RAB5A

General Information

Gene Name       : RAB5A
Gene ID             : ENSG00000144566.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB5A)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB5AENSG00000144566.1029.2026.7227.96ENCSR000AEF
HepG2RAB5AENSG00000144566.1013.4526.4819.96ENCSR985KAT
K562RAB5AENSG00000144566.1037.9339.3038.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB5A is not avaliable on ENCORE database.



Proteins bound to RNA

  • RAB5A RNA is bound by 25 proteins.  







eCLIP assay for RAB5A is not avaliable on ENCORE database.





25 proteins are bound to RAB5A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr32002617020026235+3'-UTR4.030286.00093K562FAM120A
chr32001705920017135+3'-UTR,CDS,intron-Proximal3.962654.39974K562GPKOW
chr32002617320026244+3'-UTR3.141695.45410K562UPF1
chr32002591420025964+3'-UTR3.302665.09741K562UPF1
chr32002617020026243+3'-UTR3.1946511.14206K562PUM2
chr32001984120019877+3'-UTR,CDS3.117363.12941K562UCHL5
chr32001982920019904+3'-UTR,CDS,intron-Proximal3.791075.06180HepG2BCLAF1
chr32002606520026144+3'-UTR4.363178.51603K562UPF1
chr32002642220026517+3'-UTR3.620767.37565K562IGF2BP1
chr32002631120026410+3'-UTR4.1141710.90921K562IGF2BP1
chr32001708220017159+3'-UTR,CDS,intron-Proximal3.989483.58873K562U2AF1
chr32002609120026137+3'-UTR4.140113.27203K562IGF2BP2
chr31999238319992428+3'-UTR,5'-UTR,CDS4.280863.15006K562RBM15
chr32001980120019847+3'-UTR,CDS,intron-Proximal4.010013.01429K562IGF2BP1
chr32002619620026259+3'-UTR4.715607.05886K562IGF2BP1
chr32001713320017183+3'-UTR,CDS,intron-Proximal3.127656.14017K562YBX3
chr32001709220017140+3'-UTR,CDS,intron-Proximal4.108447.93461K562BUD13
chr32001219120012253+3'-UTR,intron-Distal,intron-Proximal4.889166.28383K562KHSRP
chr32001707320017133+3'-UTR,CDS,intron-Proximal4.060864.98250K562AQR
chr31998876619988838+5'-UTR3.039303.59602K562UCHL5
chr31998876219988823+5'-UTR3.244938.94447K562FTO
chr31998873219988762+5'-UTR3.363689.37479K562FTO
chr31998879219988858+5'-UTR4.094193.84437HepG2PRPF4
chr31998886619988929+5'-UTR4.314655.88953K562DDX3X
chr31998892819988991+5'-UTR3.111006.82147K562GEMIN5
chr31998885819988934+5'-UTR3.377513.46130HepG2PRPF4
chr32000611720006176+intron-Distal4.7058811.50600HepG2QKI
chr31999270819992729+intron-Distal4.528888.34041K562KHSRP
chr32000612620006177+intron-Distal3.230345.61499K562QKI
chr31999354719993601+intron-Distal4.443083.84404HepG2HNRNPC
chr32000604820006117+intron-Distal5.4263210.85098HepG2QKI
chr32001999520020072+intron-Distal4.715656.96521K562TARDBP
chr32001501020015061+intron-Distal3.747893.91876HepG2U2AF2
chr31999320319993306+intron-Distal3.332015.21200K562HNRNPC
chr32001730920017382+intron-Distal,intron-Proximal3.515953.76553K562PRPF8
chr32001507520015192+intron-Distal4.7952311.16049K562KHSRP
chr32002380420023853+intron-Distal5.282919.71026K562TARDBP
chr32001522220015256+intron-Distal3.335985.57010K562KHSRP
chr32000603220006126+intron-Distal4.6961014.82176K562QKI
chr32000920220009283+intron-Distal4.322324.40847HepG2PTBP1
chr32001422420014275+intron-Distal4.9033013.55501K562KHSRP
chr32001417020014208+intron-Distal4.4297414.01968K562KHSRP
chr32001530420015356+intron-Distal3.971553.66668K562KHSRP
chr32000390420003954+intron-Distal4.926326.91139HepG2QKI
chr32000563320005721+intron-Distal3.327804.72639K562KHSRP
chr31999267819992708+intron-Distal5.007756.27552K562KHSRP
chr31999272919992765+intron-Distal4.1404712.03035K562KHSRP
chr32001405620014170+intron-Distal3.207849.92668K562KHSRP
chr32000918920009377+intron-Distal3.1417111.22494K562PTBP1
chr32001420820014224+intron-Distal4.9833814.19617K562KHSRP
chr32002405120024109+intron-Distal3.342603.48382K562TIA1
chr32001519220015222+intron-Distal3.035325.23331K562KHSRP
chr32002000120020086+intron-Distal3.073689.61511K562PRPF8
chr32001225320012309+intron-Distal,intron-Proximal3.140154.14287K562KHSRP
chr32002398720024056+intron-Distal3.931213.06676K562U2AF2
chr32002385320023926+intron-Distal5.4289319.06771K562TARDBP
chr31999261619992690+intron-Distal,intron-Proximal3.013723.40058K562PRPF8
chr32001501420015064+intron-Distal3.832016.12211K562U2AF2
chr32001427520014351+intron-Distal5.5991714.04546K562KHSRP
chr32001501320015060+intron-Distal3.161813.40427K562U2AF1
chr31999358219993650+intron-Distal3.039625.09741K562UPF1
chr31999262619992707+intron-Distal,intron-Proximal3.365064.28919HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB5A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB5A is not available on ENCORE database.

  • 70 RBPs can affect the levels of RAB5A.  








The Knockdown/knockout RNA-Seq assay for RAB5A is not available on ENCORE database.





70 RBPs can affect the gene expression of RAB5A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB5AENSG00000144566.6515.88200752.33070-0.544304.354303.13550HepG2ADAR
RAB5AENSG00000144566.61278.078101070.765400.255202.210601.58480HepG2AUH
RAB5AENSG00000144566.61486.680601046.464800.506506.393905.28350HepG2CALR
RAB5AENSG00000144566.6783.01060604.315200.373602.528101.87680HepG2DDX21
RAB5AENSG00000144566.6635.66920483.676100.394102.764101.37610HepG2DDX28
RAB5AENSG00000144566.61382.674301007.676300.456303.473402.78230HepG2DDX3X
RAB5AENSG00000144566.61645.923001148.743100.518702.460101.53880HepG2DDX59
RAB5AENSG00000144566.61079.74290832.133200.375702.417501.86170HepG2EIF2S1
RAB5AENSG00000144566.61210.12620895.412100.434402.339101.70410HepG2EIF4B
RAB5AENSG00000144566.61736.968601229.299400.498609.322208.32660HepG2ETF1
RAB5AENSG00000144566.6944.82510748.435300.336102.551801.75010HepG2EWSR1
RAB5AENSG00000144566.6809.56470575.881400.491304.253602.87960HepG2FASTKD2
RAB5AENSG00000144566.6759.50220603.103200.332502.224501.51280HepG2FUBP3
RAB5AENSG00000144566.61236.43870992.692900.316702.814401.87430HepG2HNRNPA2B1
RAB5AENSG00000144566.6646.42550850.71810-0.396202.802202.10490HepG2HNRNPC
RAB5AENSG00000144566.61435.410901094.397400.391202.653702.03510HepG2HNRNPLL
RAB5AENSG00000144566.6622.94790845.09360-0.440005.137604.33240HepG2HNRNPU
RAB5AENSG00000144566.6733.31060933.44050-0.348101.862601.33970HepG2MATR3
RAB5AENSG00000144566.6617.38910753.75560-0.287902.144701.48760HepG2PPIL4
RAB5AENSG00000144566.6653.68720492.613500.408002.823702.00610HepG2PRPF8
RAB5AENSG00000144566.61561.764101027.484100.6040010.474309.60950HepG2RBM22
RAB5AENSG00000144566.61233.08710844.634200.545806.528805.53300HepG2RBM25
RAB5AENSG00000144566.6647.45030487.324300.409802.657601.88550HepG2RRP9
RAB5AENSG00000144566.61511.981601129.161800.421102.533101.88800HepG2SF3A3
RAB5AENSG00000144566.6648.113101083.27100-0.741108.773207.58590HepG2SF3B1
RAB5AENSG00000144566.62310.661401160.535800.9934039.7121038.38990HepG2SRFBP1
RAB5AENSG00000144566.61129.97310933.836900.274902.810902.33480HepG2SRSF1
RAB5AENSG00000144566.6918.22790635.415800.531104.474503.64580HepG2SUPV3L1
RAB5AENSG00000144566.61023.93060771.247900.408804.018203.01680HepG2TIA1
RAB5AENSG00000144566.6679.33110821.15980-0.273501.869901.44130HepG2TIAL1
RAB5AENSG00000144566.61224.70210937.159900.386002.904902.26200HepG2U2AF1
RAB5AENSG00000144566.6771.38590648.368100.250501.944801.36660HepG2ZC3H8
RAB5AENSG00000144566.61290.391401101.341800.228402.539302.00930HepG2ZNF622
RAB5AENSG00000144566.61670.909101316.830500.343502.673901.51450K562AARS
RAB5AENSG00000144566.63463.324502597.656900.414807.813506.92870K562AGGF1
RAB5AENSG00000144566.63653.067602854.559200.355702.742301.76610K562AKAP8
RAB5AENSG00000144566.63602.112002703.011000.414204.998204.10900K562AKAP8L
RAB5AENSG00000144566.61548.067802493.60720-0.6878012.7130010.11500K562APOBEC3C
RAB5AENSG00000144566.63460.870902175.854600.6695010.708009.66540K562AQR
RAB5AENSG00000144566.63686.222902836.168200.378106.342004.88930K562ATP5C1
RAB5AENSG00000144566.62892.226801829.828200.660408.902607.28150K562BOP1
RAB5AENSG00000144566.63877.558603104.241100.320803.992402.53990K562CCDC124
RAB5AENSG00000144566.64681.572303475.291800.429806.519605.03670K562CELF1
RAB5AENSG00000144566.63771.548402738.486000.4617010.647409.46360K562DDX47
RAB5AENSG00000144566.6963.16120731.722200.396402.909501.52680K562DNAJC21
RAB5AENSG00000144566.61691.943701440.324100.232202.252101.59350K562EIF2S2
RAB5AENSG00000144566.61012.13170692.143500.548202.818201.80420K562EIF3A
RAB5AENSG00000144566.61467.852101046.275300.488303.657802.45290K562EIF3D
RAB5AENSG00000144566.61808.163701403.085000.365803.235101.49950K562FASTKD2
RAB5AENSG00000144566.62477.432001979.683800.323502.677101.83670K562FMR1
RAB5AENSG00000144566.61541.408701159.436800.410704.365802.63490K562FUS
RAB5AENSG00000144566.63174.512002016.045100.654903.855702.98930K562G3BP2
RAB5AENSG00000144566.62291.088401857.506400.302602.548901.78500K562GPKOW
RAB5AENSG00000144566.63710.536202333.367700.669103.022601.73090K562HNRNPA2B1
RAB5AENSG00000144566.61158.528901441.31390-0.315102.510401.93900K562HNRNPC
RAB5AENSG00000144566.64017.253502868.460800.485805.702604.42150K562KIF1C
RAB5AENSG00000144566.62409.962601586.190800.603305.160603.83270K562KRR1
RAB5AENSG00000144566.63398.095002745.911600.307302.861801.76490K562MAK16
RAB5AENSG00000144566.61399.570202005.32880-0.518904.230103.06840K562MATR3
RAB5AENSG00000144566.63306.675102252.381500.553802.783101.89640K562NAA15
RAB5AENSG00000144566.62352.648401730.799500.442706.267104.44820K562NCBP2
RAB5AENSG00000144566.64225.416803091.407100.450703.765802.00730K562NOL12
RAB5AENSG00000144566.61406.24730950.829000.564505.796604.70830K562PRPF8
RAB5AENSG00000144566.64617.384103083.398900.582507.851306.46770K562PUF60
RAB5AENSG00000144566.63713.883202680.422200.470405.277704.55900K562PUS1
RAB5AENSG00000144566.63391.649002611.852400.376805.988305.14220K562RBM15
RAB5AENSG00000144566.61776.78270968.596300.875209.758208.20820K562RPS19
RAB5AENSG00000144566.61319.28450972.259200.440202.671401.36610K562RRP9
RAB5AENSG00000144566.62586.144001944.051500.411607.041705.78490K562SF3A3
RAB5AENSG00000144566.61278.900001694.65610-0.406104.176702.84180K562SRSF4
RAB5AENSG00000144566.62920.651902065.300100.499804.902903.15730K562STAU1
RAB5AENSG00000144566.61360.84660920.733100.563505.089103.67500K562SUPV3L1
RAB5AENSG00000144566.62190.952901829.467600.260003.156501.79490K562TROVE2
RAB5AENSG00000144566.62638.987801953.225300.434002.286001.30470K562U2AF1
RAB5AENSG00000144566.62899.232002017.576400.522908.567607.14090K562U2AF2
RAB5AENSG00000144566.62543.010902088.962600.283704.245503.37420K562UPF1
RAB5AENSG00000144566.62501.271401858.773400.428209.438707.97420K562WDR43
RAB5AENSG00000144566.63140.780502578.458700.284502.680501.41580K562WRN
RAB5AENSG00000144566.64251.765102521.765500.753503.530101.65210K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB5A is not available on ENCORE database.





2 RBPs can affect the splicing of RAB5A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB5AENSG00000144566.6chr3+2001203920012209199922971999255320017092200172440.080000.000620.01374includedHepG2U2AF1
SERAB5AENSG00000144566.6chr3+2001203920012209199922971999255320017092200172440.120000.000000.00000includedK562AQR
SERAB5AENSG00000144566.6chr3+2001203920012209199922971999255320017092200172440.052000.000000.00006includedK562U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB5A is not avaliable on ENCORE database.