TMEM43

General Information

Gene Name : TMEM43
Gene ID : ENSG00000170876.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM43)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM43	ENSG00000170876.7	10.65	11.92	11.29	ENCSR000AEF
HepG2	TMEM43	ENSG00000170876.7	43.86	44.74	44.30	ENCSR985KAT
K562	TMEM43	ENSG00000170876.7	30.00	30.98	30.49	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM43 is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM43 RNA is bound by 18 proteins.

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eCLIP assay for TMEM43 is not avaliable on ENCORE database.

18 proteins are bound to TMEM43 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	14176672	14176733	+	CDS,intron-Proximal	4.82370	22.74441	HepG2	SND1
chr3	14177305	14177360	+	CDS,intron-Proximal	5.13544	20.12489	HepG2	SND1
chr3	14183668	14183827	+	3'-UTR,intron-Distal	5.14852	18.39943	HepG2	UPF1
chr3	14171596	14171644	+	intron-Distal	5.47302	15.04840	K562	PTBP1
chr3	14173146	14173211	+	3'-UTR,CDS,intron-Proximal	4.38647	14.13124	HepG2	PRPF8
chr3	14183296	14183439	+	3'-UTR,intron-Distal	4.77945	12.07264	HepG2	UPF1
chr3	14183199	14183284	+	CDS,intron-Distal	4.16469	10.75945	HepG2	SND1
chr3	14183350	14183521	+	3'-UTR,intron-Distal	4.69871	10.54173	HepG2	AKAP1
chr3	14180694	14180765	+	CDS	3.86118	10.29465	HepG2	SND1
chr3	14183133	14183207	+	CDS,intron-Distal	3.87897	9.24069	K562	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 63 entries

eCLIP assay for TMEM43 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM43 is not available on ENCORE database.
91 RBPs can affect the levels of TMEM43.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM43 is not available on ENCORE database.

91 RBPs can affect the gene expression of TMEM43 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM43	ENSG00000170876.7	3955.53200	2523.77730	0.64820	23.09460	22.01540	HepG2	SRFBP1
TMEM43	ENSG00000170876.7	3396.84920	2222.43440	0.61200	22.72870	21.36450	HepG2	PUM1
TMEM43	ENSG00000170876.7	852.23740	2007.40030	-1.23600	22.52880	20.52220	HepG2	PABPC4
TMEM43	ENSG00000170876.7	3299.71970	2017.03900	0.71000	20.51220	18.13010	K562	EIF4G2
TMEM43	ENSG00000170876.7	1795.52930	971.85760	0.88550	17.07630	15.67310	K562	HNRNPC
TMEM43	ENSG00000170876.7	1332.49640	2173.00880	-0.70560	14.76450	13.48390	HepG2	QKI
TMEM43	ENSG00000170876.7	1077.18590	2053.73240	-0.93100	14.07640	12.43330	HepG2	ASCC1
TMEM43	ENSG00000170876.7	2394.63370	1633.81940	0.55150	13.40740	12.23660	HepG2	UTP3
TMEM43	ENSG00000170876.7	2264.30210	1470.17810	0.62300	13.95950	11.55910	K562	CPEB4
TMEM43	ENSG00000170876.7	3296.67080	2234.51420	0.56090	12.28720	11.35530	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM43 is not available on ENCORE database.

5 RBPs can affect the splicing of TMEM43 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TMEM43	ENSG00000170876.7	chr3	+	14170354	14170585	14166514	14166705	14170911	14171061	0.09600	0.00000	0.00089	included	HepG2	HNRNPL
A5SS	TMEM43	ENSG00000170876.7	chr3	+	14170911	14171146	14170911	14171061	14172321	14172456	0.20600	0.00002	0.00051	longer	K562	AQR
SE	TMEM43	ENSG00000170876.7	chr3	+	14170354	14170585	14166514	14166705	14170911	14171061	0.15700	0.00003	0.00388	included	K562	HNRNPL
SE	TMEM43	ENSG00000170876.7	chr3	+	14170354	14170585	14166514	14166705	14170911	14171061	0.13000	0.00008	0.03488	included	K562	PPIL4
SE	TMEM43	ENSG00000170876.7	chr3	+	14170354	14170585	14166514	14166705	14170911	14170999	0.05300	0.00044	0.05083	included	HepG2	TAF15
SE	TMEM43	ENSG00000170876.7	chr3	+	14170354	14170585	14166514	14166705	14170911	14171061	0.06400	0.00052	0.09183	included	HepG2	UCHL5

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM43

General Information

Functions

Localization

Domains (AlphaFold: TMEM43)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM43 is not avaliable on ENCORE database.

18 proteins are bound to TMEM43 RNA:

eCLIP assay for TMEM43 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM43 is not available on ENCORE database.

91 RBPs can affect the gene expression of TMEM43 :

The Knockdown/knockout RNA-Seq assay for TMEM43 is not available on ENCORE database.

5 RBPs can affect the splicing of TMEM43 :

The Knockdown/knockout RNA-Seq assay for TMEM43 is not avaliable on ENCORE database.