PARD6B

General Information

Gene Name       : PARD6B
Gene ID             : ENSG00000124171.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PARD6B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PARD6BENSG00000124171.80.670.440.56ENCSR000AEF
HepG2PARD6BENSG00000124171.82.254.413.33ENCSR985KAT
K562PARD6BENSG00000124171.81.811.131.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PARD6B is not avaliable on ENCORE database.



Proteins bound to RNA
  • PARD6B RNA is bound by 19 proteins.  







eCLIP assay for PARD6B is not avaliable on ENCORE database.





19 proteins are bound to PARD6B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr204936705649367111+3'-UTR,intron-Distal4.118356.62754K562PUM2
chr204936904949369173+3'-UTR,intron-Distal4.629539.65805K562PUM2
chr204937010649370155+3'-UTR,intron-Distal4.232563.66896HepG2FUBP3
chr204936872849368798+3'-UTR,intron-Distal4.232567.07555HepG2FUBP3
chr204934816349348270+5'-UTR4.411015.17013K562RBM15
chr204934809549348216+5'-UTR4.2122511.34202HepG2DDX3X
chr204934810449348205+5'-UTR4.248653.77023K562ZNF622
chr204934813749348218+5'-UTR3.775616.81103HepG2PPIG
chr204934812049348203+5'-UTR3.112105.13820HepG2NCBP2
chr204935437849354445+CDS,intron-Proximal3.447865.58362HepG2U2AF2
chr204936660349366648+CDS,intron-Distal3.826265.35703HepG2BCLAF1
chr204936675949366833+CDS,intron-Distal4.059623.71613K562UCHL5
chr204936674149366870+CDS,intron-Distal3.083535.54854HepG2GRWD1
chr204936666749366717+CDS,intron-Distal3.287864.85828HepG2BCLAF1
chr204936618849366247+CDS,intron-Distal,intron-Proximal3.700763.81059HepG2AQR
chr204936659249366710+CDS,intron-Distal3.474734.65365HepG2GRWD1
chr204934838749348397+CDS,intron-Proximal4.729053.93614HepG2AQR
chr204934839549348603+intron-Distal,intron-Proximal3.067655.49822HepG2GTF2F1
chr204935465249354757+intron-Distal,intron-Proximal4.981337.00602HepG2KHSRP
chr204934847249348521+intron-Distal,intron-Proximal5.088339.24251HepG2EFTUD2
chr204935463549354818+intron-Distal,intron-Proximal3.027064.03548K562KHSRP
chr204936113949361262+intron-Distal5.283115.77028HepG2PCBP2
chr204935129049351341+intron-Distal3.429933.96925HepG2ILF3
chr204934847949348526+intron-Distal,intron-Proximal3.875463.13028HepG2FAM120A
chr204934843849348502+intron-Distal,intron-Proximal3.697225.00225K562GEMIN5
chr204934839749348426+intron-Proximal3.847153.39008HepG2AQR
chr204934842549348472+intron-Proximal3.845178.08764HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PARD6B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PARD6B is not available on ENCORE database.

  • 80 RBPs can affect the levels of PARD6B.  








The Knockdown/knockout RNA-Seq assay for PARD6B is not available on ENCORE database.





80 RBPs can affect the gene expression of PARD6B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PARD6BENSG00000124171.4557.17430259.072801.1047018.3070017.03740HepG2ACO1
PARD6BENSG00000124171.4872.59330620.925300.490803.017102.46430HepG2AKAP1
PARD6BENSG00000124171.4355.40850260.329300.449002.575801.83280HepG2AKAP8L
PARD6BENSG00000124171.4665.04830484.264200.457604.382803.55360HepG2AUH
PARD6BENSG00000124171.4415.02520308.240500.429002.318801.46300HepG2BCCIP
PARD6BENSG00000124171.4427.15550297.299100.522702.517701.94370HepG2BOP1
PARD6BENSG00000124171.4638.73770318.443101.0041013.1627011.69380HepG2CALR
PARD6BENSG00000124171.4394.01210259.063800.604805.301604.43530HepG2CKAP4
PARD6BENSG00000124171.4771.21450407.724800.919406.421805.25500HepG2CNOT7
PARD6BENSG00000124171.4660.21820457.075200.530405.715104.85450HepG2CELF1
PARD6BENSG00000124171.4364.08700491.42340-0.432702.679101.94740HepG2DAZAP1
PARD6BENSG00000124171.4301.54490221.988300.441801.954201.37150HepG2DDX21
PARD6BENSG00000124171.4369.04210217.104400.765305.573604.27480HepG2DDX24
PARD6BENSG00000124171.41059.60550594.802600.832909.012807.93910HepG2DDX3X
PARD6BENSG00000124171.4465.22330303.036200.618304.073203.15420HepG2DDX55
PARD6BENSG00000124171.4471.33980309.951900.604602.563401.62370HepG2DDX59
PARD6BENSG00000124171.4414.99140247.874700.743406.773705.80390HepG2DKC1
PARD6BENSG00000124171.4166.63170234.88490-0.495302.675902.03300HepG2DNAJC2
PARD6BENSG00000124171.4914.00620555.981300.7171011.7747010.67580HepG2ETF1
PARD6BENSG00000124171.4400.20330253.202400.660304.923903.81240HepG2EWSR1
PARD6BENSG00000124171.4457.77300280.594300.706003.669002.79050HepG2FIP1L1
PARD6BENSG00000124171.4326.68380547.67450-0.745405.790604.81310HepG2FXR1
PARD6BENSG00000124171.4416.59600238.960800.801802.936401.88600HepG2GNB2L1
PARD6BENSG00000124171.4491.21860309.453700.666504.378803.58540HepG2GPKOW
PARD6BENSG00000124171.4354.05460247.369000.517203.808702.67670HepG2HDGF
PARD6BENSG00000124171.4300.71110447.63560-0.573904.991104.10580HepG2HNRNPL
PARD6BENSG00000124171.4468.93480295.313600.667004.632603.83970HepG2HNRNPLL
PARD6BENSG00000124171.4192.95590270.02650-0.484802.815702.07790HepG2ILF2
PARD6BENSG00000124171.4354.56860501.16400-0.499202.197101.46360HepG2LARP4
PARD6BENSG00000124171.4423.26060245.852800.783706.738304.89570HepG2LIN28B
PARD6BENSG00000124171.4384.87010227.009000.761505.087804.01540HepG2MSI2
PARD6BENSG00000124171.41004.71040563.912700.833108.734507.64240HepG2NCBP2
PARD6BENSG00000124171.4337.27290487.29680-0.530904.064203.13990HepG2NOL12
PARD6BENSG00000124171.4741.42790372.666300.992305.584004.29020HepG2PABPC1
PARD6BENSG00000124171.41027.37770502.207501.0325013.3046011.74940HepG2PABPC4
PARD6BENSG00000124171.4536.88830284.384700.916706.404204.87850HepG2PCBP2
PARD6BENSG00000124171.4378.09170233.920600.692604.722203.69870HepG2PRPF8
PARD6BENSG00000124171.4322.47500493.82340-0.614805.839305.04250HepG2PUM1
PARD6BENSG00000124171.4581.24470274.541601.082006.881205.79590HepG2RAVER1
PARD6BENSG00000124171.41140.96680464.701401.2958032.7226031.32940HepG2RBM22
PARD6BENSG00000124171.4411.26140282.151500.543502.736601.74930HepG2RBM27
PARD6BENSG00000124171.4407.56200266.351300.613603.779803.00160HepG2RPLP0
PARD6BENSG00000124171.4405.52880260.251400.639804.174003.19940HepG2RPS2
PARD6BENSG00000124171.4417.03560265.624800.650704.822403.39090HepG2RPS5
PARD6BENSG00000124171.4448.46890231.410900.954507.851506.60910HepG2RRP9
PARD6BENSG00000124171.4488.20600298.433900.710003.769701.97500HepG2RTF1
PARD6BENSG00000124171.4164.29050235.41560-0.519002.667602.03220HepG2SAFB2
PARD6BENSG00000124171.4319.60180199.710800.678304.119402.97660HepG2SERBP1
PARD6BENSG00000124171.4989.70420356.335901.4737016.1959014.49160HepG2SF3A3
PARD6BENSG00000124171.4307.73410446.06470-0.535604.402803.54810HepG2SLBP
PARD6BENSG00000124171.4504.85890325.255400.634202.750301.97180HepG2SNRNP70
PARD6BENSG00000124171.41855.58230524.870101.8217094.9166093.04650HepG2SRFBP1
PARD6BENSG00000124171.4728.82520548.427900.410203.793403.26170HepG2SRSF1
PARD6BENSG00000124171.4560.41060314.475800.833404.233902.96810HepG2SRSF3
PARD6BENSG00000124171.4347.37880242.893600.516103.340802.58600HepG2SRSF7
PARD6BENSG00000124171.4790.83770455.723600.7951013.5090012.54760HepG2SSB
PARD6BENSG00000124171.4400.84230256.537400.643802.852701.63080HepG2SUB1
PARD6BENSG00000124171.4286.61190522.35250-0.8659011.063309.96010HepG2SUCLG1
PARD6BENSG00000124171.4596.58030301.712100.983409.334208.21480HepG2SUPV3L1
PARD6BENSG00000124171.4468.23540287.729400.702403.707902.88460HepG2TARDBP
PARD6BENSG00000124171.4199.53100259.16450-0.377301.794801.32050HepG2TRIM56
PARD6BENSG00000124171.4335.33420454.48470-0.438602.512601.68300HepG2TUFM
PARD6BENSG00000124171.41061.82610239.981402.1455046.5659043.94640HepG2U2AF1
PARD6BENSG00000124171.4627.78720267.065601.233003.979702.78410HepG2U2AF2
PARD6BENSG00000124171.4459.63530301.822200.606702.830701.76310HepG2XRCC6
PARD6BENSG00000124171.4414.01500212.758500.9604011.3402010.13780HepG2ZC3H8
PARD6BENSG00000124171.4549.20490347.556500.660008.191007.37900HepG2ZNF622
PARD6BENSG00000124171.4254.15240153.219600.730004.532903.83850K562AGGF1
PARD6BENSG00000124171.4225.01070159.433700.496902.148601.57000K562AKAP8L
PARD6BENSG00000124171.4496.33440228.475801.1192010.959609.90470K562AQR
PARD6BENSG00000124171.4269.88760183.100200.559603.115801.85220K562CCDC124
PARD6BENSG00000124171.4236.02100132.439500.833504.654303.45530K562EFTUD2
PARD6BENSG00000124171.4105.03830172.26440-0.713703.426202.06710K562EIF2S1
PARD6BENSG00000124171.4104.80060154.96790-0.564302.085701.44600K562EIF2S2
PARD6BENSG00000124171.4104.90470158.73840-0.597602.339001.35680K562HNRNPA1
PARD6BENSG00000124171.4302.89110189.539600.676204.257103.08800K562MBNL1
PARD6BENSG00000124171.495.67590155.91120-0.704502.910802.08080K562MTPAP
PARD6BENSG00000124171.4114.36690173.21420-0.598902.452801.74610K562NSUN2
PARD6BENSG00000124171.4378.46770182.629201.051209.374207.54680K562PCBP2
PARD6BENSG00000124171.4244.54140128.878400.924005.012904.00670K562PRPF8
PARD6BENSG00000124171.4282.88940158.102000.839304.880004.18500K562PUS1
PARD6BENSG00000124171.4263.72100154.056900.775405.029704.25150K562RBM15
PARD6BENSG00000124171.4131.11060195.49010-0.576302.388201.72310K562SRSF1
PARD6BENSG00000124171.4129.05520197.85470-0.616502.648001.95380K562TARDBP
PARD6BENSG00000124171.4346.57040161.946601.0975011.107909.48600K562U2AF2
PARD6BENSG00000124171.4124.50290183.66400-0.560902.320101.65880K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PARD6B is not available on ENCORE database.





1 RBPs can affect the splicing of PARD6B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPARD6BENSG00000124171.4chr20+4935439349354616493482014934838949366195493702780.144000.000330.00814includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PARD6B is not avaliable on ENCORE database.