RAB40C

General Information

Gene Name       : RAB40C
Gene ID             : ENSG00000197562.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB40C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB40CENSG00000197562.90.001.370.69ENCSR000AEF
HepG2RAB40CENSG00000197562.911.552.116.83ENCSR985KAT
K562RAB40CENSG00000197562.99.603.756.67ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB40C is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB40C RNA is bound by 23 proteins.  







eCLIP assay for RAB40C is not avaliable on ENCORE database.





23 proteins are bound to RAB40C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr16678095678130+3'-UTR4.378663.31330K562UPF1
chr16675502675569+3'-UTR,CDS,intron-Proximal3.238343.18246K562PRPF8
chr16667106667212+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.740757.19196HepG2SF3B4
chr16677949678003+3'-UTR5.4478312.97476K562PUM2
chr16677944678047+3'-UTR5.127398.28148HepG2UPF1
chr16678161678226+3'-UTR4.910415.94928K562UPF1
chr16667115667216+3'-UTR,5'-UTR,CDS,intron-Proximal4.699468.69408K562SF3B4
chr16677951678000+3'-UTR6.1335112.83212K562UPF1
chr16678084678153+3'-UTR4.191533.92497HepG2UPF1
chr16678021678073+3'-UTR4.039626.36782K562UPF1
chr16678922679059+3'-UTR3.175365.33050K562UPF1
chr16640089640244+5'-UTR,intron-Distal,intron-Proximal3.456434.52274HepG2NCBP2
chr16640262640315+5'-UTR,CDS4.5170412.05948HepG2CSTF2T
chr16640228640312+5'-UTR,CDS,intron-Proximal4.367053.32488HepG2DDX3X
chr16639750639769+5'-UTR,intron-Distal,intron-Proximal4.166084.36133HepG2CSTF2T
chr16639670639705+5'-UTR,intron-Distal4.347174.28089HepG2FAM120A
chr16640071640136+5'-UTR,intron-Distal,intron-Proximal4.5435210.54254HepG2CSTF2T
chr16640136640262+5'-UTR,intron-Distal,intron-Proximal5.2558928.98194HepG2CSTF2T
chr16640061640125+5'-UTR,intron-Distal,intron-Proximal4.7001312.02917HepG2FAM120A
chr16639638639706+5'-UTR,intron-Distal,intron-Proximal4.525499.56617HepG2CSTF2T
chr16640125640209+5'-UTR,intron-Distal,intron-Proximal3.3323010.33127HepG2FAM120A
chr16640093640258+5'-UTR,intron-Distal,intron-Proximal4.8698213.65334HepG2GRSF1
chr16640431640449+CDS,intron-Proximal4.332274.59919HepG2AQR
chr16640345640418+CDS4.7429811.80524HepG2CSTF2T
chr16640389640477+CDS,intron-Proximal4.1561412.79935HepG2PRPF8
chr16649457649521+intron-Distal3.260174.94600K562RBM15
chr16660005660056+intron-Distal4.612494.46290K562EWSR1
chr16640815640976+intron-Distal5.5106411.85679HepG2PRPF4
chr16641103641196+intron-Distal4.2717512.71809K562EWSR1
chr16641371641425+intron-Distal3.445219.44808HepG2CSTF2T
chr16644333644384+intron-Distal3.989833.80314K562CSTF2T
chr16642455642551+intron-Distal5.9572512.82111K562EWSR1
chr16640870640959+intron-Distal4.145748.35130K562FUS
chr16643932644023+intron-Distal3.317365.91153HepG2CSTF2T
chr16641078641165+intron-Distal3.650555.11725K562DROSHA
chr16640792640870+intron-Distal3.769966.80844K562FUS
chr16669546669652+intron-Distal3.901483.34442K562FUS
chr16649251649312+intron-Distal4.956116.89039K562RBM15
chr16641351641418+intron-Distal3.853935.34749HepG2FAM120A
chr16650109650211+intron-Distal3.858664.49353K562SLTM
chr16674218674290+intron-Distal4.047503.76710K562NONO
chr16650039650189+intron-Distal5.174167.23707K562RBM15
chr16642432642524+intron-Distal3.941393.79154K562FUS
chr16641077641229+intron-Distal4.2041313.26873K562CSTF2T
chr16655703655780+intron-Distal3.727315.00766K562EWSR1
chr16669887669967+intron-Distal3.232405.91153HepG2CSTF2T
chr16640874640972+intron-Distal3.291914.85522K562SLTM
chr16640863640989+intron-Distal6.0195118.01976K562CSTF2T
chr16671774671827+intron-Distal4.283014.14056K562EWSR1
chr16669761669814+intron-Distal5.154986.42318K562EIF4G2
chr16641276641407+intron-Distal3.859587.78087K562FUS
chr16659341659410+intron-Distal3.805764.96047K562SLTM
chr16641258641276+intron-Distal4.615313.86024K562EWSR1
chr16669891669964+intron-Distal3.814686.09610K562EWSR1
chr16640845640894+intron-Distal4.351407.13447HepG2FAM120A
chr16671198671252+intron-Distal3.943993.87340HepG2CSTF2T
chr16640019640061+intron-Distal5.058928.11443HepG2FAM120A
chr16669472669509+intron-Distal4.050493.02711K562EWSR1
chr16655625655703+intron-Distal3.153723.36199K562EWSR1
chr16648832648919+intron-Distal4.055169.53806K562SLTM
chr16642434642533+intron-Distal3.380194.70352K562SLTM
chr16671657671743+intron-Distal3.668263.93915K562EWSR1
chr16640696640760+intron-Distal4.4257716.57850HepG2CSTF2T
chr16640651640723+intron-Distal3.860077.14301HepG2FAM120A
chr16639869639973+intron-Distal4.8719913.19228HepG2FAM120A
chr16640664640767+intron-Distal3.634227.52346K562EWSR1
chr16669567669661+intron-Distal4.247833.87340HepG2CSTF2T
chr16640849640975+intron-Distal4.7971310.40873K562GTF2F1
chr16644677644750+intron-Distal3.531983.30761K562DDX52
chr16643916643976+intron-Distal4.729726.41528K562EWSR1
chr16663876663931+intron-Distal3.778323.01428K562UCHL5
chr16641229641308+intron-Distal4.241258.46178K562CSTF2T
chr16641200641248+intron-Distal4.348434.45771K562DHX30
chr16640735640771+intron-Distal3.838644.33898HepG2FAM120A
chr16661308661367+intron-Distal4.549636.13283K562NONO
chr16649176649223+intron-Distal3.144083.34231K562RBM15
chr16640664640731+intron-Distal3.247863.92090HepG2GRSF1
chr16669575669637+intron-Distal4.129613.53896K562NONO
chr16641358641431+intron-Distal3.983967.39596K562CSTF2T
chr16669708669808+intron-Distal3.782823.55447K562FUS
chr16645096645166+intron-Distal3.345033.15535K562EWSR1
chr16669891669943+intron-Distal3.136893.74429K562EIF4G2
chr16642188642224+intron-Distal4.723684.14056K562EWSR1
chr16659839659915+intron-Distal3.989876.09581K562SLTM
chr16669898669993+intron-Distal4.544644.96496K562NONO
chr16647230647290+intron-Distal3.119984.34872K562SLTM
chr16661075661143+intron-Distal3.163673.48399HepG2CSTF2T
chr16644265644335+intron-Distal4.882437.73240K562NONO
chr16640676640759+intron-Distal4.224885.53111K562FUS
chr16640655640763+intron-Distal4.4649510.30731K562CSTF2T
chr16641097641151+intron-Distal3.986024.16295K562FUS
chr16661221661265+intron-Distal4.112493.58113K562EWSR1
chr16660356660419+intron-Distal3.396434.22628K562EWSR1
chr16640870640987+intron-Distal4.8436614.97053K562EWSR1
chr16640868640980+intron-Distal4.6818716.11034HepG2CSTF2T
chr16659329659393+intron-Distal4.358105.11753HepG2CSTF2T
chr16655780655834+intron-Distal4.195253.02711K562EWSR1
chr16640894640979+intron-Distal3.733669.30999HepG2FAM120A
chr16641967642058+intron-Distal3.598105.55220K562CSTF2T
chr16669563669633+intron-Distal4.811476.12846K562EWSR1
chr16642348642430+intron-Distal3.769963.35564K562FUS
chr16671945672035+intron-Distal4.598204.98766K562EWSR1
chr16655616655693+intron-Distal3.110263.14365K562NONO
chr16670517670584+intron-Distal3.848483.06347K562NONO
chr16660004660067+intron-Distal3.583433.12651K562SAFB2
chr16670854670914+intron-Distal4.377963.94682K562EIF4G2
chr16647107647185+intron-Distal3.849495.33662K562SLTM
chr16661240661337+intron-Distal3.240143.31097K562SLTM
chr16640923640992+intron-Distal3.751366.85973K562DROSHA
chr16642442642524+intron-Distal3.842907.80345HepG2CSTF2T
chr16647134647265+intron-Distal4.864396.14086K562GTF2F1
chr16640837640911+intron-Distal4.010536.59266K562DROSHA
chr16642308642396+intron-Distal3.072845.05878HepG2CSTF2T
chr16642932643035+intron-Distal3.812933.15856K562FUS
chr16641315641429+intron-Distal4.7189517.24223K562EWSR1
chr16669409669448+intron-Distal4.215153.30336K562EWSR1
chr16644461644506+intron-Distal4.170414.23759K562NONO
chr16639927639945+intron-Distal3.472844.45183HepG2CSTF2T
chr16660005660059+intron-Distal3.166083.69530HepG2CSTF2T
chr16659982660055+intron-Distal4.158774.54084K562FUS
chr16642410642444+intron-Distal3.893093.43867K562CSTF2T
chr16649312649408+intron-Distal5.4434711.44035K562RBM15
chr16656613656730+intron-Distal4.553185.42636K562NONO
chr16649164649245+intron-Distal4.113758.39538K562SLTM
chr16641151641276+intron-Distal4.926569.37522K562FUS
chr16647123647266+intron-Distal3.072003.68924HepG2PRPF4
chr16669395669459+intron-Distal5.403738.53131K562EIF4G2
chr16671523671563+intron-Distal3.869213.02711K562EWSR1
chr16648792648888+intron-Distal4.463305.14565K562UCHL5
chr16640586640696+intron-Distal4.9147824.02902HepG2CSTF2T
chr16642478642545+intron-Distal4.859677.09445K562NONO
chr16659791659890+intron-Distal3.288054.30514K562FUS
chr16671699671757+intron-Distal4.421665.34533K562NONO
chr16642211642270+intron-Distal4.524325.86222K562NONO
chr16640449640471+intron-Proximal4.417244.62947HepG2AQR
chr16640449640513+intron-Proximal5.3649810.73431HepG2CSTF2T
chr16675338675429+intron-Proximal4.820453.82734K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB40C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB40C is not available on ENCORE database.

  • 88 RBPs can affect the levels of RAB40C.  








The Knockdown/knockout RNA-Seq assay for RAB40C is not available on ENCORE database.





88 RBPs can affect the gene expression of RAB40C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB40CENSG00000197562.5354.73390263.410300.429302.817502.14730HepG2CKAP4
RAB40CENSG00000197562.5227.72010134.585900.758604.870603.92840HepG2DAZAP1
RAB40CENSG00000197562.5350.20320252.081000.474202.884302.19310HepG2DKC1
RAB40CENSG00000197562.5148.0213082.521200.842903.808702.99350HepG2DNAJC21
RAB40CENSG00000197562.5145.1761081.808500.827402.375301.76210HepG2DNAJC2
RAB40CENSG00000197562.5426.57690234.827200.861106.295705.42030HepG2EIF2S1
RAB40CENSG00000197562.5380.94770259.454300.554002.690902.06070HepG2EIF4A3
RAB40CENSG00000197562.5251.28490127.191500.982206.248605.04810HepG2EIF4G2
RAB40CENSG00000197562.5195.0991092.165901.081805.419203.42750HepG2HNRNPA0
RAB40CENSG00000197562.5161.3906083.311900.953902.312401.71730HepG2HNRNPA1
RAB40CENSG00000197562.5246.72670159.668900.627703.580302.77300HepG2HNRNPF
RAB40CENSG00000197562.5191.33720122.597700.642103.105702.39480HepG2HNRNPL
RAB40CENSG00000197562.5153.0196092.061300.732903.383802.71930HepG2HNRNPU
RAB40CENSG00000197562.5252.68140157.227300.684403.847303.00420HepG2IGF2BP1
RAB40CENSG00000197562.5370.16890246.877900.584303.118502.40680HepG2IGF2BP2
RAB40CENSG00000197562.5189.17050103.839100.865203.894302.43770HepG2KHDRBS1
RAB40CENSG00000197562.5582.93480253.474501.2014011.225009.54530HepG2LARP4
RAB40CENSG00000197562.5370.65300262.044400.500202.424601.80980HepG2MAGOH
RAB40CENSG00000197562.5448.51800263.482800.767404.843604.02720HepG2MATR3
RAB40CENSG00000197562.5389.13600269.666300.529002.625702.00770HepG2NCBP2
RAB40CENSG00000197562.5264.80590133.455100.988503.716002.82950HepG2NOL12
RAB40CENSG00000197562.5164.8581073.185201.171504.744702.89000HepG2NOLC1
RAB40CENSG00000197562.5257.98570122.588901.073403.949802.62580HepG2NONO
RAB40CENSG00000197562.5277.8766099.511701.481409.168007.50620HepG2PABPC1
RAB40CENSG00000197562.5179.1511082.110401.125407.167806.01940HepG2PPIL4
RAB40CENSG00000197562.5304.08350127.394301.2551011.005209.92280HepG2PUF60
RAB40CENSG00000197562.5298.95830135.234401.1444012.1083011.05240HepG2PUM1
RAB40CENSG00000197562.5269.79830135.135800.997402.182001.58300HepG2PUM2
RAB40CENSG00000197562.5201.84410107.174100.913203.767102.59880HepG2RBM27
RAB40CENSG00000197562.5202.0826087.030701.215205.851704.30390HepG2RCC2
RAB40CENSG00000197562.5223.4475098.831601.176806.365005.18210HepG2RPS2
RAB40CENSG00000197562.5222.86760109.415301.026305.245904.14130HepG2RPS3A
RAB40CENSG00000197562.5175.49750100.897800.798502.822701.73630HepG2RPS5
RAB40CENSG00000197562.5162.4508081.981600.986505.398404.55120HepG2SAFB2
RAB40CENSG00000197562.5176.07430103.029700.773003.039101.66910HepG2SART3
RAB40CENSG00000197562.5476.97650338.669100.493902.397501.77110HepG2SF3A3
RAB40CENSG00000197562.5282.04570122.150701.2072011.9674010.68350HepG2SLBP
RAB40CENSG00000197562.5148.9100095.599100.639302.538501.91770HepG2SMN1
RAB40CENSG00000197562.5139.02690292.35930-1.072408.929508.18800HepG2SRSF1
RAB40CENSG00000197562.5304.98960125.783001.2777013.4329012.19480HepG2SRSF5
RAB40CENSG00000197562.5222.88010156.872800.506602.435601.77960HepG2SRSF7
RAB40CENSG00000197562.5156.79090237.84570-0.601203.517802.91190HepG2SRSF9
RAB40CENSG00000197562.5472.76510289.700100.706507.326906.56930HepG2SSB
RAB40CENSG00000197562.5196.0410095.226401.041605.630204.00950HepG2STIP1
RAB40CENSG00000197562.5292.48940143.050201.031806.811605.91090HepG2SUCLG1
RAB40CENSG00000197562.594.61970262.77060-1.4736013.6006012.49520HepG2TAF15
RAB40CENSG00000197562.5217.8604089.434901.284403.869703.29960HepG2TIAL1
RAB40CENSG00000197562.5249.1010090.255701.4645014.6459013.49320HepG2TRIM56
RAB40CENSG00000197562.5291.39480124.458301.227202.824601.94310HepG2TUFM
RAB40CENSG00000197562.5271.03920131.736901.040705.349504.16780HepG2UBE2L3
RAB40CENSG00000197562.5223.4985098.011201.189104.473003.06840HepG2XPO5
RAB40CENSG00000197562.5251.53810130.712600.944304.050303.18070HepG2XRN2
RAB40CENSG00000197562.5264.58900175.840100.589403.672302.91630HepG2ZC3H8
RAB40CENSG00000197562.5500.64600397.567800.332502.174001.66030K562AGGF1
RAB40CENSG00000197562.5655.02430436.876400.584205.244203.78900K562AKAP8
RAB40CENSG00000197562.5574.44440434.064400.404203.166602.18540K562ATP5C1
RAB40CENSG00000197562.5332.83460186.115500.838505.531703.54910K562BCCIP
RAB40CENSG00000197562.5360.24010179.857601.002009.826107.99770K562BCLAF1
RAB40CENSG00000197562.5283.69310136.448801.055905.759804.15310K562CSTF2
RAB40CENSG00000197562.5597.92200813.68100-0.444502.834101.84880K562CELF1
RAB40CENSG00000197562.5273.26730157.697600.793106.011804.06840K562DDX27
RAB40CENSG00000197562.5359.40300156.571601.198709.983208.14450K562EFTUD2
RAB40CENSG00000197562.5453.48140349.147900.377102.365701.69230K562EIF2S2
RAB40CENSG00000197562.5281.47380167.564900.748203.551202.36460K562EIF3D
RAB40CENSG00000197562.5141.1384096.499400.548402.031501.34100K562EIF3G
RAB40CENSG00000197562.5412.41480306.725800.427002.893301.70480K562EIF4B
RAB40CENSG00000197562.5413.35610262.440400.655302.784801.93300K562FIP1L1
RAB40CENSG00000197562.515.0921070.32540-2.220305.549304.46820K562G3BP2
RAB40CENSG00000197562.5607.55570465.224100.385002.321601.62650K562GRSF1
RAB40CENSG00000197562.5261.44760154.991500.754204.822403.15880K562IGF2BP3
RAB40CENSG00000197562.5289.25700160.153200.852806.136604.86490K562MAGOH
RAB40CENSG00000197562.5271.35680159.830300.763605.098403.79960K562MATR3
RAB40CENSG00000197562.5760.83230491.814400.629406.736705.19850K562MBNL1
RAB40CENSG00000197562.5251.32320152.364200.721902.272901.58980K562PRPF8
RAB40CENSG00000197562.5267.82650155.598000.783405.361104.46290K562PTBP1
RAB40CENSG00000197562.5549.45770767.95540-0.483004.915703.46090K562PUM1
RAB40CENSG00000197562.5505.63110399.740600.338902.122101.58970K562RBM15
RAB40CENSG00000197562.5243.06810149.206800.703903.940202.92250K562RBM22
RAB40CENSG00000197562.5283.92500145.442900.965003.788802.07280K562RBM34
RAB40CENSG00000197562.5272.60730155.145000.813102.687901.88450K562RPS19
RAB40CENSG00000197562.5232.70220144.893000.683402.633301.65840K562RPS3
RAB40CENSG00000197562.5124.1260073.066500.764402.881202.00740K562SF3B4
RAB40CENSG00000197562.541.9431088.60540-1.079003.074501.38290K562SND1
RAB40CENSG00000197562.5266.90410152.218700.810104.413502.29480K562SRP68
RAB40CENSG00000197562.5306.68190152.536401.007507.851906.66960K562SRSF1
RAB40CENSG00000197562.5273.04370139.860100.965005.936504.29250K562SRSF4
RAB40CENSG00000197562.5271.31220144.055600.913206.300404.60850K562SRSF5
RAB40CENSG00000197562.5245.32960147.423000.734703.258702.15140K562SUPV3L1
RAB40CENSG00000197562.529.4178069.02770-1.230502.885401.38140K562TAF15
RAB40CENSG00000197562.5343.65360154.379901.1544010.342208.83460K562TARDBP
RAB40CENSG00000197562.5355.64490148.916101.2558012.9235011.03250K562TIA1
RAB40CENSG00000197562.5291.31300146.123600.995307.029005.08890K562TRA2A
RAB40CENSG00000197562.5368.61460241.080000.612502.679101.75090K562TRIM56
RAB40CENSG00000197562.537.1889070.35570-0.919802.393401.64660K562U2AF2
RAB40CENSG00000197562.5235.36170156.078300.592502.349301.41970K562UCHL5
RAB40CENSG00000197562.5311.63030159.009100.970603.388002.00690K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB40C is not available on ENCORE database.






No RBPs affect the alternative splcing events of RAB40C on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RAB40C is not avaliable on ENCORE database.