PPP1R13L

General Information

Gene Name       : PPP1R13L
Gene ID             : ENSG00000104881.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPP1R13L)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPP1R13LENSG00000104881.151.872.252.06ENCSR000AEF
HepG2PPP1R13LENSG00000104881.1512.335.378.85ENCSR985KAT
K562PPP1R13LENSG00000104881.152.571.802.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPP1R13L is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPP1R13L RNA is bound by 10 proteins.  







eCLIP assay for PPP1R13L is not avaliable on ENCORE database.





10 proteins are bound to PPP1R13L RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194588295845883066-3'-UTR,CDS,intron-Distal4.129673.00640HepG2ZC3H11A
chr194589554345895613-CDS,intron-Distal,intron-Proximal6.0621538.71447K562SF3B4
chr194589551645895648-CDS,intron-Distal,intron-Proximal3.309437.76554K562BUD13
chr194589943045899512-CDS,intron-Distal,intron-Proximal4.0791610.07582K562ZNF622
chr194589880145898920-CDS,intron-Distal3.473164.80214K562HNRNPK
chr194589556745895649-CDS,intron-Distal,intron-Proximal4.7913312.20587HepG2SF3B4
chr194589942545899508-CDS,intron-Distal,intron-Proximal4.423926.98305HepG2PPIG
chr194589887645898974-CDS,intron-Distal3.846453.77855HepG2DDX59
chr194589943345899505-CDS,intron-Distal,intron-Proximal4.106033.26507K562MTPAP
chr194589942345899515-CDS,intron-Distal,intron-Proximal4.813447.47028K562DDX24
chr194589561345895648-intron-Distal,intron-Proximal5.6116726.70801K562SF3B4
chr194589852145898660-intron-Distal,intron-Proximal3.7370914.17673K562EFTUD2
chr194589860445898676-intron-Distal,intron-Proximal4.120746.67591K562SF3B4
chr194589860645898682-intron-Distal,intron-Proximal4.571264.08803K562MTPAP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPP1R13L is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPP1R13L is not available on ENCORE database.

  • 92 RBPs can affect the levels of PPP1R13L.  








The Knockdown/knockout RNA-Seq assay for PPP1R13L is not available on ENCORE database.





92 RBPs can affect the gene expression of PPP1R13L :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPP1R13LENSG00000104881.10552.22940328.803000.747909.537108.54700HepG2ACO1
PPP1R13LENSG00000104881.10354.97130237.621300.578902.216201.58970HepG2AUH
PPP1R13LENSG00000104881.10173.97760261.83450-0.589802.876802.09220HepG2CALR
PPP1R13LENSG00000104881.10171.63090328.72010-0.937609.421908.33830HepG2CKAP4
PPP1R13LENSG00000104881.10293.79750198.877100.562802.272301.64130HepG2CPSF6
PPP1R13LENSG00000104881.10310.12630204.881800.598002.191201.60890HepG2CELF1
PPP1R13LENSG00000104881.1084.80280165.17640-0.961804.466803.29510HepG2DDX24
PPP1R13LENSG00000104881.10255.35380170.755500.580502.792301.43080HepG2DDX52
PPP1R13LENSG00000104881.10222.18820108.128701.038904.559203.59290HepG2DDX55
PPP1R13LENSG00000104881.10547.57880202.101201.4379011.2693010.12210HepG2DDX6
PPP1R13LENSG00000104881.10165.71680314.57240-0.924707.820106.79170HepG2DKC1
PPP1R13LENSG00000104881.10293.10560117.539401.3182013.3475011.89220HepG2DNAJC21
PPP1R13LENSG00000104881.10208.42800116.504900.839105.652404.76750HepG2DNAJC2
PPP1R13LENSG00000104881.10470.31260194.106501.276707.555006.61230HepG2EIF2S1
PPP1R13LENSG00000104881.10255.91590377.09120-0.559202.350001.34060HepG2ESF1
PPP1R13LENSG00000104881.10384.02400272.826700.493103.269702.62480HepG2ETF1
PPP1R13LENSG00000104881.10278.04770147.810500.911506.732704.87730HepG2FAM120A
PPP1R13LENSG00000104881.10214.87320113.708300.918005.529204.55820HepG2HNRNPF
PPP1R13LENSG00000104881.10453.96320203.645201.156407.211306.12360HepG2HNRNPK
PPP1R13LENSG00000104881.10426.66410200.711301.0879014.4889013.05570HepG2HNRNPL
PPP1R13LENSG00000104881.10405.06300215.106600.913006.737405.80400HepG2HNRNPLL
PPP1R13LENSG00000104881.10234.35950405.78370-0.792004.919303.29660HepG2HSPD1
PPP1R13LENSG00000104881.10249.88220133.936400.899607.555306.40690HepG2ILF2
PPP1R13LENSG00000104881.10377.82940218.475500.790206.222305.08230HepG2NOL12
PPP1R13LENSG00000104881.10204.66480100.941701.019604.579302.75000HepG2NOLC1
PPP1R13LENSG00000104881.10630.66500242.277201.380104.639203.46920HepG2PABPC1
PPP1R13LENSG00000104881.10273.52690116.950001.2257011.5542010.10560HepG2PPIL4
PPP1R13LENSG00000104881.1088.96040164.02800-0.882703.305001.97980HepG2PRPF6
PPP1R13LENSG00000104881.10301.43940221.215000.446302.065501.48080HepG2PUM2
PPP1R13LENSG00000104881.10241.02410334.90550-0.474603.128102.48160HepG2PUS1
PPP1R13LENSG00000104881.1073.59040150.55710-1.032703.339102.56760HepG2RAVER1
PPP1R13LENSG00000104881.10729.32130514.433200.503504.673103.59450HepG2RBM15
PPP1R13LENSG00000104881.10103.25700161.74660-0.647502.420201.49900HepG2RBM27
PPP1R13LENSG00000104881.1084.55920147.93700-0.806902.726201.78920HepG2RPS10
PPP1R13LENSG00000104881.1092.11240160.90550-0.804703.339802.67260HepG2RPS19
PPP1R13LENSG00000104881.10277.29070116.769101.2476012.3291011.11650HepG2SAFB2
PPP1R13LENSG00000104881.1091.09590161.46750-0.825803.613302.53360HepG2SERBP1
PPP1R13LENSG00000104881.10206.52860370.59310-0.843505.428704.46500HepG2SF3A3
PPP1R13LENSG00000104881.10274.16490199.942700.455402.338701.68500HepG2SLBP
PPP1R13LENSG00000104881.10346.49990129.441701.420505.060003.14970HepG2SNRNP200
PPP1R13LENSG00000104881.10584.66510236.884201.3033010.536309.02160HepG2SNRNP70
PPP1R13LENSG00000104881.10642.12120257.551101.3179024.7509023.64250HepG2SRFBP1
PPP1R13LENSG00000104881.1048.26000228.00340-2.240205.376904.77260HepG2SRSF1
PPP1R13LENSG00000104881.10174.91030111.721500.646602.681301.99620HepG2SRSF7
PPP1R13LENSG00000104881.10306.29800185.522300.723203.015002.44400HepG2SRSF9
PPP1R13LENSG00000104881.10125.60110223.61160-0.832105.216704.55590HepG2SSB
PPP1R13LENSG00000104881.10162.50760397.18340-1.289307.047405.42880HepG2TBRG4
PPP1R13LENSG00000104881.10388.46680128.548601.5954024.3242022.85790HepG2TRIM56
PPP1R13LENSG00000104881.10142.76050376.00080-1.397106.503905.55730HepG2U2AF1
PPP1R13LENSG00000104881.10363.17580150.446901.271303.777702.61420HepG2U2AF2
PPP1R13LENSG00000104881.10409.37160215.628500.924805.773804.53550HepG2UBE2L3
PPP1R13LENSG00000104881.10161.50600317.30740-0.974308.144307.20440HepG2UTP3
PPP1R13LENSG00000104881.10487.11970226.109401.1072011.299508.94540K562ABCF1
PPP1R13LENSG00000104881.10216.49520314.40760-0.538302.645801.43510K562APOBEC3C
PPP1R13LENSG00000104881.10242.73590115.892301.066508.162906.48440K562BCLAF1
PPP1R13LENSG00000104881.10338.06290206.365500.712004.130803.06050K562BOP1
PPP1R13LENSG00000104881.10429.92240139.827901.620305.613303.97480K562CCAR1
PPP1R13LENSG00000104881.10445.82370219.414601.0227010.446208.90910K562CPSF6
PPP1R13LENSG00000104881.10168.3960087.921500.937504.367103.00100K562CSTF2
PPP1R13LENSG00000104881.10450.09150296.909300.600104.996803.33520K562DDX21
PPP1R13LENSG00000104881.10322.70190237.112300.444502.317001.36590K562DDX3X
PPP1R13LENSG00000104881.10307.20300156.565000.972305.461403.46350K562DHX30
PPP1R13LENSG00000104881.10345.67050260.447800.408302.530001.38630K562EIF2S1
PPP1R13LENSG00000104881.10563.34170356.338700.660704.975103.73330K562EIF4G2
PPP1R13LENSG00000104881.10356.72020202.965300.813502.658701.41980K562EXOSC5
PPP1R13LENSG00000104881.10317.34600223.270700.507202.391101.59430K562FMR1
PPP1R13LENSG00000104881.10371.36990189.251400.972503.606402.55020K562FTO
PPP1R13LENSG00000104881.1067.35610257.62260-1.9354020.4053018.87350K562FXR1
PPP1R13LENSG00000104881.1051.45770117.54090-1.191704.444403.50470K562G3BP2
PPP1R13LENSG00000104881.10418.40840306.227600.450203.068901.86610K562GLRX3
PPP1R13LENSG00000104881.10400.50510209.478000.934907.777506.44180K562GPKOW
PPP1R13LENSG00000104881.10211.34440130.013700.700803.087702.46140K562HNRNPC
PPP1R13LENSG00000104881.10226.99700116.148100.966602.541301.45430K562HNRNPF
PPP1R13LENSG00000104881.1088.31260153.11990-0.794003.005701.71740K562HNRNPK
PPP1R13LENSG00000104881.10422.16680299.861700.493403.200902.05520K562HNRNPL
PPP1R13LENSG00000104881.10121.98710220.38170-0.853304.242703.26330K562HSPD1
PPP1R13LENSG00000104881.10273.33940160.801900.765305.131803.82790K562MATR3
PPP1R13LENSG00000104881.10363.74260204.477700.830906.324104.97180K562METAP2
PPP1R13LENSG00000104881.10550.05770357.702700.620707.120506.00320K562NSUN2
PPP1R13LENSG00000104881.10202.40260128.081100.660102.838801.39540K562NUSAP1
PPP1R13LENSG00000104881.10285.25120184.569600.628003.467102.53310K562PPIG
PPP1R13LENSG00000104881.10117.50440224.09920-0.931403.795201.60300K562PRPF6
PPP1R13LENSG00000104881.1040.8244095.23670-1.222103.014602.23160K562PRPF8
PPP1R13LENSG00000104881.10219.61540116.583600.913504.512903.31400K562PSIP1
PPP1R13LENSG00000104881.1077.29700156.55570-1.018205.431304.52830K562PTBP1
PPP1R13LENSG00000104881.10542.14290405.166800.420102.551801.62850K562PUM2
PPP1R13LENSG00000104881.10304.23770149.217101.027704.713002.16360K562RBFOX2
PPP1R13LENSG00000104881.10309.31890212.903500.538802.332001.42150K562RPS3
PPP1R13LENSG00000104881.1082.72260176.49510-1.093303.605102.36100K562SAFB
PPP1R13LENSG00000104881.10560.99530283.059500.986804.406902.60810K562SFPQ
PPP1R13LENSG00000104881.10266.61210153.956500.792103.790002.29310K562SLBP
PPP1R13LENSG00000104881.10336.97600205.516400.713304.287202.93290K562SRSF4
PPP1R13LENSG00000104881.10351.30300264.938200.407002.502801.39370K562SRSF7
PPP1R13LENSG00000104881.1035.28820198.63210-2.492809.990808.42200K562SYNCRIP
PPP1R13LENSG00000104881.10243.87440149.829500.702703.855102.86670K562TIA1
PPP1R13LENSG00000104881.10334.43530112.126501.5765014.8554012.57190K562TIAL1
PPP1R13LENSG00000104881.10256.96500119.188201.108205.430403.99780K562TRIM56
PPP1R13LENSG00000104881.10302.49760190.076100.670203.648502.00250K562TRIP6
PPP1R13LENSG00000104881.1066.45450113.92070-0.777602.346001.34980K562U2AF1
PPP1R13LENSG00000104881.1071.73660117.66010-0.713802.411701.66180K562U2AF2
PPP1R13LENSG00000104881.10182.5986097.546100.904403.562802.39660K562UCHL5
PPP1R13LENSG00000104881.10615.58210379.281900.698604.913803.98650K562UPF1
PPP1R13LENSG00000104881.10469.39980324.536000.532303.009902.09920K562WDR3
PPP1R13LENSG00000104881.10109.08940211.12530-0.952603.826401.88810K562XRCC6
PPP1R13LENSG00000104881.10538.24960279.691200.944303.424502.44810K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPP1R13L is not available on ENCORE database.





4 RBPs can affect the splicing of PPP1R13L :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPPP1R13LENSG00000104881.10chr19-4590825645908339459015214590159745909549459095850.359000.001920.05201includedK562AKAP8L
SEPPP1R13LENSG00000104881.10chr19-459082564590833945901521459015974590954945909585-0.578000.000080.01209excludedK562XRCC6
SEPPP1R13LENSG00000104881.10chr19-459082564590833945901521459015974590954945909585-0.729000.000200.01089excludedK562FXR1
SEPPP1R13LENSG00000104881.10chr19-4590825645908339459015214590159745909549459095850.490000.000850.04066includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PPP1R13L is not avaliable on ENCORE database.