RP11-468E2.4

General Information

Gene Name       : RP11-468E2.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-468E2.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-468E2.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-468E2.4 RNA is bound by 28 proteins.  







eCLIP assay for RP11-468E2.4 is not avaliable on ENCORE database.





28 proteins are bound to RP11-468E2.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142463127624631378+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.555968.59763HepG2SF3A3
chr142462987024629955+3'-UTR4.104689.34457HepG2CSTF2
chr142463502224635113+3'-UTR,CDS,intron-Proximal3.1481310.85605HepG2U2AF2
chr142463415824634197+3'-UTR,CDS,intron-Distal,intron-Proximal3.540245.90285HepG2PRPF8
chr142463135624631455+3'-UTR,CDS,intron-Distal3.687969.40911HepG2PPIG
chr142463219424632250+3'-UTR,5'-UTR,CDS5.393378.65687HepG2PPIG
chr142463220024632256+3'-UTR,5'-UTR,CDS4.090294.31828HepG2SRSF1
chr142463515324635215+3'-UTR,CDS,intron-Proximal5.4588027.20494HepG2PRPF8
chr142463261724632720+3'-UTR,5'-UTR,CDS,intron-Proximal3.7545110.46300HepG2PPIG
chr142463501224635102+3'-UTR,CDS,intron-Proximal5.0034211.07190HepG2SF3A3
chr142463149524631577+3'-UTR,CDS,intron-Distal,intron-Proximal5.6456923.33766HepG2PRPF8
chr142462988324629935+3'-UTR3.234344.07062HepG2CSTF2T
chr142463377224633856+3'-UTR,CDS,intron-Distal,intron-Proximal4.033765.10493HepG2AQR
chr142463382824633884+3'-UTR,CDS,intron-Distal5.009896.56499HepG2PPIG
chr142463381524633870+3'-UTR,CDS,intron-Distal,intron-Proximal4.218727.77750HepG2PRPF8
chr142463219724632264+3'-UTR,5'-UTR,CDS3.317304.34695HepG2BCLAF1
chr142463266124632710+3'-UTR,5'-UTR,CDS4.134583.38114HepG2GRWD1
chr142463511724635148+3'-UTR,CDS4.313734.38106HepG2PPIG
chr142462053324620587+CDS,intron-Distal3.252468.10388HepG2GRWD1
chr142462702924627113+3'-UTR,CDS,intron-Distal,intron-Proximal3.5113110.85511HepG2SF3A3
chr142462054024620589+CDS,intron-Distal,intron-Proximal5.0487126.80919HepG2PPIG
chr142462737524627470+3'-UTR,CDS,intron-Proximal5.5816432.74187HepG2PRPF8
chr142462958824629616+3'-UTR,CDS4.506473.99014HepG2PABPN1
chr142462119424621230+5'-UTR,CDS,intron-Proximal5.792329.75034HepG2PRPF8
chr142462069324620706+CDS,intron-Distal,intron-Proximal3.047473.54210HepG2EIF3H
chr142462045724620541+CDS,intron-Distal,intron-Proximal3.839064.86000HepG2SRSF9
chr142462909924629169+3'-UTR,CDS,intron-Distal3.8722915.00826HepG2PPIG
chr142462055324620605+CDS,intron-Distal,intron-Proximal3.6589611.53497HepG2BUD13
chr142462462224624637+3'-UTR,CDS,intron-Proximal3.067875.08732HepG2PPIG
chr142462649924626515+CDS,intron-Proximal3.483136.54857HepG2PPIG
chr142462487324624900+3'-UTR,CDS3.7932210.14528HepG2PPIG
chr142462067824620799+CDS,intron-Distal,intron-Proximal3.6367119.39246HepG2BUD13
chr142462050124620578+CDS,intron-Distal,intron-Proximal3.127683.39477K562BUD13
chr142462070624620749+CDS,intron-Distal,intron-Proximal4.035936.66963HepG2EIF3H
chr142462045424620581+CDS,intron-Distal,intron-Proximal3.226934.60395HepG2PRPF4
chr142462913124629165+3'-UTR,CDS,intron-Distal3.920717.38843HepG2BUD13
chr142462114824621200+5'-UTR,CDS3.407929.66368HepG2PPIG
chr142462466824624704+3'-UTR,CDS4.0518810.69967HepG2PPIG
chr142462453724624575+3'-UTR,CDS,intron-Proximal3.572184.63846HepG2PRPF8
chr142462452024624538+3'-UTR,CDS3.596427.36645HepG2PPIG
chr142462720824627267+3'-UTR,CDS,intron-Distal,intron-Proximal4.2529816.82728HepG2PRPF8
chr142462069824620751+CDS,intron-Distal,intron-Proximal4.321024.21159HepG2EIF3D
chr142462058624620637+CDS,intron-Distal,intron-Proximal4.548755.25202HepG2AQR
chr142462943324629478+3'-UTR,CDS,intron-Proximal3.020054.30158HepG2U2AF2
chr142462116124621206+5'-UTR,CDS,intron-Proximal4.4188010.37996HepG2BUD13
chr142462649024626560+3'-UTR,CDS,intron-Proximal3.0125411.29211HepG2BUD13
chr142462110724621148+5'-UTR,CDS4.0381212.68282HepG2PPIG
chr142462063024620727+CDS,intron-Distal,intron-Proximal3.276295.60181HepG2SF3B4
chr142462043124620498+CDS,intron-Distal,intron-Proximal3.519626.11001HepG2SRSF1
chr142462064424620761+CDS,intron-Distal,intron-Proximal3.911198.27668HepG2EFTUD2
chr142462735024627409+3'-UTR,CDS,intron-Proximal3.856636.40291HepG2PABPN1
chr142462736324627406+3'-UTR,CDS,intron-Proximal4.420055.64460HepG2GRWD1
chr142462066024620729+CDS,intron-Distal,intron-Proximal3.183429.66567HepG2U2AF2
chr142462706324627129+3'-UTR,CDS,intron-Distal,intron-Proximal4.698956.03362HepG2AQR
chr142462049824620552+CDS,intron-Distal,intron-Proximal3.000535.63509HepG2SRSF1
chr142462046124620479+CDS,intron-Distal,intron-Proximal3.840107.91657HepG2PPIG
chr142462069224620748+CDS,intron-Distal,intron-Proximal4.6204122.51146HepG2PPIG
chr142462049624620540+CDS,intron-Distal,intron-Proximal4.1109615.06566HepG2PPIG
chr142462719024627218+3'-UTR,CDS,intron-Distal4.415514.69889HepG2GRWD1
chr142462470124624716+3'-UTR,CDS3.107183.80299HepG2GRWD1
chr142462056324620626+CDS,intron-Distal,intron-Proximal4.088367.29769HepG2PRPF8
chr142462470424624720+3'-UTR,CDS4.6068012.18291HepG2PPIG
chr142462081824620862+CDS,intron-Proximal4.0511210.98900HepG2PPIG
chr142462066424620724+CDS,intron-Distal,intron-Proximal3.6597613.55747HepG2PRPF8
chr142462961024629653+3'-UTR,CDS,intron-Proximal4.6917111.57027HepG2PRPF8
chr142462698724627073+intron-Distal,intron-Proximal4.583699.68074HepG2EFTUD2
chr142462695424627043+intron-Distal,intron-Proximal4.574617.49381HepG2PCBP2
chr142463123524631292+intron-Distal,intron-Proximal4.122233.31322HepG2SF3B4
chr142462199524622042+intron-Distal4.166913.47103HepG2LIN28B
chr142462626324626468+intron-Distal,intron-Proximal3.158923.46849HepG2TAF15
chr142462236424622472+intron-Distal3.551507.20478HepG2ILF3
chr142462786024627900+intron-Distal5.421845.00483K562GPKOW
chr142462931224629430+intron-Distal,intron-Proximal4.5861710.73647HepG2AQR
chr142462404324624227+5'-UTR,intron-Distal3.944136.01927K562KHSRP
chr142463428124634318+CDS,intron-Distal4.154764.24431HepG2RBFOX2
chr142462685824626908+intron-Proximal5.0146810.47516HepG2EFTUD2
chr142462726624627331+intron-Proximal4.044296.58230HepG2AQR
chr142462725624627337+intron-Proximal4.910103.82695HepG2RBM5
chr142463416424634229+intron-Distal,intron-Proximal4.623634.09264K562AQR
chr142463521724635305+intron-Proximal3.370986.01692HepG2SF3B4
chr142462477824624805+intron-Proximal4.977144.75571HepG2EFTUD2
chr142463335924633431+intron-Proximal5.6442624.74052K562TIA1
chr142463419724634255+intron-Distal,intron-Proximal3.193266.93483HepG2PRPF8
chr142462428924624363+5'-UTR,intron-Proximal4.9691816.91373HepG2SF3B4
chr142462919024629211+intron-Distal,intron-Proximal3.933095.89850HepG2AQR
chr142462092724620988+intron-Proximal3.863884.23256HepG2EFTUD2
chr142462684724626898+intron-Proximal4.078207.08450HepG2AQR
chr142462702324627103+intron-Distal,intron-Proximal5.031945.86025HepG2SF3B4
chr142463372924633807+CDS,intron-Distal,intron-Proximal4.158643.83824K562BUD13
chr142462428524624354+5'-UTR,intron-Proximal3.9498812.12568HepG2SF3A3
chr142463335324633416+intron-Proximal3.452775.64887HepG2TIA1
chr142462691924626933+intron-Proximal4.085694.61506HepG2EFTUD2
chr142463335724633414+intron-Proximal4.0778610.31271HepG2TIAL1
chr142462684724626895+intron-Proximal4.3901017.48691HepG2PRPF8
chr142462430424624362+5'-UTR,intron-Proximal4.462507.56947K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-468E2.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-468E2.4 is not available on ENCORE database.

  • 70 RBPs can affect the levels of RP11-468E2.4.  








The Knockdown/knockout RNA-Seq assay for RP11-468E2.4 is not available on ENCORE database.





70 RBPs can affect the gene expression of RP11-468E2.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-468E2.4ENSG00000259529.1123.43490224.16060-0.860802.646502.12590HepG2AKAP1
RP11-468E2.4ENSG00000259529.1146.66570325.96410-1.1522012.3645010.89900HepG2AKAP8L
RP11-468E2.4ENSG00000259529.1463.28080293.445800.658706.122405.16460HepG2AUH
RP11-468E2.4ENSG00000259529.1406.17750324.364100.324402.000401.42280HepG2CKAP4
RP11-468E2.4ENSG00000259529.1173.57440364.64130-1.070906.450705.28110HepG2CNOT7
RP11-468E2.4ENSG00000259529.1390.12680248.648700.649704.926803.47740HepG2CPSF7
RP11-468E2.4ENSG00000259529.1185.11630300.06970-0.696902.542801.74070HepG2DDX19B
RP11-468E2.4ENSG00000259529.1302.96920214.732500.496501.890901.36370HepG2DDX3X
RP11-468E2.4ENSG00000259529.1228.72520310.41730-0.440602.384901.74900HepG2DKC1
RP11-468E2.4ENSG00000259529.1120.65120188.73850-0.645502.780502.12720HepG2DNAJC2
RP11-468E2.4ENSG00000259529.1267.38530166.452900.683703.179901.98510HepG2AGO1
RP11-468E2.4ENSG00000259529.1377.55300177.325801.090208.599607.59040HepG2EIF2S1
RP11-468E2.4ENSG00000259529.1298.60190132.597401.171103.178502.21670HepG2EIF3D
RP11-468E2.4ENSG00000259529.1394.46600195.970101.009205.224004.34720HepG2EIF4A3
RP11-468E2.4ENSG00000259529.1541.04260336.947500.683106.877806.00080HepG2ETF1
RP11-468E2.4ENSG00000259529.1514.30650304.702600.755105.427904.38140HepG2FIP1L1
RP11-468E2.4ENSG00000259529.1502.20500184.809601.442107.571505.89730HepG2FTO
RP11-468E2.4ENSG00000259529.1271.38180136.715600.989006.664905.47490HepG2FUBP3
RP11-468E2.4ENSG00000259529.1301.92730194.709300.632803.190802.23300HepG2G3BP2
RP11-468E2.4ENSG00000259529.1306.58620209.312600.550502.350601.41430HepG2GNB2L1
RP11-468E2.4ENSG00000259529.1311.08420209.122000.572902.609401.98530HepG2GPKOW
RP11-468E2.4ENSG00000259529.1166.16200251.75990-0.599503.444002.69970HepG2HNRNPL
RP11-468E2.4ENSG00000259529.199.08490212.39050-1.100008.131207.13110HepG2HNRNPU
RP11-468E2.4ENSG00000259529.1449.98800186.439101.2711012.8105011.47910HepG2IGF2BP2
RP11-468E2.4ENSG00000259529.1325.64650187.521500.796203.367902.24810HepG2KHSRP
RP11-468E2.4ENSG00000259529.1210.36900296.58280-0.495503.152002.06560HepG2KIF1C
RP11-468E2.4ENSG00000259529.1300.55510197.782000.603602.975102.29630HepG2MAGOH
RP11-468E2.4ENSG00000259529.1360.65810246.764100.547402.011701.31710HepG2MSI2
RP11-468E2.4ENSG00000259529.1310.55790203.553600.609402.461101.55090HepG2MTPAP
RP11-468E2.4ENSG00000259529.1474.53260203.577601.2208011.6546010.39690HepG2NCBP2
RP11-468E2.4ENSG00000259529.1173.41120274.06710-0.660303.916103.00880HepG2NOL12
RP11-468E2.4ENSG00000259529.1344.84550176.962800.962406.966205.81400HepG2NSUN2
RP11-468E2.4ENSG00000259529.1532.16590333.256700.675103.261002.29290HepG2PABPC1
RP11-468E2.4ENSG00000259529.1339.45610181.306800.904706.262405.18850HepG2PABPC4
RP11-468E2.4ENSG00000259529.1401.43930171.864501.223806.327205.46740HepG2PCBP1
RP11-468E2.4ENSG00000259529.1451.50620227.053600.991606.978305.39810HepG2PCBP2
RP11-468E2.4ENSG00000259529.1352.51840513.49990-0.542703.183301.30250HepG2PPIG
RP11-468E2.4ENSG00000259529.1393.18550202.488900.957307.561106.30360HepG2PRPF8
RP11-468E2.4ENSG00000259529.1135.11920330.48430-1.2903015.6476014.39310HepG2PUS1
RP11-468E2.4ENSG00000259529.1314.44760194.615500.692102.078801.59570HepG2NELFE
RP11-468E2.4ENSG00000259529.1327.03540181.217200.851605.002504.20420HepG2RECQL
RP11-468E2.4ENSG00000259529.1140.06510232.85490-0.733303.872802.58450HepG2RPS5
RP11-468E2.4ENSG00000259529.1282.93960197.529700.518302.248701.60970HepG2SF3B1
RP11-468E2.4ENSG00000259529.1376.24390182.091501.046909.669008.66310HepG2SF3B4
RP11-468E2.4ENSG00000259529.1701.65380318.066301.1413011.9309011.08430HepG2SRFBP1
RP11-468E2.4ENSG00000259529.1529.87210154.594201.7771028.3694026.95920HepG2SRSF9
RP11-468E2.4ENSG00000259529.1279.30760194.541100.521702.365401.68800HepG2TARDBP
RP11-468E2.4ENSG00000259529.1268.67630156.967400.775304.856803.76050HepG2TIA1
RP11-468E2.4ENSG00000259529.1387.61380206.328000.909608.551707.76040HepG2TIAL1
RP11-468E2.4ENSG00000259529.1378.13510255.614500.564803.682502.65900HepG2TUFM
RP11-468E2.4ENSG00000259529.1506.60350260.743100.958109.353808.18780HepG2U2AF1
RP11-468E2.4ENSG00000259529.1449.35190270.573400.731704.480803.39780HepG2UBE2L3
RP11-468E2.4ENSG00000259529.1228.18780373.59960-0.711302.738902.14480HepG2UTP3
RP11-468E2.4ENSG00000259529.1117.07550247.40260-1.079405.906305.12630K562AGGF1
RP11-468E2.4ENSG00000259529.1176.09430271.86030-0.626503.345302.24210K562AKAP8
RP11-468E2.4ENSG00000259529.1150.77550257.43420-0.771804.338903.51580K562AKAP8L
RP11-468E2.4ENSG00000259529.1244.83660149.206100.714403.243102.61730K562AQR
RP11-468E2.4ENSG00000259529.1184.31270270.11150-0.551403.023302.06970K562ATP5C1
RP11-468E2.4ENSG00000259529.1205.53120295.65780-0.524602.854801.65560K562CCDC124
RP11-468E2.4ENSG00000259529.1136.34650277.01410-1.022708.246406.58680K562DKC1
RP11-468E2.4ENSG00000259529.1163.4744084.468100.952504.195903.05370K562EFTUD2
RP11-468E2.4ENSG00000259529.1166.9203090.412000.884503.399802.24330K562EIF3D
RP11-468E2.4ENSG00000259529.1199.2005083.488201.254507.295706.37080K562HNRNPC
RP11-468E2.4ENSG00000259529.187.10950143.52690-0.720402.746201.69700K562HNRNPL
RP11-468E2.4ENSG00000259529.1222.12250115.097700.948403.771002.08660K562ILF2
RP11-468E2.4ENSG00000259529.1203.48150273.20000-0.425102.174101.45400K562KIF1C
RP11-468E2.4ENSG00000259529.1115.3714074.216500.636402.085401.35020K562MAGOH
RP11-468E2.4ENSG00000259529.1153.23750261.52120-0.771202.310301.35730K562MAK16
RP11-468E2.4ENSG00000259529.1173.75490306.05330-0.816706.079704.63130K562MBNL1
RP11-468E2.4ENSG00000259529.1224.12720121.238900.886403.742002.28200K562PABPC1
RP11-468E2.4ENSG00000259529.1203.5533066.053201.6236011.677509.58640K562PCBP2
RP11-468E2.4ENSG00000259529.199.37390163.26790-0.716302.955602.12670K562POLR2G
RP11-468E2.4ENSG00000259529.1281.99670166.702100.758304.552603.50900K562PUF60
RP11-468E2.4ENSG00000259529.1134.93300255.30010-0.920004.978104.27690K562PUS1
RP11-468E2.4ENSG00000259529.1141.50020248.75480-0.813904.858804.09370K562RBM15
RP11-468E2.4ENSG00000259529.1116.1712069.190200.747502.587401.77590K562RBM22
RP11-468E2.4ENSG00000259529.1151.8410083.707700.859002.860402.02920K562RPS19
RP11-468E2.4ENSG00000259529.1106.49380163.75210-0.620702.482401.70670K562SYNCRIP
RP11-468E2.4ENSG00000259529.1143.3129071.546401.002104.520903.61140K562TARDBP
RP11-468E2.4ENSG00000259529.1284.13170187.923600.596303.302501.75560K562UBE2L3
RP11-468E2.4ENSG00000259529.1147.39920258.85170-0.812403.151601.73830K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-468E2.4 is not available on ENCORE database.





6 RBPs can affect the splicing of RP11-468E2.4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-468E2.4ENSG00000259529.1chr14+246290722462916924627350246274082462944724629616-0.065000.000910.05602excludedHepG2RBM22
SERP11-468E2.4ENSG00000259529.1chr14+246290722462916924627350246274082462944724629616-0.145000.000450.01041excludedHepG2U2AF1
SERP11-468E2.4ENSG00000259529.1chr14+246290722462916924627350246274082462944724629616-0.244000.006240.06331excludedHepG2U2AF2
SERP11-468E2.4ENSG00000259529.1chr14+246290722462916924627375246274082462944724629616-0.073000.000960.05489excludedHepG2NCBP2
A3SSRP11-468E2.4ENSG00000259529.1chr14+2462704024627220246271062462722024626728246268470.150000.000020.00105longerHepG2U2AF2
A3SSRP11-468E2.4ENSG00000259529.1chr14+2462904624629169246290722462916924627350246274080.079000.006040.03412longerK562AQR
A3SSRP11-468E2.4ENSG00000259529.1chr14+2462670524626847246267282462684724626498246266130.155000.000230.00187longerK562AQR
A3SSRP11-468E2.4ENSG00000259529.1chr14+2462704024627220246271062462722024626728246268470.115000.000000.00002longerHepG2U2AF1
MXERP11-468E2.4ENSG00000259529.1chr14+24633822246341642463505524635171246332712463334324635330246366110.455000.001380.041121includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-468E2.4 is not avaliable on ENCORE database.