TRNT1

General Information

Gene Name       : TRNT1
Gene ID             : ENSG00000072756.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRNT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRNT1ENSG00000072756.1626.9423.1925.07ENCSR000AEF
HepG2TRNT1ENSG00000072756.1611.7524.6318.19ENCSR985KAT
K562TRNT1ENSG00000072756.1624.0626.7525.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRNT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRNT1 RNA is bound by 11 proteins.  







eCLIP assay for TRNT1 is not avaliable on ENCORE database.





11 proteins are bound to TRNT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr331904233190471+3'-UTR,intron-Distal4.264033.92684K562KHSRP
chr331904293190486+3'-UTR,intron-Distal3.995603.40087HepG2RBFOX2
chr331899043189967+3'-UTR,intron-Proximal4.737304.44893K562RBM22
chr331901773190270+3'-UTR,intron-Distal4.759315.37430HepG2KHSRP
chr331902883190420+3'-UTR,intron-Distal3.239366.69430K562KHSRP
chr331898323189906+3'-UTR,CDS,intron-Proximal5.141265.35117HepG2PRPF8
chr331898453189957+3'-UTR,intron-Proximal3.280437.76777K562PRPF8
chr331905263190598+3'-UTR,intron-Distal3.230683.78824HepG2KHSRP
chr331902963190362+3'-UTR,intron-Distal3.147013.06355HepG2KHSRP
chr331906543190716+3'-UTR,intron-Distal,intron-Proximal,polyA_site4.360354.79379K562KHSRP
chr331905213190596+3'-UTR,intron-Distal5.104077.91159K562KHSRP
chr331897473189792+CDS4.081603.20027K562ZNF622
chr331822093182325+CDS3.215043.80299HepG2GRWD1
chr331862873186389+CDS4.980335.23259HepG2BCLAF1
chr331881073188168+CDS,intron-Proximal3.225094.34695HepG2BCLAF1
chr331829623183111+intron-Distal3.833596.39350HepG2HNRNPL
chr331857963185866+intron-Distal4.090074.54401K562KHSRP
chr331883363188407+intron-Distal,intron-Proximal4.724535.28751K562RBM22
chr331778663177959+intron-Distal4.690653.78162K562HNRNPM
chr331872273187321+intron-Distal3.984326.89837K562KHSRP
chr331843953184472+intron-Distal4.076827.25163K562U2AF2
chr331830483183118+intron-Distal3.452787.26179K562HNRNPL
chr331771583177204+intron-Distal4.470025.12361K562EXOSC5
chr331861073186168+intron-Distal4.737807.61259K562KHSRP
chr331844023184465+intron-Distal3.091924.62823HepG2U2AF2
chr331879903188103+intron-Distal,intron-Proximal4.233064.96658K562KHSRP
chr331895253189575+intron-Proximal3.044973.51696K562KHSRP
chr331823373182398+intron-Proximal5.156598.45448K562PRPF8
chr331861683186217+intron-Proximal4.737276.28383K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRNT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRNT1 is not available on ENCORE database.

  • 74 RBPs can affect the levels of TRNT1.  








The Knockdown/knockout RNA-Seq assay for TRNT1 is not available on ENCORE database.





74 RBPs can affect the gene expression of TRNT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRNT1ENSG00000072756.12245.64080343.48960-0.483702.466401.52500HepG2ADAR
TRNT1ENSG00000072756.12672.79230447.328000.588703.683303.08200HepG2AKAP1
TRNT1ENSG00000072756.12501.34900649.24090-0.372903.234202.50150HepG2AUH
TRNT1ENSG00000072756.12329.11300584.62010-0.828903.401502.30990HepG2CCAR1
TRNT1ENSG00000072756.12262.34290415.14960-0.662204.251303.41500HepG2CPSF6
TRNT1ENSG00000072756.12482.49150583.99530-0.275502.151401.48520HepG2DAZAP1
TRNT1ENSG00000072756.12278.44080367.14090-0.399002.289901.66350HepG2DKC1
TRNT1ENSG00000072756.12195.07750345.88330-0.826207.153806.06630HepG2DNAJC21
TRNT1ENSG00000072756.12250.33140342.81540-0.453603.159202.47010HepG2DNAJC2
TRNT1ENSG00000072756.12225.02960317.45660-0.496402.137401.32710HepG2EEF2
TRNT1ENSG00000072756.12218.67710353.87300-0.694404.061003.35230HepG2EIF2S1
TRNT1ENSG00000072756.12290.01420391.08820-0.431401.874301.34420HepG2EIF4A3
TRNT1ENSG00000072756.12567.19960380.746900.574902.903702.19970HepG2EIF4B
TRNT1ENSG00000072756.12397.83970551.85890-0.472103.148402.28200HepG2EIF4G2
TRNT1ENSG00000072756.12135.60230229.45190-0.758804.028102.93520HepG2GEMIN5
TRNT1ENSG00000072756.12304.90310470.61790-0.626203.729402.99520HepG2GPKOW
TRNT1ENSG00000072756.12261.02080388.41240-0.573403.304802.55260HepG2HNRNPC
TRNT1ENSG00000072756.12262.20250409.32970-0.642605.113804.17680HepG2HNRNPF
TRNT1ENSG00000072756.12357.46540531.99910-0.573604.263603.43990HepG2HNRNPL
TRNT1ENSG00000072756.12263.03260449.11810-0.771905.484704.62910HepG2HNRNPLL
TRNT1ENSG00000072756.12247.51830403.07890-0.703505.208304.24740HepG2IGF2BP1
TRNT1ENSG00000072756.12251.74830394.12850-0.646706.551305.47100HepG2ILF2
TRNT1ENSG00000072756.12430.30050336.106400.356302.254601.69630HepG2PCBP1
TRNT1ENSG00000072756.12215.39470344.14350-0.676005.243604.25820HepG2PPIL4
TRNT1ENSG00000072756.12464.23900342.003200.440802.017501.53720HepG2PTBP1
TRNT1ENSG00000072756.12392.32170552.76460-0.494603.694703.01700HepG2PUF60
TRNT1ENSG00000072756.12287.90260440.85920-0.614703.866703.08100HepG2RPLP0
TRNT1ENSG00000072756.12177.13250250.75840-0.501502.251201.69120HepG2RPS19
TRNT1ENSG00000072756.12288.79190573.91430-0.990802.818701.45170HepG2SF1
TRNT1ENSG00000072756.12282.23820444.54600-0.655404.460903.58270HepG2SF3B1
TRNT1ENSG00000072756.12528.96070356.065200.570905.111304.34930HepG2SF3B4
TRNT1ENSG00000072756.12317.05740400.71710-0.337802.116701.54300HepG2SMN1
TRNT1ENSG00000072756.12565.19710703.70610-0.316202.705902.20750HepG2SRFBP1
TRNT1ENSG00000072756.12539.32090371.656700.537104.633804.06140HepG2SRSF1
TRNT1ENSG00000072756.12433.81180545.74360-0.331202.448201.85490HepG2SRSF5
TRNT1ENSG00000072756.12293.29430402.13230-0.455302.824102.12120HepG2SRSF7
TRNT1ENSG00000072756.12433.45070610.95070-0.495205.104504.44950HepG2SSB
TRNT1ENSG00000072756.12480.96820620.68730-0.367903.259002.59510HepG2SUCLG1
TRNT1ENSG00000072756.12410.20870306.954500.418202.537601.73470HepG2TIA1
TRNT1ENSG00000072756.12184.23040374.93730-1.0251010.124309.27200HepG2TIAL1
TRNT1ENSG00000072756.12309.33860596.70070-0.947802.616101.65840HepG2U2AF2
TRNT1ENSG00000072756.12297.19620375.32180-0.336701.899001.30210HepG2UPF1
TRNT1ENSG00000072756.12190.62130387.56700-1.023702.206401.31480HepG2UPF2
TRNT1ENSG00000072756.12624.71540851.12540-0.446204.803504.09040K562AGGF1
TRNT1ENSG00000072756.12677.60460935.22530-0.464904.097402.85030K562AKAP8
TRNT1ENSG00000072756.12515.65720724.16520-0.489903.441402.46920K562BOP1
TRNT1ENSG00000072756.12966.440501453.48770-0.588803.183802.03250K562CNOT7
TRNT1ENSG00000072756.12511.87080770.00900-0.589105.905204.76380K562CPSF6
TRNT1ENSG00000072756.12430.42290588.93320-0.452303.434402.23620K562CSTF2
TRNT1ENSG00000072756.12635.34740888.29630-0.483503.273202.34780K562FIP1L1
TRNT1ENSG00000072756.12519.04590783.43950-0.594005.117403.94850K562FMR1
TRNT1ENSG00000072756.12490.48000664.02420-0.437002.704601.80050K562FTO
TRNT1ENSG00000072756.12952.61550692.273300.460502.753502.04830K562G3BP2
TRNT1ENSG00000072756.12450.60110735.18000-0.706205.466604.35600K562GPKOW
TRNT1ENSG00000072756.12950.030801420.07920-0.579904.218403.28790K562GRSF1
TRNT1ENSG00000072756.12411.82360654.15410-0.667604.136803.42190K562HNRNPC
TRNT1ENSG00000072756.12413.04310584.01600-0.499702.922401.74750K562HNRNPF
TRNT1ENSG00000072756.12838.579201162.92880-0.471704.815103.37970K562HNRNPL
TRNT1ENSG00000072756.12628.06430841.72440-0.422403.376502.02520K562IGF2BP3
TRNT1ENSG00000072756.12670.60810899.69200-0.424003.099001.94420K562MAK16
TRNT1ENSG00000072756.12484.52090717.61310-0.566605.030103.83050K562METAP2
TRNT1ENSG00000072756.12430.62310597.55170-0.472602.613801.37050K562NONO
TRNT1ENSG00000072756.12760.08370971.27110-0.353704.289603.38240K562NSUN2
TRNT1ENSG00000072756.12450.68710954.10960-1.082004.018702.76970K562PABPN1
TRNT1ENSG00000072756.12756.430501008.30980-0.414702.853702.01910K562PPIG
TRNT1ENSG00000072756.12429.29650586.47750-0.450102.211801.41120K562PSIP1
TRNT1ENSG00000072756.121674.322601983.25890-0.244302.172101.32020K562PUM2
TRNT1ENSG00000072756.12723.07440878.35640-0.280701.820001.36110K562PUS1
TRNT1ENSG00000072756.12693.37660855.77800-0.303602.323801.77240K562RBM15
TRNT1ENSG00000072756.12799.587201323.85200-0.727403.500101.73590K562SBDS
TRNT1ENSG00000072756.12529.720001064.63120-1.007102.988801.61000K562SFPQ
TRNT1ENSG00000072756.12347.61120507.08250-0.544702.692501.68650K562SRFBP1
TRNT1ENSG00000072756.12585.49230782.34320-0.418202.904801.82470K562SRSF5
TRNT1ENSG00000072756.12623.74920808.79810-0.374802.826201.99860K562TIA1
TRNT1ENSG00000072756.12346.28720564.11670-0.704004.397703.19750K562TIAL1
TRNT1ENSG00000072756.12617.04990793.55820-0.362902.360401.36830K562TRA2A
TRNT1ENSG00000072756.12377.08130599.08500-0.667902.788601.83760K562TRIM56
TRNT1ENSG00000072756.12738.693001002.46880-0.440505.106403.37060K562TROVE2
TRNT1ENSG00000072756.12424.01020605.21270-0.513302.830701.79790K562UCHL5
TRNT1ENSG00000072756.12773.237901029.86210-0.413504.996304.06090K562UPF1
TRNT1ENSG00000072756.12639.38460881.21590-0.462804.177803.09460K562WDR3
TRNT1ENSG00000072756.121332.365701670.55980-0.326302.900601.57450K562WRN
TRNT1ENSG00000072756.12441.30990616.12490-0.481402.742201.54380K562XRN2
TRNT1ENSG00000072756.121196.606301588.40740-0.408603.930702.86980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRNT1 is not available on ENCORE database.





6 RBPs can affect the splicing of TRNT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRNT1ENSG00000072756.12chr3+318219331823323178943317913731862673186394-0.140000.000100.00164excludedK562AQR
SETRNT1ENSG00000072756.12chr3+3184577318474231821933182332318626731863940.075000.000000.00035includedK562NPM1
SETRNT1ENSG00000072756.12chr3+3184577318474231821933182332318626731863940.072000.000080.00227includedK562HNRNPC
SETRNT1ENSG00000072756.12chr3+3178359317848131707233170872317894331790460.160000.000000.00001includedK562HNRNPC
A3SSTRNT1ENSG00000072756.12chr3+3188099318830731881133188307318626731863940.343000.000000.00000longerK562AQR
A3SSTRNT1ENSG00000072756.12chr3+318809931883073188113318830731862673186394-0.152000.001010.04622shorterK562U2AF1
MXETRNT1ENSG00000072756.12chr3+31789433179137318219331823323170697317087231862673186394-0.186000.001200.094362includedHepG2RBM22
MXETRNT1ENSG00000072756.12chr3+318793831880833188113318825531862673186394318913331893870.056000.012460.075671includedK562AQR
MXETRNT1ENSG00000072756.12chr3+318793831880833188113318824731862673186394318913331893870.053000.013550.080771includedK562AQR
MXETRNT1ENSG00000072756.12chr3+318626731863943188099318830731789433179137318913331893870.200000.000000.000001includedK562AQR
MXETRNT1ENSG00000072756.12chr3+318623631863943188099318830731789433179137318913331893870.080000.000120.001441includedK562AQR
MXETRNT1ENSG00000072756.12chr3+318619031863943188099318830731789433179137318913331893870.052000.002320.018841includedK562AQR
MXETRNT1ENSG00000072756.12chr3+317894331791373182193318233231706973170872318626731863940.195000.000520.004711includedHepG2U2AF2
MXETRNT1ENSG00000072756.12chr3+317897431791373182193318233231706973170872318626731863940.098000.000610.005381includedHepG2U2AF2
MXETRNT1ENSG00000072756.12chr3+318219331822623189133318938731789433179137318958931898710.201000.000420.039321includedK562RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRNT1 is not avaliable on ENCORE database.