TUFT1

General Information

Gene Name       : TUFT1
Gene ID             : ENSG00000143367.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TUFT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TUFT1ENSG00000143367.152.522.472.50ENCSR000AEF
HepG2TUFT1ENSG00000143367.154.915.155.03ENCSR985KAT
K562TUFT1ENSG00000143367.151.581.271.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TUFT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TUFT1 RNA is bound by 5 proteins.  







eCLIP assay for TUFT1 is not avaliable on ENCORE database.





5 proteins are bound to TUFT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1151555804151555882+3'-UTR5.271967.35154K562UPF1
chr1151555167151555242+3'-UTR4.609698.51603K562UPF1
chr1151555987151556026+3'-UTR4.252893.54010K562UPF1
chr1151536376151536467+CDS,intron-Proximal3.475843.66187K562ZNF622
chr1151528789151528924+intron-Distal6.2756816.44511HepG2PCBP2
chr1151538453151538567+intron-Distal,intron-Proximal4.727585.75114HepG2PTBP1
chr1151528797151528922+intron-Distal4.133823.57018HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TUFT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TUFT1 is not available on ENCORE database.

  • 85 RBPs can affect the levels of TUFT1.  








The Knockdown/knockout RNA-Seq assay for TUFT1 is not available on ENCORE database.





85 RBPs can affect the gene expression of TUFT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TUFT1ENSG00000143367.11353.43040469.42630-0.409501.737801.30590HepG2AKAP1
TUFT1ENSG00000143367.11341.91530217.675800.651405.033304.02440HepG2AKAP8L
TUFT1ENSG00000143367.11304.16520151.860001.002007.197206.28540HepG2BOP1
TUFT1ENSG00000143367.11487.46630369.025100.401502.104301.42430HepG2CIRBP
TUFT1ENSG00000143367.11133.12730279.18520-1.068405.574304.48520HepG2CNOT7
TUFT1ENSG00000143367.11398.05800187.575001.0854010.088008.88110HepG2DDX21
TUFT1ENSG00000143367.11622.08150449.702600.468002.815502.18480HepG2DDX3X
TUFT1ENSG00000143367.11507.23430312.756000.697507.078505.85090HepG2EIF4G1
TUFT1ENSG00000143367.11299.60970211.709600.500902.432201.65050HepG2EWSR1
TUFT1ENSG00000143367.11291.14180139.660801.059703.684702.50640HepG2FTO
TUFT1ENSG00000143367.11292.99720414.01560-0.498802.543501.87880HepG2FXR1
TUFT1ENSG00000143367.11225.52290388.82990-0.785905.322204.37630HepG2HNRNPK
TUFT1ENSG00000143367.11313.28370214.613100.545603.290402.50640HepG2IGF2BP1
TUFT1ENSG00000143367.11273.73280414.15970-0.597403.378902.65320HepG2MAGOH
TUFT1ENSG00000143367.11377.16350194.402500.956007.469606.20150HepG2MSI2
TUFT1ENSG00000143367.11287.65110195.058500.560302.356501.35570HepG2NONO
TUFT1ENSG00000143367.11459.40080255.180200.848104.539503.38270HepG2PABPC1
TUFT1ENSG00000143367.11262.27070357.54170-0.447102.681402.08210HepG2PCBP1
TUFT1ENSG00000143367.11239.35900164.165100.543902.340001.59400HepG2PRPF8
TUFT1ENSG00000143367.11211.60960318.55130-0.590104.484003.76890HepG2PUM1
TUFT1ENSG00000143367.11291.58410220.713600.401602.152201.59240HepG2PUS1
TUFT1ENSG00000143367.11339.05730223.529700.601002.132401.50760HepG2RAVER1
TUFT1ENSG00000143367.11363.22970267.952400.438802.504001.68500HepG2RBM15
TUFT1ENSG00000143367.11431.35090328.884500.391202.341301.85430HepG2RBM22
TUFT1ENSG00000143367.11268.10490377.14690-0.492303.039702.39760HepG2RECQL
TUFT1ENSG00000143367.11408.16620234.758400.797906.201205.23500HepG2RPLP0
TUFT1ENSG00000143367.11564.01320286.204200.978607.800006.62790HepG2SF3A3
TUFT1ENSG00000143367.11317.88630149.252901.090708.330207.16800HepG2SF3B1
TUFT1ENSG00000143367.11424.18890166.073201.352802.527201.78180HepG2SNRNP70
TUFT1ENSG00000143367.11735.36400371.468900.9851018.1472017.16260HepG2SRFBP1
TUFT1ENSG00000143367.11277.77170214.117400.375401.913901.32410HepG2SRSF7
TUFT1ENSG00000143367.11408.60930322.533500.341202.098501.63590HepG2SSB
TUFT1ENSG00000143367.11182.99380336.96840-0.880808.255107.27710HepG2SUCLG1
TUFT1ENSG00000143367.11482.63340211.680601.1889011.6675010.43830HepG2SUPV3L1
TUFT1ENSG00000143367.11217.39350147.024100.564202.202701.54510HepG2TARDBP
TUFT1ENSG00000143367.11510.31710205.513501.3121013.5836012.15540HepG2U2AF1
TUFT1ENSG00000143367.11341.52450245.051900.478802.898702.28960HepG2UTP3
TUFT1ENSG00000143367.11475.60070279.152300.768609.401508.54550HepG2ZNF622
TUFT1ENSG00000143367.11187.2750097.797800.937204.567902.97030K562ABCF1
TUFT1ENSG00000143367.11657.08820329.515900.9956016.6714015.40270K562AGGF1
TUFT1ENSG00000143367.11492.40950362.143400.443202.729301.75500K562AKAP8
TUFT1ENSG00000143367.11525.53750342.889800.615904.872503.99570K562AKAP8L
TUFT1ENSG00000143367.11172.40200102.148400.755003.569402.47300K562BCLAF1
TUFT1ENSG00000143367.11119.1374058.666801.021903.428302.45860K562BOP1
TUFT1ENSG00000143367.11269.45150130.899501.041506.527104.20450K562CKAP4
TUFT1ENSG00000143367.11150.9706062.383901.274906.273105.09520K562CPSF6
TUFT1ENSG00000143367.11409.56650231.297300.824202.808601.82700K562CELF1
TUFT1ENSG00000143367.11171.1606092.590300.886303.424001.99430K562EEF2
TUFT1ENSG00000143367.11110.3671069.303300.671202.041701.40760K562EIF2S2
TUFT1ENSG00000143367.11153.3636070.324301.124804.175303.12090K562FIP1L1
TUFT1ENSG00000143367.11122.1946063.465900.945003.289302.35210K562FMR1
TUFT1ENSG00000143367.11118.2357053.789501.136204.182003.03830K562FTO
TUFT1ENSG00000143367.1190.60000177.45480-0.969905.137104.34830K562FXR1
TUFT1ENSG00000143367.11159.87620101.825000.650802.801901.65520K562GLRX3
TUFT1ENSG00000143367.11132.0834059.564701.148804.719003.68710K562GPKOW
TUFT1ENSG00000143367.11212.0035092.334301.199006.493205.32780K562GRSF1
TUFT1ENSG00000143367.11218.44800115.058300.924803.761301.48840K562HLTF
TUFT1ENSG00000143367.11415.32340219.225700.921703.987102.44010K562HNRNPA2B1
TUFT1ENSG00000143367.11320.88870103.983801.6256016.0720014.71190K562HNRNPC
TUFT1ENSG00000143367.11226.72890112.258401.014004.045502.30860K562ILF2
TUFT1ENSG00000143367.11611.61340363.844300.749208.399106.76010K562KIF1C
TUFT1ENSG00000143367.11122.7722050.851901.271504.434603.22210K562KRR1
TUFT1ENSG00000143367.11533.39610348.327100.614702.464801.46900K562MAK16
TUFT1ENSG00000143367.11149.9614058.140301.366903.996002.93160K562METAP2
TUFT1ENSG00000143367.11398.55590200.319000.992403.878902.54590K562MSI2
TUFT1ENSG00000143367.11468.38070285.705100.713102.122801.37310K562NAA15
TUFT1ENSG00000143367.11233.68370118.925600.974407.180206.05980K562NSUN2
TUFT1ENSG00000143367.11242.54060150.233200.690903.341601.32610K562PABPC4
TUFT1ENSG00000143367.11356.34420191.783100.893703.557402.39430K562PABPN1
TUFT1ENSG00000143367.11512.25260175.044101.5490018.0542016.00460K562PCBP3
TUFT1ENSG00000143367.11373.38660134.275101.475406.203705.00910K562POLR2G
TUFT1ENSG00000143367.11139.5078079.850900.804903.257702.35480K562PPIG
TUFT1ENSG00000143367.11475.42080228.031201.059904.885802.77930K562PPP1R8
TUFT1ENSG00000143367.1184.87120171.23870-1.012705.798804.86580K562PTBP1
TUFT1ENSG00000143367.11603.32400339.955600.827503.423202.82830K562PUS1
TUFT1ENSG00000143367.11605.21470331.315900.869104.949804.17780K562RBM15
TUFT1ENSG00000143367.11174.8585088.687200.979304.222503.20960K562RPS19
TUFT1ENSG00000143367.11190.32960291.97950-0.617402.661201.68000K562RPS3
TUFT1ENSG00000143367.11187.9543089.022601.078004.757103.00580K562RRP9
TUFT1ENSG00000143367.11208.65950112.002100.897503.458201.70680K562SBDS
TUFT1ENSG00000143367.11117.0070056.635701.046703.430002.34450K562SF3B1
TUFT1ENSG00000143367.11124.8703065.050100.940703.594402.13640K562SLBP
TUFT1ENSG00000143367.11194.88250120.274200.696203.578902.53060K562SRPK2
TUFT1ENSG00000143367.11187.7493084.362901.154006.292004.32900K562STAU1
TUFT1ENSG00000143367.11652.07040240.943701.436208.821905.82940K562SUPT6H
TUFT1ENSG00000143367.1146.62210134.66720-1.530308.097406.68480K562SYNCRIP
TUFT1ENSG00000143367.11195.1276095.290101.033904.622403.32830K562TRIM56
TUFT1ENSG00000143367.11180.5673082.193401.135305.975803.79230K562TRIP6
TUFT1ENSG00000143367.11174.0513089.220400.964004.426403.10850K562UCHL5
TUFT1ENSG00000143367.11656.10380344.777700.928205.438903.43620K562UTP18
TUFT1ENSG00000143367.11213.09550107.897500.981705.614004.34780K562WDR3
TUFT1ENSG00000143367.11453.12770237.054600.934603.856201.85010K562YTHDC2
TUFT1ENSG00000143367.11382.97190179.549501.092804.714403.54310K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TUFT1 is not available on ENCORE database.





5 RBPs can affect the splicing of TUFT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETUFT1ENSG00000143367.11chr1+151534566151534641151512809151512902151535060151535162-0.542000.000200.08473excludedK562SMNDC1
SETUFT1ENSG00000143367.11chr1+151535060151535162151512783151512902151536379151536466-0.218000.004020.05269excludedK562PUS1
SETUFT1ENSG00000143367.11chr1+1515345661515346411515128091515129021515350601515351620.244000.001150.02857includedHepG2SRSF1
SETUFT1ENSG00000143367.11chr1+1515345661515346411515128091515129021515350601515351620.309000.000460.03825includedK562HNRNPUL1
SETUFT1ENSG00000143367.11chr1+151534566151534641151512809151512902151535060151535162-0.197000.001330.03486excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TUFT1 is not avaliable on ENCORE database.