953.834600.287802.297301.52040K562SF3B4
VPRBPENSG00000145041.11768.22480969.30550-0.335402.252101.32390K562SRSF5
VPRBPENSG00000145041.111339.341201109.297500.271802.248101.50670K562SYNCRIP
VPRBPENSG00000145041.111484.851301766.09080-0.250202.699001.44610K562TROVE2
VPRBPENSG00000145041.111217.20440889.076300.453103.201102.01060K562U2AF1
VPRBPENSG00000145041.111146.44810918.392900.319902.713901.91790K562U2AF2
VPRBPENSG00000145041.11610.25020962.07820-0.656806.247304.64880K562UCHL5
VPRBPENSG00000145041.11961.341701707.05560-0.8284023.7596021.91420K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPRBP is not available on ENCORE database.





7 RBPs can affect the splicing of VPRBP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVPRBPENSG00000145041.11chr3-5153074951530796515177345151785251533888515340100.503000.001590.03035includedK562SRSF1
SEVPRBPENSG00000145041.11chr3-5153074951530796515177345151785251533888515340100.625000.000480.04539includedK562XRCC6
SEVPRBPENSG00000145041.11chr3-5153074951530796515177345151785251533888515340100.512000.000010.00088includedK562FXR1
SEVPRBPENSG00000145041.11chr3-515307495153079651517734515178525153388851534010-0.570000.000040.07459excludedK562DHX30
SEVPRBPENSG00000145041.11chr3-5153074951530796515177345151785251533888515340100.627000.003730.07108includedHepG2SRSF1
SEVPRBPENSG00000145041.11chr3-515008185150089251497129514972435150494451505021-0.121000.000020.01655excludedK562PUM2
SEVPRBPENSG00000145041.11chr3-515307495153079651517734515178525153388851534010-0.597000.000280.01412excludedHepG2HNRNPC
A3SSVPRBPENSG00000145041.11chr3-5147575451475948514757545147591351477781514779190.073000.002170.01386longerK562AQR
A3SSVPRBPENSG00000145041.11chr3-5145424051454361514542405145432551455569514556520.054000.020370.09684longerK562AQR
A3SSVPRBPENSG00000145041.11chr3-5143616551436327514361655143625851440576514408290.114000.000010.00013longerK562AQR
A3SSVPRBPENSG00000145041.11chr3-5147498551475168514749855147508751475400514759130.130000.000180.00151longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VPRBP is not avaliable on ENCORE database.