NAGPA

General Information

Gene Name       : NAGPA
Gene ID             : ENSG00000103174.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NAGPA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NAGPAENSG00000103174.120.411.871.14ENCSR000AEF
HepG2NAGPAENSG00000103174.1245.7015.4330.57ENCSR985KAT
K562NAGPAENSG00000103174.126.193.074.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NAGPA is not avaliable on ENCORE database.



Proteins bound to RNA
  • NAGPA RNA is bound by 11 proteins.  







eCLIP assay for NAGPA is not avaliable on ENCORE database.





11 proteins are bound to NAGPA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1650756275075686-3'-UTR,CDS,intron-Distal3.083704.79877HepG2SND1
chr1650778285077900-3'-UTR,CDS,intron-Distal,intron-Proximal3.8763513.82681HepG2PRPF8
chr1650755575075611-3'-UTR,CDS,intron-Distal3.465425.03100HepG2SND1
chr1650751075075282-3'-UTR,intron-Distal5.3373018.89707HepG2UPF1
chr1650751825075248-3'-UTR,intron-Distal4.834388.59403HepG2LARP4
chr1650751795075275-3'-UTR,intron-Distal3.931545.37876HepG2AKAP1
chr1650772855077364-3'-UTR,CDS,intron-Distal,intron-Proximal4.902414.06516HepG2SND1
chr1650780275078175-3'-UTR,CDS,intron-Distal,intron-Proximal3.481356.39275HepG2SND1
chr1650771565077199-3'-UTR,CDS,intron-Distal,intron-Proximal3.539236.06370HepG2BUD13
chr1650752825075419-3'-UTR,intron-Distal4.691536.23064HepG2UPF1
chr1650752945075351-3'-UTR,intron-Distal3.114683.96118HepG2LARP4
chr1650753625075422-3'-UTR,intron-Distal4.684776.37221HepG2LARP4
chr1650751415075182-3'-UTR,intron-Distal3.638223.81620HepG2LARP4
chr1650781585078255-3'-UTR,CDS,intron-Distal,intron-Proximal4.0248510.47098HepG2EFTUD2
chr1650778105077850-3'-UTR,CDS,intron-Distal,intron-Proximal4.193513.25089HepG2AQR
chr1650817385081793-5'-UTR,CDS,intron-Distal,intron-Proximal4.051124.68902HepG2PPIG
chr1650834195083505-CDS,intron-Distal,intron-Proximal4.607429.78299HepG2SND1
chr1650835125083574-CDS,intron-Distal3.367783.41356HepG2SND1
chr1650788285078895-CDS,intron-Distal,intron-Proximal3.8062614.37856HepG2PRPF8
chr1650834155083504-CDS,intron-Distal,intron-Proximal3.815298.58457HepG2DDX3X
chr1650834125083568-CDS,intron-Distal,intron-Proximal4.6100312.82650HepG2RPS3
chr1650777935077828-intron-Distal,intron-Proximal3.470317.39618HepG2PRPF8
chr1650771995077250-intron-Distal,intron-Proximal4.005256.20417HepG2BUD13
chr1650779255077977-intron-Distal,intron-Proximal5.379549.06713HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NAGPA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NAGPA is not available on ENCORE database.

  • 84 RBPs can affect the levels of NAGPA.  








The Knockdown/knockout RNA-Seq assay for NAGPA is not available on ENCORE database.





84 RBPs can affect the gene expression of NAGPA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NAGPAENSG00000103174.7715.03640488.077200.550804.130302.93840HepG2ADAR
NAGPAENSG00000103174.71556.37300831.526700.9043012.2348010.67670HepG2ASCC1
NAGPAENSG00000103174.71116.39680718.528600.635603.966202.84360HepG2BCCIP
NAGPAENSG00000103174.7937.73800624.218900.587003.752602.71890HepG2BCLAF1
NAGPAENSG00000103174.71429.46140725.059900.9792016.4323015.15130HepG2BOP1
NAGPAENSG00000103174.7489.93600655.86450-0.420802.079601.40410HepG2CALR
NAGPAENSG00000103174.71181.56530790.029600.580605.342204.28540HepG2CIRBP
NAGPAENSG00000103174.7689.73580360.115600.937505.295604.23500HepG2CNOT7
NAGPAENSG00000103174.7643.85410500.528000.363202.228601.31720HepG2YBX3
NAGPAENSG00000103174.7349.87160609.09840-0.799802.700501.36760HepG2CSTF2T
NAGPAENSG00000103174.71149.50890859.755400.418905.362104.51990HepG2CELF1
NAGPAENSG00000103174.71105.22590924.332800.257802.912702.15470HepG2DAZAP1
NAGPAENSG00000103174.7854.75900501.205300.770005.038903.51010HepG2DDX1
NAGPAENSG00000103174.7464.69430654.97590-0.495202.330401.70100HepG2DDX21
NAGPAENSG00000103174.72726.60870962.616101.5020033.8721031.95010HepG2DDX3X
NAGPAENSG00000103174.7715.90000491.451200.542605.936504.93810HepG2DNAJC21
NAGPAENSG00000103174.7628.10220487.154800.366502.168701.57820HepG2DNAJC2
NAGPAENSG00000103174.71864.28070794.915101.2296018.1477016.71820HepG2EIF2S1
NAGPAENSG00000103174.71305.98380878.309400.572204.553003.73640HepG2EIF4A3
NAGPAENSG00000103174.7524.75730855.47290-0.705103.404602.64450HepG2EIF4B
NAGPAENSG00000103174.71405.674301085.680000.372603.399402.47240HepG2EWSR1
NAGPAENSG00000103174.71078.42140666.806900.693502.686601.68460HepG2FTO
NAGPAENSG00000103174.7304.65820718.94180-1.2387018.2573016.31800HepG2FUBP3
NAGPAENSG00000103174.71363.94070886.677400.621206.100605.09870HepG2FXR1
NAGPAENSG00000103174.71008.27700754.482500.418202.630402.00360HepG2GPKOW
NAGPAENSG00000103174.7595.95170333.401600.837805.705404.09660HepG2GRSF1
NAGPAENSG00000103174.71135.92100833.227200.447003.491402.71160HepG2HNRNPK
NAGPAENSG00000103174.71084.91400841.961500.365705.100604.20850HepG2HNRNPL
NAGPAENSG00000103174.71100.90340720.021500.612505.733104.86020HepG2HNRNPLL
NAGPAENSG00000103174.7811.21320548.250600.565107.410006.45530HepG2HNRNPU
NAGPAENSG00000103174.71067.80690850.337500.328402.723802.00590HepG2IGF2BP1
NAGPAENSG00000103174.71530.82080835.716000.8731011.6304010.34980HepG2IGF2BP2
NAGPAENSG00000103174.7870.46850560.017400.6362011.5199010.13790HepG2ILF2
NAGPAENSG00000103174.71437.59480886.989200.696607.367806.31250HepG2MAGOH
NAGPAENSG00000103174.7716.86120917.42460-0.355902.935402.10290HepG2MSI2
NAGPAENSG00000103174.71898.03240912.814701.0560015.9790014.53980HepG2NCBP2
NAGPAENSG00000103174.71425.55940916.572700.637103.262602.43730HepG2NOL12
NAGPAENSG00000103174.71193.15760649.108300.878204.800503.33700HepG2NONO
NAGPAENSG00000103174.71239.85210812.617300.609404.372603.47880HepG2PABPC4
NAGPAENSG00000103174.71127.12460811.445500.474006.568105.69500HepG2PCBP1
NAGPAENSG00000103174.7846.16360488.993300.7910010.076308.71940HepG2PPIL4
NAGPAENSG00000103174.71259.55150825.666900.6092010.340609.41390HepG2PTBP1
NAGPAENSG00000103174.71347.84970874.980800.623208.207607.25360HepG2PUF60
NAGPAENSG00000103174.71511.05840928.868200.7019019.8946018.59850HepG2PUM1
NAGPAENSG00000103174.71648.031601131.718300.5421011.3618010.25840HepG2PUS1
NAGPAENSG00000103174.71084.98340894.237300.278802.135701.57510HepG2QKI
NAGPAENSG00000103174.7984.53750562.323500.807903.779702.53680HepG2RCC2
NAGPAENSG00000103174.71020.36750855.812500.253602.097401.55120HepG2RECQL
NAGPAENSG00000103174.7676.57970529.592500.353302.181901.62940HepG2RPS19
NAGPAENSG00000103174.7647.79670361.813000.840206.312705.10870HepG2RPS3A
NAGPAENSG00000103174.7305.91120685.94710-1.165002.935101.36660HepG2RTF1
NAGPAENSG00000103174.7723.78670531.413700.445602.397701.52050HepG2SERBP1
NAGPAENSG00000103174.72097.674201194.496100.812308.275607.06020HepG2SF3A3
NAGPAENSG00000103174.71429.29100859.642400.7334015.4187014.19430HepG2SF3B4
NAGPAENSG00000103174.71073.19240839.047000.355004.357503.50580HepG2SLBP
NAGPAENSG00000103174.71161.27480569.347801.0282020.3278018.82910HepG2SMN1
NAGPAENSG00000103174.7963.507001632.51890-0.7607013.2534012.37410HepG2SRFBP1
NAGPAENSG00000103174.7362.56240766.90090-1.0808010.287208.25180HepG2SRSF3
NAGPAENSG00000103174.71600.64150863.960900.8895025.1415023.52810HepG2SRSF5
NAGPAENSG00000103174.71149.32800982.523200.226102.303901.72630HepG2SUCLG1
NAGPAENSG00000103174.7571.36400806.48590-0.497204.253803.58120HepG2TAF15
NAGPAENSG00000103174.71102.73680701.943100.651607.034205.95090HepG2TARDBP
NAGPAENSG00000103174.7714.71260471.292000.600603.090402.03900HepG2TFIP11
NAGPAENSG00000103174.71540.32380532.673901.5318026.3150025.06750HepG2TIAL1
NAGPAENSG00000103174.7920.95900537.493600.7768014.4948013.34680HepG2TRIM56
NAGPAENSG00000103174.71222.72790854.880300.516202.984402.07200HepG2TUFM
NAGPAENSG00000103174.71697.46780969.836400.8075010.895109.62780HepG2U2AF1
NAGPAENSG00000103174.71191.41960543.234901.132903.780102.61540HepG2U2AF2
NAGPAENSG00000103174.71316.22540904.917500.540403.663102.69300HepG2UBE2L3
NAGPAENSG00000103174.7655.94650415.353100.659104.781803.77860HepG2UCHL5
NAGPAENSG00000103174.71258.714101059.333500.248702.556001.88060HepG2UPF1
NAGPAENSG00000103174.71198.28650643.678800.896505.419803.98580HepG2UPF2
NAGPAENSG00000103174.71372.861301088.860800.334303.884802.66420HepG2UTP18
NAGPAENSG00000103174.7458.95240324.088000.501902.419501.40440HepG2XPO5
NAGPAENSG00000103174.71472.691701165.066800.337905.272404.57910HepG2ZNF622
NAGPAENSG00000103174.7505.59670190.721701.406408.772807.82350K562AQR
NAGPAENSG00000103174.7193.62870269.53520-0.477202.383801.48000K562CELF1
NAGPAENSG00000103174.7124.4185063.245200.976102.840102.00810K562EIF4A3
NAGPAENSG00000103174.7183.5691065.771701.4807010.030508.96310K562FXR1
NAGPAENSG00000103174.74.9623020.75300-2.064202.236401.61060K562G3BP2
NAGPAENSG00000103174.7332.64230216.940100.616603.520002.67010K562GRSF1
NAGPAENSG00000103174.7134.6687047.601401.500208.267106.77670K562MAGOH
NAGPAENSG00000103174.7149.0538079.255800.911103.352502.52360K562PRPF8
NAGPAENSG00000103174.7105.2920046.253401.186704.959404.09430K562PTBP1
NAGPAENSG00000103174.7345.15760239.105000.529502.256701.52080K562PUF60
NAGPAENSG00000103174.7114.6008044.310001.370806.301704.96410K562RBM22
NAGPAENSG00000103174.7172.33150105.767500.704202.857201.75700K562SAFB
NAGPAENSG00000103174.761.2152021.612001.502004.435403.34230K562SF3B4
NAGPAENSG00000103174.7107.0832045.352301.239404.668103.75440K562SRSF1
NAGPAENSG00000103174.7189.05540119.058300.667002.989802.13190K562SYNCRIP
NAGPAENSG00000103174.7110.3952045.881101.266605.187804.20230K562TARDBP
NAGPAENSG00000103174.7105.74760166.88500-0.658202.750901.87570K562WDR3
NAGPAENSG00000103174.7133.28210214.90500-0.689202.453401.64930K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NAGPA is not available on ENCORE database.





18 RBPs can affect the splicing of NAGPA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENAGPAENSG00000103174.7chr16-507784650778945077278507738050779805078186-0.243000.000000.00000excludedHepG2U2AF1
SENAGPAENSG00000103174.7chr16-5082991508315650817455081885508327350833390.062000.000360.00595includedHepG2U2AF2
SENAGPAENSG00000103174.7chr16-507784650778945077278507738050779805078186-0.288000.000000.00000excludedHepG2U2AF2
SENAGPAENSG00000103174.7chr16-5078297507839950779805078186507888050790090.112000.000000.00026includedHepG2SRSF1
SENAGPAENSG00000103174.7chr16-507727850773805077135507719950778465077894-0.051000.000180.00766excludedHepG2SF3A3
A3SSNAGPAENSG00000103174.7chr16-507713550773805077135507719950778465077851-0.073000.001380.09139shorterHepG2SF3A3
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.087000.007560.09895includedHepG2PCBP2
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.110000.000000.00001includedHepG2SF3A3
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.256000.000000.00000includedHepG2PRPF8
RINAGPAENSG00000103174.7chr16-507713550773805077135507719950772785077380-0.208000.000010.00681excludedHepG2GRSF1
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.095000.001640.02313includedHepG2PCBP1
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.097000.002290.02389includedHepG2TAF15
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.064000.000540.00681includedHepG2U2AF1
RINAGPAENSG00000103174.7chr16-507713550773805077135507719950772785077380-0.092000.000250.07827excludedHepG2NOLC1
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.137000.000020.00028includedHepG2SF3B4
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.204000.000000.00004includedHepG2FUBP3
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.335000.000000.00000includedHepG2RBM22
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.564000.000010.00008includedK562AQR
RINAGPAENSG00000103174.7chr16-5077135507738050771355077199507727850773800.122000.000620.02744includedHepG2XRN2
MXENAGPAENSG00000103174.7chr16-507888050790095080385508049450779805078186508174550818850.158000.001920.039391includedHepG2SRSF1
MXENAGPAENSG00000103174.7chr16-50788805079009508038550804945077980507818650817455081885-0.218000.000290.014172includedHepG2XRN2
MXENAGPAENSG00000103174.7chr16-50788805079009508038550804945077980507818650817455081885-0.227000.000040.001762includedHepG2DDX55
MXENAGPAENSG00000103174.7chr16-50772785077380507784650778945077135507719950779805078186-0.083000.020130.093132includedHepG2U2AF2
MXENAGPAENSG00000103174.7chr16-50788805079009508038550804945077980507818650817455081885-0.160000.001540.050242includedHepG2SUPV3L1
MXENAGPAENSG00000103174.7chr16-508038550804945081745508188550789465079009508334150836440.108000.001310.092461includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NAGPA is not avaliable on ENCORE database.