NGRN

General Information

Gene Name       : NGRN
Gene ID             : ENSG00000182768.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NGRN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NGRNENSG00000182768.813.1612.4712.82ENCSR000AEF
HepG2NGRNENSG00000182768.831.2244.9738.09ENCSR985KAT
K562NGRNENSG00000182768.834.6238.0336.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
NGRN293TshRNANGRN-BG293LV02-31,NGRN-BG293LV02-32NT-BG293LV02-1,NT-BG293LV02-2,RevokedENCORE2
NGRN293TshRNANGRN-BG293LV06-105B,NGRN-BG293LV06-106BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NGRN is not avaliable on ENCORE database.



Proteins bound to RNA
  • NGRN RNA is bound by 14 proteins.  







eCLIP assay for NGRN is not avaliable on ENCORE database.





14 proteins are bound to NGRN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr159081526390815361+3'-UTR6.2184413.92511HepG2SUB1
chr159081503290815074+3'-UTR4.4227011.06802HepG2LIN28B
chr159081502290815126+3'-UTR4.6697523.08487K562LIN28B
chr159081507690815153+3'-UTR3.847075.85226K562UCHL5
chr159081526790815331+3'-UTR3.029513.21497K562NOLC1
chr159081532190815422+3'-UTR3.627454.76828K562IGF2BP1
chr159080891190809058+5'-UTR,CDS,intron-Distal3.4049911.73000K562DDX3X
chr159081451390814569+3'-UTR,CDS4.764286.19943K562RBM15
chr159081448990814538+3'-UTR,CDS4.0383011.79269K562YBX3
chr159080907790809153+CDS,intron-Distal,intron-Proximal4.282973.72779HepG2LARP4
chr159080907090809137+CDS,intron-Distal,intron-Proximal4.222217.02113HepG2RPS3
chr159080956290809618+3'-UTR,CDS3.471014.05694K562IGF2BP1
chr159080950590809532+3'-UTR,CDS,intron-Proximal3.776243.84724HepG2IGF2BP1
chr159080953290809556+3'-UTR,CDS4.648934.33846HepG2IGF2BP1
chr159080955690809618+3'-UTR,CDS3.574023.38325HepG2IGF2BP1
chr159081482790814840+3'-UTR,CDS3.107235.40086K562YBX3
chr159080955690809614+3'-UTR,CDS4.238149.77241K562IGF2BP2
chr159081477290814882+3'-UTR,CDS3.944498.99604K562UPF1
chr159081480190814843+3'-UTR,CDS3.293863.34231K562RBM15
chr159081484090814910+3'-UTR,CDS3.101417.92314K562YBX3
chr159080936790809411+intron-Distal3.758623.19904K562TIA1
chr159080934490809405+intron-Distal4.570718.31731HepG2SUB1
chr159080922690809307+intron-Distal3.114656.47070K562IGF2BP2
chr159081361890813696+intron-Distal4.118494.07628HepG2PTBP1
chr159080915390809288+intron-Distal,intron-Proximal5.7021011.16260HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NGRN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NGRN is not available on ENCORE database.

  • 83 RBPs can affect the levels of NGRN.  








The Knockdown/knockout RNA-Seq assay for NGRN is not available on ENCORE database.





83 RBPs can affect the gene expression of NGRN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NGRNENSG00000182768.71137.40140905.313100.329202.342601.35180HepG2AATF
NGRNENSG00000182768.71793.036201260.181000.5087010.726909.69310HepG2ACO1
NGRNENSG00000182768.72447.779401764.342000.472204.005902.75630HepG2AKAP8
NGRNENSG00000182768.72563.972601884.083900.444404.045703.10290HepG2ASCC1
NGRNENSG00000182768.72319.315101853.804400.323104.504503.66510HepG2AUH
NGRNENSG00000182768.7846.288101343.46260-0.666706.275204.83710HepG2BCCIP
NGRNENSG00000182768.73033.812701740.361900.8016014.4726013.25450HepG2BOP1
NGRNENSG00000182768.71565.268101192.138500.392804.075603.16310HepG2CALR
NGRNENSG00000182768.71629.035601050.477500.6329011.812209.79720HepG2YBX3
NGRNENSG00000182768.71057.41500829.746900.349702.327001.33270HepG2CSTF2
NGRNENSG00000182768.71575.599501805.72850-0.196702.059101.40630HepG2DAZAP1
NGRNENSG00000182768.71241.97060999.170300.313702.242201.62420HepG2DDX21
NGRNENSG00000182768.71315.94450977.487000.428804.310403.16040HepG2DDX24
NGRNENSG00000182768.71503.834601205.654600.318703.852803.07860HepG2DKC1
NGRNENSG00000182768.71118.655201801.30250-0.687307.734706.77980HepG2EIF2S1
NGRNENSG00000182768.7893.729101279.78100-0.518006.014104.34120HepG2EIF2S2
NGRNENSG00000182768.71491.39950943.369600.660709.792408.01340HepG2EIF3G
NGRNENSG00000182768.73154.583501938.124000.702706.310005.30180HepG2EIF4B
NGRNENSG00000182768.71365.902301706.61650-0.321302.365101.60960HepG2EIF4G2
NGRNENSG00000182768.74831.431102128.508001.1825063.7591061.59360HepG2ETF1
NGRNENSG00000182768.71839.777901231.432000.579108.077906.66400HepG2EWSR1
NGRNENSG00000182768.71436.329601811.09580-0.334502.178301.60630HepG2GPKOW
NGRNENSG00000182768.71419.607201203.118900.238602.459801.53230HepG2HDGF
NGRNENSG00000182768.72085.343301659.580900.329404.821703.64160HepG2HNRNPA2B1
NGRNENSG00000182768.71437.506901644.83980-0.194402.089901.49370HepG2HNRNPL
NGRNENSG00000182768.72137.149101728.366900.306202.208701.64000HepG2HNRNPLL
NGRNENSG00000182768.73076.741602241.894700.456603.275302.36940HepG2LARP4
NGRNENSG00000182768.7767.261001143.06660-0.575106.116504.34380HepG2LIN28B
NGRNENSG00000182768.72633.138602009.067000.390203.178102.47560HepG2MAGOH
NGRNENSG00000182768.71516.081201823.66030-0.266503.226402.58030HepG2PCBP1
NGRNENSG00000182768.71687.680201175.449400.521709.504008.19580HepG2PRPF4
NGRNENSG00000182768.71648.405901201.645900.456002.472601.31680HepG2PRPF6
NGRNENSG00000182768.71295.720401855.65320-0.518209.408908.51800HepG2PTBP1
NGRNENSG00000182768.72933.278301779.019500.7213018.4944017.39510HepG2RBM22
NGRNENSG00000182768.71527.747801823.93640-0.255602.031801.44850HepG2RBM25
NGRNENSG00000182768.71692.702302065.15490-0.286903.567702.96930HepG2NELFE
NGRNENSG00000182768.71559.953101923.42730-0.302203.959503.23870HepG2RECQL
NGRNENSG00000182768.73711.541501997.977700.8934019.3668017.88880HepG2RPLP0
NGRNENSG00000182768.71563.17840860.729400.8608015.0910013.81350HepG2RPS19
NGRNENSG00000182768.71816.870101210.831100.585406.242605.06850HepG2RPS2
NGRNENSG00000182768.73206.140001687.195000.9261010.737009.34520HepG2SF3A3
NGRNENSG00000182768.71533.671201194.995100.359906.025505.13340HepG2SMN1
NGRNENSG00000182768.72611.576901903.477200.456202.399401.67390HepG2SNRNP70
NGRNENSG00000182768.73126.784402009.303000.6379019.9878018.96370HepG2SRFBP1
NGRNENSG00000182768.72144.572701687.724000.345505.556604.71430HepG2SRSF5
NGRNENSG00000182768.72006.357101314.918300.609505.573704.66570HepG2SUPV3L1
NGRNENSG00000182768.72375.633601812.576300.390205.788805.02890HepG2TAF15
NGRNENSG00000182768.71854.271801118.079300.7297014.1942013.21570HepG2TIAL1
NGRNENSG00000182768.71487.212201128.087800.398605.885305.11680HepG2TRIM56
NGRNENSG00000182768.7984.615601457.26680-0.565605.820104.92530HepG2U2AF1
NGRNENSG00000182768.71150.46580776.724000.566604.964903.94160HepG2UCHL5
NGRNENSG00000182768.72306.824001496.281900.6244017.1383015.69200HepG2UPF1
NGRNENSG00000182768.71846.985901203.913400.617304.337103.06390HepG2UPF2
NGRNENSG00000182768.72232.769801444.604600.6281016.5827015.29950HepG2UTP3
NGRNENSG00000182768.7830.700901160.02570-0.481807.841406.80600HepG2ZC3H8
NGRNENSG00000182768.72886.366701645.626600.8105036.7142035.31170HepG2ZNF622
NGRNENSG00000182768.72609.431401863.270800.4858010.630309.61310K562AGGF1
NGRNENSG00000182768.72623.480001938.823000.436205.004604.11390K562AKAP8L
NGRNENSG00000182768.75557.478002539.527801.1298029.5443027.83140K562AQR
NGRNENSG00000182768.72422.463502034.301900.251802.756501.84490K562ATP5C1
NGRNENSG00000182768.7964.013301576.64540-0.7097014.4648011.46970K562BCCIP
NGRNENSG00000182768.73148.963602427.887800.375107.007406.03680K562DDX47
NGRNENSG00000182768.71841.964402212.94670-0.264703.037402.28930K562EIF2S2
NGRNENSG00000182768.71448.275801067.359100.440206.034504.87290K562EIF3G
NGRNENSG00000182768.71994.541701238.214800.6877010.141108.55280K562EIF4A3
NGRNENSG00000182768.71957.699301287.686700.6043012.0319010.86190K562FXR1
NGRNENSG00000182768.73630.196102948.932100.299802.908602.13490K562GRSF1
NGRNENSG00000182768.71288.072501562.99150-0.279102.225101.68120K562HNRNPC
NGRNENSG00000182768.71086.939001395.96240-0.361003.152401.93170K562HNRNPF
NGRNENSG00000182768.71704.012001300.949200.389303.011101.72100K562HNRNPK
NGRNENSG00000182768.72256.775601681.289200.424603.346802.31530K562HNRNPM
NGRNENSG00000182768.7875.384601585.67340-0.8571011.646708.51560K562LIN28B
NGRNENSG00000182768.71095.432001394.17610-0.347903.019701.40920K562LSM11
NGRNENSG00000182768.72002.237101368.893700.548507.500006.08960K562MAGOH
NGRNENSG00000182768.72399.009701969.603600.284402.704201.64340K562MAK16
NGRNENSG00000182768.72234.381601615.630200.467703.295002.31650K562NAA15
NGRNENSG00000182768.71693.854301271.532100.413603.718002.84820K562PRPF8
NGRNENSG00000182768.71079.079101401.44370-0.377103.195902.21250K562PSIP1
NGRNENSG00000182768.71834.028401329.952300.463505.813304.87970K562PTBP1
NGRNENSG00000182768.74652.959903211.286100.534907.457706.11540K562PUF60
NGRNENSG00000182768.74213.895803415.692000.302903.715702.46400K562PUM1
NGRNENSG00000182768.73442.402701922.743000.8401014.8994013.68080K562PUS1
NGRNENSG00000182768.72459.760501873.454400.392704.930104.15950K562RBM15
NGRNENSG00000182768.71290.213901051.357500.295303.757601.92220K562RPS10
NGRNENSG00000182768.72493.656002129.373700.227702.321301.56850K562SF3A3
NGRNENSG00000182768.71474.505801194.446100.303802.794001.93420K562SF3B4
NGRNENSG00000182768.71560.747201303.776100.259402.035401.41850K562SRSF1
NGRNENSG00000182768.71568.317102453.28750-0.645507.800405.64000K562STAU1
NGRNENSG00000182768.71386.996101150.027500.270202.208101.49040K562U2AF2
NGRNENSG00000182768.73750.840502288.263100.7129025.1571023.25860K562UPF1
NGRNENSG00000182768.72220.261901764.925200.331003.283101.44400K562UPF2
NGRNENSG00000182768.72481.486502036.030900.285304.567303.49930K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NGRN is not available on ENCORE database.






No RBPs affect the alternative splcing events of NGRN on ENCORE database.





The Knockdown/knockout RNA-Seq assay for NGRN is not avaliable on ENCORE database.