TOMM40L

General Information

Gene Name       : TOMM40L
Gene ID             : ENSG00000158882.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TOMM40L)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TOMM40LENSG00000158882.1410.4312.6211.52ENCSR000AEF
HepG2TOMM40LENSG00000158882.1414.9214.4614.69ENCSR985KAT
K562TOMM40LENSG00000158882.1424.1322.6223.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TOMM40L is not avaliable on ENCORE database.



Proteins bound to RNA
  • TOMM40L RNA is bound by 6 proteins.  







eCLIP assay for TOMM40L is not avaliable on ENCORE database.





6 proteins are bound to TOMM40L RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1161199208161199275+3'-UTR3.371413.06830K562UPF1
chr1161199500161199592+3'-UTR4.314083.92497HepG2UPF1
chr1161196077161196164+5'-UTR,intron-Distal,intron-Proximal6.060048.08771HepG2EFTUD2
chr1161196091161196166+5'-UTR,intron-Distal,intron-Proximal4.027314.98250K562AQR
chr1161196080161196155+5'-UTR,intron-Distal,intron-Proximal4.896916.74224HepG2AQR
chr1161196715161196728+CDS,intron-Distal3.688083.01531K562YBX3
chr1161197502161197563+CDS,intron-Distal,intron-Proximal4.773994.02817HepG2PRPF8
chr1161196728161196745+CDS,intron-Distal3.945374.12025K562YBX3
chr1161198134161198237+CDS,intron-Proximal5.247596.44303K562AQR
chr1161197088161197104+CDS,intron-Distal4.629695.20509K562YBX3
chr1161197717161197780+CDS,intron-Proximal3.551124.52024HepG2PPIG
chr1161197058161197088+CDS,intron-Distal3.738105.37252K562YBX3
chr1161198090161198201+CDS,intron-Proximal5.6778510.32702HepG2AQR
chr1161196689161196775+CDS,intron-Distal,intron-Proximal3.834996.18341HepG2PRPF8
chr1161196728161196797+CDS,intron-Distal,intron-Proximal4.508394.96013K562PRPF8
chr1161197104161197138+CDS,intron-Distal4.131153.67607K562YBX3
chr1161198073161198125+CDS,intron-Proximal4.052195.05356HepG2PRPF8
chr1161195975161196092+intron-Distal,intron-Proximal3.647134.83721K562EFTUD2
chr1161195951161196080+intron-Distal,intron-Proximal4.074996.19659HepG2AQR
chr1161198125161198204+intron-Proximal3.995526.95612HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TOMM40L is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TOMM40L is not available on ENCORE database.

  • 84 RBPs can affect the levels of TOMM40L.  








The Knockdown/knockout RNA-Seq assay for TOMM40L is not available on ENCORE database.





84 RBPs can affect the gene expression of TOMM40L :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TOMM40LENSG00000158882.8964.56950658.432800.550703.781303.17340HepG2AKAP1
TOMM40LENSG00000158882.8702.09490544.800300.365802.048101.36810HepG2ASCC1
TOMM40LENSG00000158882.8730.61900968.32560-0.406404.620903.77340HepG2AUH
TOMM40LENSG00000158882.8696.40270306.209901.1853016.3046015.02780HepG2BOP1
TOMM40LENSG00000158882.8636.44010496.891100.357003.212002.50520HepG2CKAP4
TOMM40LENSG00000158882.8481.92340240.689201.001505.441804.36630HepG2CNOT7
TOMM40LENSG00000158882.8486.35020281.114000.790706.461605.44470HepG2CPSF6
TOMM40LENSG00000158882.8861.04480636.353900.436205.874204.85080HepG2DAZAP1
TOMM40LENSG00000158882.8687.22680459.655700.580108.001806.70960HepG2DDX19B
TOMM40LENSG00000158882.8675.46840369.119700.871709.260507.54010HepG2DDX5
TOMM40LENSG00000158882.8470.28010339.142900.471502.990101.76780HepG2EIF2S2
TOMM40LENSG00000158882.81004.78770575.616600.803607.691706.62780HepG2EIF4A3
TOMM40LENSG00000158882.8216.67100345.51130-0.673204.298703.33130HepG2FUBP3
TOMM40LENSG00000158882.8460.32170318.655400.530502.858702.20830HepG2GPKOW
TOMM40LENSG00000158882.8733.94750584.861500.327502.890601.93820HepG2HNRNPA2B1
TOMM40LENSG00000158882.8515.31240356.208400.532603.450502.68190HepG2HNRNPC
TOMM40LENSG00000158882.8397.50440545.50520-0.456602.694902.00510HepG2HNRNPK
TOMM40LENSG00000158882.8462.53720353.854100.386302.735802.13200HepG2HNRNPU
TOMM40LENSG00000158882.8716.43060547.625700.387502.366301.73580HepG2IGF2BP2
TOMM40LENSG00000158882.8918.78340580.957200.661205.848304.90510HepG2MAGOH
TOMM40LENSG00000158882.8800.98000597.975700.421602.603801.98800HepG2NCBP2
TOMM40LENSG00000158882.8570.03580376.131500.599703.368901.78360HepG2NKRF
TOMM40LENSG00000158882.8504.91680631.01100-0.321602.053701.39430HepG2NOL12
TOMM40LENSG00000158882.8192.87900269.64910-0.483401.951801.31830HepG2NSUN2
TOMM40LENSG00000158882.889.29830219.91650-1.300304.591903.42890HepG2PABPC1
TOMM40LENSG00000158882.8331.58350484.04750-0.545804.798103.81090HepG2PRPF4
TOMM40LENSG00000158882.8231.14710362.37680-0.648703.673702.75810HepG2PRPF8
TOMM40LENSG00000158882.8851.29080559.998800.604106.089405.34040HepG2PTBP1
TOMM40LENSG00000158882.8753.51460639.470300.236702.178801.63970HepG2PUM1
TOMM40LENSG00000158882.8456.35780638.98900-0.485603.827503.04280HepG2PUM2
TOMM40LENSG00000158882.8745.48160506.231000.558307.295006.37360HepG2PUS1
TOMM40LENSG00000158882.81137.74690929.227000.292002.664302.15340HepG2RBM22
TOMM40LENSG00000158882.8721.52410550.496500.390202.100801.50790HepG2RBM25
TOMM40LENSG00000158882.8930.88720666.452900.482003.931603.14060HepG2RPLP0
TOMM40LENSG00000158882.8419.45570241.463100.796604.813703.75830HepG2RPS3A
TOMM40LENSG00000158882.8544.07100367.502400.565906.079805.18460HepG2SMN1
TOMM40LENSG00000158882.8751.567001049.53050-0.481806.558005.87680HepG2SRFBP1
TOMM40LENSG00000158882.8715.42670594.784800.266302.140901.58170HepG2SRSF5
TOMM40LENSG00000158882.8756.16740607.796400.315002.514601.84830HepG2SRSF7
TOMM40LENSG00000158882.8749.15970495.111700.597406.702605.91110HepG2SRSF9
TOMM40LENSG00000158882.8525.05930911.24590-0.7954014.6380013.64620HepG2SSB
TOMM40LENSG00000158882.8583.27380386.175200.594804.106903.34760HepG2U2AF1
TOMM40LENSG00000158882.8542.38490371.439200.546102.801201.74030HepG2XRCC6
TOMM40LENSG00000158882.8145.72480348.01130-1.255905.771304.99960K562AGGF1
TOMM40LENSG00000158882.8246.13320362.10500-0.557002.508401.88580K562AKAP8L
TOMM40LENSG00000158882.8546.218201206.36380-1.1431012.0385010.93960K562AQR
TOMM40LENSG00000158882.8200.67790327.56600-0.706904.073303.01240K562BOP1
TOMM40LENSG00000158882.8413.10070583.48370-0.498203.047701.93440K562CSTF2
TOMM40LENSG00000158882.8491.58350674.19650-0.455703.000901.61730K562DDX27
TOMM40LENSG00000158882.8518.92870699.34050-0.430502.708801.80620K562EFTUD2
TOMM40LENSG00000158882.8700.420701044.86180-0.577008.227807.08740K562EIF2S2
TOMM40LENSG00000158882.8207.59570381.87280-0.879304.449003.14350K562EIF3A
TOMM40LENSG00000158882.8541.15170357.921400.596303.065202.20280K562EIF4A3
TOMM40LENSG00000158882.8289.13750488.62230-0.757006.760604.19530K562FASTKD2
TOMM40LENSG00000158882.8288.52870492.51220-0.771405.828104.08260K562FKBP4
TOMM40LENSG00000158882.8618.59900372.216200.732803.983403.27680K562FXR1
TOMM40LENSG00000158882.8154.46640295.91790-0.937905.510604.43600K562G3BP2
TOMM40LENSG00000158882.8521.42850687.97730-0.399903.311802.06230K562GLRX3
TOMM40LENSG00000158882.8657.68650932.51550-0.503705.089803.64810K562HNRNPA1
TOMM40LENSG00000158882.8415.82020567.65310-0.449002.917902.30720K562HNRNPC
TOMM40LENSG00000158882.8683.298601032.73260-0.595908.093106.56990K562HNRNPU
TOMM40LENSG00000158882.8241.10980384.34180-0.672703.384702.46080K562KIF1C
TOMM40LENSG00000158882.8170.41950283.96030-0.736603.342002.30630K562KRR1
TOMM40LENSG00000158882.8687.15310485.407400.501304.325903.27040K562MAGOH
TOMM40LENSG00000158882.8552.28240723.32680-0.389203.535202.62710K562MTPAP
TOMM40LENSG00000158882.8211.74260301.78050-0.511202.063301.32500K562NAA15
TOMM40LENSG00000158882.8516.58390803.63360-0.6375010.048708.74760K562NSUN2
TOMM40LENSG00000158882.8335.25280474.57430-0.501403.672202.10980K562PCBP1
TOMM40LENSG00000158882.8497.64910709.73240-0.512103.529302.58960K562PCBP3
TOMM40LENSG00000158882.8482.88890680.53710-0.495003.267502.45150K562PRPF8
TOMM40LENSG00000158882.8788.55390471.617900.741509.460008.28320K562PTBP1
TOMM40LENSG00000158882.81091.768501541.90650-0.498004.823503.38390K562PUM1
TOMM40LENSG00000158882.8188.08690359.22690-0.933504.202003.55390K562PUS1
TOMM40LENSG00000158882.8221.37950349.91460-0.660502.851702.25060K562RBM15
TOMM40LENSG00000158882.8957.144501320.43620-0.464204.783902.68980K562RBM17
TOMM40LENSG00000158882.8421.55820693.25110-0.717605.359704.21770K562RPS19
TOMM40LENSG00000158882.8434.13050695.87250-0.680704.339902.67000K562RRP9
TOMM40LENSG00000158882.8618.36880793.05190-0.358902.138101.41370K562SF3A3
TOMM40LENSG00000158882.8201.05450316.28550-0.653603.260602.20240K562SF3B1
TOMM40LENSG00000158882.8300.39760413.50720-0.461002.588501.37110K562SLBP
TOMM40LENSG00000158882.8320.52970440.07870-0.457302.447201.49740K562SRFBP1
TOMM40LENSG00000158882.8499.65600632.32150-0.339702.652101.51230K562SRSF7
TOMM40LENSG00000158882.8442.07730619.68800-0.487204.049202.19990K562SRSF9
TOMM40LENSG00000158882.8302.77990471.12310-0.637805.555003.62620K562SSB
TOMM40LENSG00000158882.8551.47770743.63640-0.431302.657101.43760K562STAU1
TOMM40LENSG00000158882.8475.70110658.99180-0.470202.746601.73370K562SUPV3L1
TOMM40LENSG00000158882.8679.41440546.029500.315202.150501.42600K562SYNCRIP
TOMM40LENSG00000158882.8346.08390451.35120-0.383102.148601.43540K562TIA1
TOMM40LENSG00000158882.8322.41070443.01910-0.458502.543501.50480K562TRA2A
TOMM40LENSG00000158882.8301.39020519.92380-0.786706.823805.18320K562TRIM56
TOMM40LENSG00000158882.8354.68020515.98450-0.540803.456201.45550K562TRNAU1AP
TOMM40LENSG00000158882.8183.65030296.28920-0.690002.850402.03530K562U2AF2
TOMM40LENSG00000158882.8468.35770697.41920-0.574404.323003.02450K562UCHL5
TOMM40LENSG00000158882.8610.20090852.11350-0.481805.657804.67070K562UPF1
TOMM40LENSG00000158882.8226.86170364.09920-0.682502.746301.46180K562UTP18
TOMM40LENSG00000158882.8467.64530729.12050-0.640706.628405.24050K562WDR3
TOMM40LENSG00000158882.8556.66270758.24280-0.445905.001103.89400K562WDR43
TOMM40LENSG00000158882.8735.99430420.180200.808604.165302.13660K562XRCC6
TOMM40LENSG00000158882.8533.08640710.10080-0.413702.532701.39130K562XRN2
TOMM40LENSG00000158882.8872.093601359.18580-0.640205.400804.12700K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TOMM40L is not available on ENCORE database.





4 RBPs can affect the splicing of TOMM40L :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETOMM40LENSG00000158882.8chr1+161197425161197527161197047161197140161197673161197779-0.225000.002460.04025excludedK562HNRNPC
MXETOMM40LENSG00000158882.8chr1+1611961441611963941611970471611971401611957921611959261611974251611975270.298000.000370.010381includedHepG2SRSF1
MXETOMM40LENSG00000158882.8chr1+1611966301611967451611970471611971401611961441611963941611974251611975270.078000.006270.043461includedK562AQR
MXETOMM40LENSG00000158882.8chr1+161196144161196394161196677161196745161195871161195926161197673161197779-0.292000.001970.016462includedK562AQR
MXETOMM40LENSG00000158882.8chr1+1611970471611971401611974251611975271611966771611967451611976731611977790.115000.003580.069441includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TOMM40L is not avaliable on ENCORE database.