MSH5-SAPCD1

General Information

Gene Name       : MSH5-SAPCD1
Gene ID             : ENSG00000255152.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MSH5-SAPCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MSH5-SAPCD1ENSG00000255152.84.606.045.32ENCSR000AEF
HepG2MSH5-SAPCD1ENSG00000255152.83.323.443.38ENCSR985KAT
K562MSH5-SAPCD1ENSG00000255152.810.1312.4211.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MSH5-SAPCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MSH5-SAPCD1 RNA is bound by 43 proteins.  







eCLIP assay for MSH5-SAPCD1 is not avaliable on ENCORE database.





43 proteins are bound to MSH5-SAPCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63172989131729940+3'-UTR,CDS3.6143611.75786K562U2AF2
chr63172992331729962+3'-UTR,CDS3.772819.74534HepG2BCLAF1
chr63173220831732248+3'-UTR,CDS,intron-Proximal4.814768.42748K562ZC3H11A
chr63172992331729964+3'-UTR,CDS,intron-Proximal3.406569.43382K562GRWD1
chr63173066431730709+3'-UTR,5'-UTR,intron-Distal3.289339.03739K562UCHL5
chr63173214131732181+3'-UTR,intron-Proximal3.110225.89932K562ZNF622
chr63173221331732249+3'-UTR,CDS3.495085.48341K562GRWD1
chr63173075931730879+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.146648.27991K562FUS
chr63173077631730813+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.521919.12920K562UCHL5
chr63173118431731241+3'-UTR,5'-UTR,CDS,intron-Proximal3.166473.56062K562U2AF2
chr63173220331732237+3'-UTR,CDS,intron-Proximal4.9002113.49179K562DDX24
chr63173207831732132+3'-UTR,CDS,intron-Distal,intron-Proximal4.1894816.49077K562DDX24
chr63173252631732596+3'-UTR5.8124915.02445HepG2ZC3H11A
chr63173056231730587+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.221073.63681K562RBM15
chr63173250931732592+3'-UTR4.9906014.07881K562ZC3H11A
chr63173206731732116+3'-UTR,CDS,intron-Distal,intron-Proximal3.3783314.01110K562UCHL5
chr63173031831730343+3'-UTR,5'-UTR3.4575114.38051K562DDX24
chr63173128731731327+3'-UTR,5'-UTR,CDS3.635663.59112HepG2PPIG
chr63173220931732274+3'-UTR,CDS,intron-Proximal3.9676618.73902K562UCHL5
chr63173213931732179+3'-UTR,intron-Proximal3.549029.75562K562UCHL5
chr63173085031730936+3'-UTR,CDS,intron-Distal3.2914211.80956K562DDX24
chr63172982931729941+3'-UTR,CDS,intron-Proximal4.6771914.47562HepG2U2AF2
chr63173075031730825+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.125093.19171K562U2AF2
chr63173019731730217+3'-UTR,CDS4.1944717.24948K562DDX24
chr63173078531730825+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.489987.11699K562SF3B4
chr63173076431730812+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.4409713.78939K562DDX24
chr63173076231730827+3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.5404313.55722K562EFTUD2
chr63173204231732132+3'-UTR,CDS,intron-Distal,intron-Proximal3.073646.27353HepG2GRWD1
chr63172988231729928+3'-UTR,CDS,intron-Proximal3.9591439.46759K562DDX24
chr63173237631732421+3'-UTR3.773823.58455K562U2AF2
chr63173021631730300+3'-UTR,CDS3.085064.88837HepG2PABPN1
chr63173019531730232+3'-UTR,CDS,intron-Proximal3.177547.24864K562GRWD1
chr63173091031730985+3'-UTR,CDS,intron-Distal,intron-Proximal4.1821614.90602HepG2PRPF8
chr63173025731730304+3'-UTR,CDS3.247036.58484K562RBM15
chr63173086831730999+3'-UTR,CDS,intron-Distal,intron-Proximal3.6881114.62331HepG2EFTUD2
chr63172989831729948+3'-UTR,CDS5.196666.76175HepG2PPIG
chr63173119931731236+3'-UTR,5'-UTR,CDS4.1643113.89500K562DDX24
chr63172991131729954+3'-UTR,CDS5.087308.93274K562SRSF1
chr63173119931731222+3'-UTR,5'-UTR,CDS3.001383.49427K562RBM15
chr63173118831731199+3'-UTR,5'-UTR,CDS,intron-Proximal3.586343.93112K562RBM15
chr63172983231729922+3'-UTR,CDS,intron-Proximal3.8578849.07111K562SF3B4
chr63173112331731228+3'-UTR,5'-UTR,CDS,intron-Proximal3.959928.97789HepG2EFTUD2
chr63173220031732275+3'-UTR,CDS,intron-Proximal4.602405.11295K562U2AF2
chr63172992831729962+3'-UTR,CDS3.5347819.72510K562DDX24
chr63173205331732094+3'-UTR,CDS,intron-Distal4.153344.25576HepG2PABPN1
chr63173025231730318+3'-UTR,5'-UTR,CDS3.6756535.76622K562DDX24
chr63173025731730301+3'-UTR,CDS3.232723.97831K562ZNF800
chr63173089931730926+3'-UTR,CDS,intron-Distal3.998275.80935K562ZNF622
chr63173093131730995+3'-UTR,CDS,intron-Distal,intron-Proximal3.7907632.60599K562PRPF8
chr63173219231732254+3'-UTR,CDS,intron-Proximal3.412844.69685K562FUS
chr63173021731730252+3'-UTR,CDS3.7186920.26392K562DDX24
chr63173211831732132+3'-UTR,CDS,intron-Proximal4.1800115.21824K562UCHL5
chr63173245531732506+3'-UTR4.698025.70989K562NOLC1
chr63170823331708262+5'-UTR,CDS4.989859.85896K562AQR
chr63172963531729733+3'-UTR,5'-UTR,CDS,intron-Proximal3.750855.82560HepG2PABPN1
chr63172963531729681+3'-UTR,5'-UTR,CDS,intron-Proximal3.788095.73400HepG2PPIG
chr63172959531729650+3'-UTR,5'-UTR,CDS,intron-Proximal3.790659.57266K562SRSF1
chr63172959231729674+3'-UTR,5'-UTR,CDS,intron-Proximal4.055443.14726K562SRSF7
chr63170820431708233+5'-UTR,intron-Proximal5.9898510.84943K562AQR
chr63170777731707834+5'-UTR4.545865.89060HepG2NCBP2
chr63171199231712071+CDS3.6486918.76078K562UCHL5
chr63172632631726374+3'-UTR,CDS,intron-Distal3.642054.73026K562SRSF1
chr63172896331728983+3'-UTR,CDS,intron-Proximal3.402118.11379K562BUD13
chr63170897231709058+CDS3.394476.84486K562LIN28B
chr63172605231726070+3'-UTR,CDS3.5693213.77091K562DDX24
chr63172786631727905+3'-UTR,CDS,intron-Proximal3.3097112.56700K562UCHL5
chr63172593431725990+3'-UTR,CDS,intron-Proximal3.1394821.97931K562DDX24
chr63172764031727659+3'-UTR,CDS3.586343.93112K562RBM15
chr63172654431726574+3'-UTR,CDS4.5482227.34743K562DDX24
chr63172663131726651+3'-UTR,CDS3.215568.83000K562UCHL5
chr63172590231726000+3'-UTR,5'-UTR,CDS,intron-Proximal3.8078567.34975K562AQR
chr63172115031721213+3'-UTR,5'-UTR,CDS3.8068322.83893K562DDX24
chr63172661131726632+3'-UTR,CDS4.6348927.34743K562DDX24
chr63172724831727274+3'-UTR,CDS3.024428.62157K562UCHL5
chr63172725831727282+3'-UTR,CDS4.0336524.96706K562DDX24
chr63172897231728986+3'-UTR,CDS4.4124019.10492K562U2AF2
chr63171516331715172+5'-UTR,CDS,intron-Proximal4.3372128.25002K562DDX24
chr63172764731727697+3'-UTR,CDS5.191187.35950HepG2PPIG
chr63170900931709055+CDS3.503954.06531HepG2GRWD1
chr63171068031710735+CDS,intron-Proximal5.4630714.42010HepG2PPIG
chr63170831731708391+CDS,intron-Proximal3.289927.33138HepG2BCLAF1
chr63171232031712358+5'-UTR,CDS,intron-Proximal4.7296749.97339K562DDX24
chr63172888031728977+3'-UTR,CDS,intron-Proximal4.1700128.26517K562SF3B4
chr63172924831729303+3'-UTR,CDS,intron-Proximal4.357244.07830K562SRSF1
chr63171232031712359+5'-UTR,CDS,intron-Proximal4.352509.09836HepG2BCLAF1
chr63171179931711866+CDS,intron-Proximal3.7323211.43407HepG2PRPF8
chr63172772131727750+3'-UTR,CDS4.5722520.06307K562DDX24
chr63172933531729377+3'-UTR,CDS3.1094710.00090K562ZNF622
chr63172758731727745+3'-UTR,CDS4.371078.96264HepG2PABPN1
chr63172786731727897+3'-UTR,CDS4.081073.84295K562GRWD1
chr63171516331715178+5'-UTR,CDS,intron-Proximal3.1186014.02072K562ZNF622
chr63171516231715218+5'-UTR,CDS,intron-Proximal3.5770511.77700HepG2PPIG
chr63171232231712343+5'-UTR,CDS,intron-Proximal3.7464818.48674K562ZNF622
chr63172893731728990+3'-UTR,CDS,intron-Proximal3.597218.89869K562SMNDC1
chr63170893731708973+CDS,intron-Proximal4.136515.24452HepG2PPIG
chr63171070531710731+CDS3.003516.86745K562UCHL5
chr63171088431710915+CDS,intron-Proximal5.8400612.79146K562DDX24
chr63172770531727745+3'-UTR,CDS5.192756.16445HepG2PPIG
chr63170835731708419+CDS,intron-Proximal4.648515.93128HepG2PRPF8
chr63170889331708958+CDS,intron-Proximal3.5300810.20293K562SF3B4
chr63172719331727244+3'-UTR,CDS,intron-Proximal4.6066350.49281K562DDX24
chr63172901931729036+3'-UTR,CDS4.7147914.05902K562DDX24
chr63172924931729297+3'-UTR,CDS5.0009426.30681K562DDX24
chr63172856531728616+3'-UTR,CDS,intron-Distal4.2199130.27410K562DDX24
chr63171199431712070+CDS4.0214625.65647K562ZNF622
chr63172857931728608+3'-UTR,CDS,intron-Distal3.780455.99043HepG2GRWD1
chr63172693331727002+3'-UTR,CDS,intron-Proximal3.2693820.16342K562ZNF622
chr63171202231712069+CDS4.8216411.68917HepG2PPIG
chr63172637931726398+3'-UTR,CDS,intron-Distal,intron-Proximal4.470446.08299HepG2PPIG
chr63171190231711976+CDS,intron-Proximal3.0501617.68666K562SF3B4
chr63172711031727222+3'-UTR,CDS,intron-Proximal3.6631223.18125K562SF3B4
chr63170892431708971+CDS,intron-Proximal3.546465.09803K562GPKOW
chr63171067931710721+CDS3.0459110.62064K562ZNF622
chr63172719331727235+3'-UTR,CDS,intron-Proximal3.2938312.79019K562AQR
chr63170890831708968+CDS,intron-Proximal5.4653235.62569K562AQR
chr63170890931708969+CDS,intron-Proximal3.624753.67894HepG2AQR
chr63170826531708307+CDS3.190929.72347K562ZNF622
chr63171201131712077+CDS,intron-Proximal4.6414052.81539K562DDX24
chr63172637631726397+3'-UTR,CDS,intron-Distal3.4720413.93026K562ZNF622
chr63171232331712344+5'-UTR,CDS3.4186512.50248K562UCHL5
chr63172638331726395+3'-UTR,CDS,intron-Distal4.7851015.20984K562DDX24
chr63171068931710731+CDS6.0707324.37980K562DDX24
chr63172895031728996+3'-UTR,CDS,intron-Proximal3.527885.03700K562U2AF1
chr63172687431726949+3'-UTR,CDS4.2923752.27108K562DDX24
chr63171189631711964+CDS,intron-Proximal3.673526.90628HepG2SF3A3
chr63172694031727046+3'-UTR,CDS,intron-Proximal4.3691122.99796K562EFTUD2
chr63172898631728996+3'-UTR,CDS3.648558.94654K562U2AF2
chr63172694031726986+3'-UTR,CDS,intron-Proximal4.398057.62267K562SRSF1
chr63172719531727238+3'-UTR,CDS,intron-Proximal3.8431414.68801K562UCHL5
chr63172894931728999+3'-UTR,CDS,intron-Proximal4.151576.44495HepG2U2AF2
chr63172632431726378+3'-UTR,CDS,intron-Distal,intron-Proximal4.3522226.40902K562DDX24
chr63171234331712358+5'-UTR,CDS3.4731016.42270K562ZNF622
chr63172134431721403+3'-UTR,CDS3.1756512.69450K562DDX24
chr63172603031726070+3'-UTR,CDS4.551129.28243HepG2PPIG
chr63172764131727699+3'-UTR,CDS3.109565.20161K562MTPAP
chr63172632331726358+3'-UTR,CDS,intron-Distal,intron-Proximal4.015936.70085HepG2PPIG
chr63172763731727690+3'-UTR,CDS3.979809.11581K562SRSF1
chr63172137331721429+3'-UTR,CDS,intron-Proximal4.031284.16174HepG2PRPF8
chr63172654231726573+3'-UTR,CDS,intron-Proximal3.5101114.81161K562ZNF622
chr63170893731708963+CDS,intron-Proximal3.8929410.95347K562BUD13
chr63171520231715274+5'-UTR,CDS,intron-Proximal3.1689820.60452K562HNRNPL
chr63171196331711987+CDS,intron-Proximal3.6271020.24655K562DDX24
chr63172657431726611+3'-UTR,CDS4.2654834.23523K562DDX24
chr63171517231715201+5'-UTR,CDS4.1851438.59383K562DDX24
chr63172764131727695+3'-UTR,CDS3.391108.53142K562UCHL5
chr63172663231726652+3'-UTR,CDS4.4402623.11713K562DDX24
chr63172847731728514+3'-UTR,CDS,intron-Distal,intron-Proximal3.161098.39218K562UCHL5
chr63172896431728984+3'-UTR,CDS,intron-Proximal4.3618019.53768K562DDX24
chr63172765931727723+3'-UTR,CDS3.542087.79680K562RBM15
chr63171516331715215+5'-UTR,CDS,intron-Proximal3.412336.78387K562SRSF1
chr63171177831711802+CDS3.1435311.49281K562DDX24
chr63172721131727286+3'-UTR,CDS4.5159311.01413HepG2PPIG
chr63172657331726631+3'-UTR,CDS3.4303822.33826K562ZNF622
chr63171166431711694+CDS,intron-Proximal4.612843.31221K562U2AF1
chr63172635031726376+3'-UTR,CDS,intron-Distal3.8166816.47696K562ZNF622
chr63171195931712043+CDS,intron-Proximal3.158674.70373K562SRSF1
chr63172654331726631+3'-UTR,CDS3.3337924.06408K562UCHL5
chr63172786631727888+3'-UTR,CDS,intron-Proximal3.974704.41267HepG2PPIG
chr63172934531729378+3'-UTR,CDS4.7182719.62313K562DDX24
chr63171167531711709+CDS,intron-Proximal3.914848.05393HepG2U2AF2
chr63171520131715209+5'-UTR,CDS4.6186932.70549K562DDX24
chr63172655331726616+3'-UTR,CDS3.432076.45347HepG2GRWD1
chr63172110631721184+3'-UTR,5'-UTR,CDS3.047983.53842K562SRSF7
chr63172724631727289+3'-UTR,CDS3.0464014.81531K562ZNF622
chr63172850131728539+3'-UTR,CDS,intron-Distal,intron-Proximal4.6925621.44580K562DDX24
chr63172723931727296+3'-UTR,CDS,intron-Proximal3.635393.24881HepG2SRSF1
chr63172895131728972+3'-UTR,CDS,intron-Proximal5.0536220.89694K562U2AF2
chr63172971131729728+3'-UTR,CDS,intron-Proximal4.3446515.25586K562DDX24
chr63172786731727903+3'-UTR,CDS3.489954.06531HepG2GRWD1
chr63171167131711721+CDS,intron-Proximal5.7088913.26681K562U2AF2
chr63171232331712359+5'-UTR,CDS,intron-Proximal3.662329.30518HepG2PPIG
chr63172710231727238+3'-UTR,CDS,intron-Proximal3.2412218.44273K562EFTUD2
chr63170825831708329+CDS3.892334.01646HepG2SRSF1
chr63172594431725993+3'-UTR,CDS4.599558.38781HepG2PPIG
chr63171088331710909+CDS,intron-Proximal4.347417.49899HepG2PPIG
chr63172799231728010+3'-UTR,CDS,intron-Proximal4.8116812.86643K562AQR
chr63172596231726003+3'-UTR,CDS3.453564.91393K562SRSF1
chr63172107731721088+3'-UTR,5'-UTR,CDS,intron-Proximal4.0707321.08649K562DDX24
chr63172786831727885+3'-UTR,CDS3.1834911.33573K562DDX24
chr63171292931713048+CDS,intron-Distal,intron-Proximal4.103376.73065K562HNRNPK
chr63171062631710674+CDS,intron-Proximal4.1333016.24867K562AQR
chr63172654131726616+3'-UTR,CDS,intron-Proximal4.2131513.07265HepG2PPIG
chr63171104031711128+intron-Distal,intron-Proximal4.280158.02555HepG2PCBP2
chr63172097231721002+intron-Distal,intron-Proximal4.1424812.89472HepG2HNRNPL
chr63170986931709926+intron-Distal3.340703.27276HepG2HNRNPL
chr63170916631709190+intron-Distal3.9049211.53060K562AGGF1
chr63173101531731092+intron-Distal,intron-Proximal3.404426.34474K562EFTUD2
chr63171972831719779+intron-Distal3.634517.97069K562ILF3
chr63171543431715491+intron-Distal3.3292518.05564K562HNRNPL
chr63171712531717185+intron-Distal3.6706110.08683K562ILF3
chr63172814731728200+intron-Distal4.258384.66841K562HNRNPL
chr63172359931723644+intron-Distal4.5268210.68324K562PTBP1
chr63171703031717066+intron-Distal4.229787.56833K562ILF3
chr63171002631710076+intron-Distal3.415975.12846K562HNRNPL
chr63171114031711199+intron-Distal3.628307.57836K562HNRNPK
chr63171702831717151+intron-Distal3.508284.51399HepG2ILF3
chr63170918231709205+intron-Distal4.185877.05160K562PRPF8
chr63172364431723704+intron-Distal4.3137312.95894K562PTBP1
chr63171653431716631+intron-Distal5.217557.43678HepG2DDX59
chr63172836331728456+intron-Distal,intron-Proximal3.111623.20049K562HNRNPK
chr63171812131718169+intron-Distal3.595433.08967K562KHDRBS1
chr63172546231725521+5'-UTR,intron-Distal3.910433.61897HepG2HNRNPC
chr63171945331719496+intron-Distal,intron-Proximal3.279007.83196K562ILF3
chr63171528831715401+intron-Distal,intron-Proximal3.4941224.75562K562AGGF1
chr63172093331720946+intron-Distal3.8011341.07991K562HNRNPL
chr63172066831720721+intron-Distal3.7479028.01788K562HNRNPL
chr63172809731728222+intron-Distal3.272204.90594K562HNRNPK
chr63171095631711050+intron-Distal,intron-Proximal4.266108.29740HepG2TIAL1
chr63172091731720933+intron-Distal3.7765238.49890K562HNRNPL
chr63172068331720777+intron-Distal3.6862217.53112HepG2HNRNPL
chr63173173531731777+intron-Distal,intron-Proximal3.699374.91585K562RBFOX2
chr63172072231720774+intron-Distal4.2201033.40969K562HNRNPL
chr63172741031727454+intron-Distal4.644334.40618K562PTBP1
chr63172094631721026+intron-Distal,intron-Proximal3.7850650.95817K562HNRNPL
chr63171528831715315+intron-Distal,intron-Proximal3.5226923.12316K562HNRNPL
chr63171540431715434+intron-Distal3.5137412.86816K562HNRNPL
chr63172820031728275+intron-Distal3.984643.80299K562HNRNPL
chr63171531531715404+intron-Distal3.5696028.43100K562HNRNPL
chr63171105331711140+intron-Distal5.0776115.04881K562HNRNPK
chr63172088831720917+intron-Distal3.2840229.89395K562HNRNPL
chr63172087331720972+intron-Distal4.2478627.87309HepG2HNRNPL
chr63172704631727102+intron-Distal,intron-Proximal3.912678.13137K562EFTUD2
chr63170916631709192+intron-Distal4.7286514.59846K562HNRNPL
chr63170919031709205+intron-Distal3.8311810.96887K562AGGF1
chr63171450431714650+intron-Distal3.669103.21749K562HNRNPC
chr63170985631709932+intron-Distal3.343813.90949K562HNRNPL
chr63171096631711053+intron-Distal,intron-Proximal3.3072810.91006K562HNRNPK
chr63171102031711054+intron-Distal,intron-Proximal3.735725.45902K562TIA1
chr63170919231709205+intron-Distal4.6210713.45737K562HNRNPL
chr63171529031715364+intron-Distal,intron-Proximal3.5722310.09908HepG2HNRNPL
chr63173141631731469+intron-Distal,intron-Proximal3.932093.59342K562CSTF2T
chr63170916931709182+intron-Distal5.212108.12400K562PRPF8
chr63171770731717759+intron-Distal3.881644.24164HepG2DDX59
chr63171743331717556+intron-Distal3.529375.02497HepG2DDX59
chr63172695431726963+intron-Proximal3.4701912.03964K562AQR
chr63172717631727194+intron-Proximal4.2787311.53679K562BUD13
chr63172100231721012+intron-Proximal3.678974.88761HepG2HNRNPL
chr63171523231715290+intron-Proximal4.0643111.99290HepG2HNRNPL
chr63172717931727193+intron-Proximal3.523177.36655K562AQR
chr63172844531728463+intron-Distal,intron-Proximal4.300456.99120K562AQR
chr63171164931711675+intron-Proximal4.323898.26514HepG2U2AF2
chr63172713331727176+intron-Proximal3.464009.07794K562BUD13
chr63170840731708443+intron-Proximal5.3053326.58915K562AQR
chr63170844331708473+intron-Proximal3.9827014.67295K562AQR
chr63172841731728457+intron-Distal,intron-Proximal5.112936.90654K562SF3B4
chr63172588531725940+5'-UTR,CDS,intron-Proximal4.264777.72529HepG2SF3B4
chr63172121631721235+intron-Proximal3.462665.11245K562AQR
chr63171185031711893+intron-Proximal3.9497012.48238K562SF3B4
chr63172982031729887+intron-Proximal4.618986.54100K562PCBP1
chr63171208531712117+intron-Proximal5.687128.34710K562AQR
chr63172696731727012+intron-Proximal4.909044.02817HepG2PRPF8
chr63171236631712386+intron-Proximal5.049856.22530K562AQR
chr63172141031721444+3'-UTR,intron-Proximal5.7055559.99935K562AQR
chr63172801031728035+intron-Proximal5.5386715.34985K562AQR
chr63171509431715141+intron-Proximal3.224377.53330K562HNRNPL
chr63171510731715132+intron-Proximal3.456668.18279K562SF3B4
chr63171527431715288+intron-Proximal3.4166116.64285K562HNRNPL
chr63172712231727186+intron-Proximal4.014103.27601HepG2RBM5
chr63172124731721323+intron-Proximal3.092025.95276K562GTF2F1
chr63170843931708484+intron-Proximal3.967257.84941K562EFTUD2
chr63172144431721467+3'-UTR,intron-Proximal5.9148649.60417K562AQR
chr63172711631727195+intron-Proximal5.1576133.50393K562UCHL5
chr63172102631721077+intron-Proximal3.330587.66825K562HNRNPL
chr63172987631729887+intron-Proximal3.366379.05538K562U2AF2
chr63172696331726997+intron-Proximal3.5297015.87170K562AQR
chr63172729731727329+intron-Proximal5.314047.28294K562AQR
chr63170784031707892+5'-UTR,intron-Proximal4.945569.04436K562AQR
chr63171181831711892+intron-Proximal3.040976.00860K562SMNDC1
chr63172713331727193+intron-Proximal3.6508427.33890K562DDX24
chr63172140631721409+3'-UTR,intron-Proximal5.6191146.76133K562AQR
chr63170892631708937+intron-Proximal3.234306.76988K562BUD13
chr63171096631711020+intron-Proximal4.5975213.48168K562TIA1
chr63170839931708407+intron-Proximal4.8361412.86643K562AQR
chr63171166231711671+intron-Proximal5.3339710.10245K562U2AF2
chr63172624131726323+CDS,intron-Distal,intron-Proximal6.3980514.61799K562EFTUD2
chr63172624731726297+intron-Distal,intron-Proximal4.064156.08301HepG2EFTUD2
chr63172126631721314+intron-Proximal3.327977.22778K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MSH5-SAPCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MSH5-SAPCD1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of MSH5-SAPCD1.  








The Knockdown/knockout RNA-Seq assay for MSH5-SAPCD1 is not available on ENCORE database.





69 RBPs can affect the gene expression of MSH5-SAPCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MSH5-SAPCD1ENSG00000255152.440.36530208.86390-2.371402.113901.64230HepG2AKAP1
MSH5-SAPCD1ENSG00000255152.416.2426064.88880-1.998202.974302.17650HepG2CALR
MSH5-SAPCD1ENSG00000255152.419.76940164.16230-3.053803.082102.26790HepG2CIRBP
MSH5-SAPCD1ENSG00000255152.4103.2679041.491301.315404.720003.84250HepG2CPSF6
MSH5-SAPCD1ENSG00000255152.4128.31040354.37580-1.465607.372306.41890HepG2CELF1
MSH5-SAPCD1ENSG00000255152.4126.59690198.21980-0.646902.130901.52680HepG2DDX21
MSH5-SAPCD1ENSG00000255152.424.98330172.00280-2.783402.606002.00630HepG2DDX6
MSH5-SAPCD1ENSG00000255152.4130.03920198.06680-0.607002.146401.33380HepG2EEF2
MSH5-SAPCD1ENSG00000255152.4177.29430360.08520-1.022208.055706.69520HepG2EIF4G2
MSH5-SAPCD1ENSG00000255152.4276.7976074.710301.889406.720505.52600HepG2FUBP3
MSH5-SAPCD1ENSG00000255152.4370.30960181.579801.028002.879101.96580HepG2G3BP2
MSH5-SAPCD1ENSG00000255152.462.13650143.16800-1.204202.927102.00390HepG2GEMIN5
MSH5-SAPCD1ENSG00000255152.4201.21530347.00000-0.786204.318903.49010HepG2HNRNPL
MSH5-SAPCD1ENSG00000255152.461.86730217.60030-1.814403.864501.85730HepG2LSM11
MSH5-SAPCD1ENSG00000255152.4135.4029045.761801.564904.343403.11460HepG2MTPAP
MSH5-SAPCD1ENSG00000255152.483.1742039.799701.063302.789902.03830HepG2NSUN2
MSH5-SAPCD1ENSG00000255152.4442.06830168.767501.389106.735505.61670HepG2PABPC4
MSH5-SAPCD1ENSG00000255152.4223.86480163.136400.456401.924501.40310HepG2PCBP1
MSH5-SAPCD1ENSG00000255152.467.13980234.66720-1.805403.948402.71520HepG2PCBP2
MSH5-SAPCD1ENSG00000255152.427.72650123.63140-2.156702.351201.66680HepG2PPIL4
MSH5-SAPCD1ENSG00000255152.431.95860106.14420-1.731702.945302.11360HepG2PRPF8
MSH5-SAPCD1ENSG00000255152.499.86840360.63040-1.8524021.7165020.25810HepG2PUF60
MSH5-SAPCD1ENSG00000255152.4216.50630382.85160-0.822408.201007.29320HepG2PUM1
MSH5-SAPCD1ENSG00000255152.4188.56820382.55540-1.020601.958601.38820HepG2PUM2
MSH5-SAPCD1ENSG00000255152.4315.31900179.798200.810303.631402.93010HepG2QKI
MSH5-SAPCD1ENSG00000255152.469.13460226.51570-1.712106.894005.80710HepG2RAVER1
MSH5-SAPCD1ENSG00000255152.4351.80800172.027301.032109.527408.48490HepG2RECQL
MSH5-SAPCD1ENSG00000255152.439.69110156.45250-1.9788012.6136011.41530HepG2RPS19
MSH5-SAPCD1ENSG00000255152.419.63330104.98420-2.418803.829202.92230HepG2RRP9
MSH5-SAPCD1ENSG00000255152.420.77860203.74220-3.293609.152607.87010HepG2SF3A3
MSH5-SAPCD1ENSG00000255152.443.84780180.39250-2.040607.083806.40990HepG2SRSF1
MSH5-SAPCD1ENSG00000255152.495.81300356.10170-1.894008.965007.92410HepG2SRSF5
MSH5-SAPCD1ENSG00000255152.493.37110404.95860-2.1167013.1025011.91480HepG2SUCLG1
MSH5-SAPCD1ENSG00000255152.48.0162091.88180-3.518806.141504.75310HepG2TFIP11
MSH5-SAPCD1ENSG00000255152.4370.50240148.993301.314102.883202.03130HepG2TIA1
MSH5-SAPCD1ENSG00000255152.459.71810373.00010-2.6429026.2720023.79660HepG2UBE2L3
MSH5-SAPCD1ENSG00000255152.4156.90080249.05250-0.666602.552701.53920HepG2XRCC6
MSH5-SAPCD1ENSG00000255152.4260.34560134.982400.947602.817002.08650HepG2XRN2
MSH5-SAPCD1ENSG00000255152.41681.466801982.42290-0.237502.311901.78510K562AGGF1
MSH5-SAPCD1ENSG00000255152.41606.644102062.81940-0.360603.153802.45550K562AKAP8L
MSH5-SAPCD1ENSG00000255152.41007.654201630.19710-0.694003.116002.50020K562AQR
MSH5-SAPCD1ENSG00000255152.4988.791101169.57670-0.242202.056101.48050K562DDX47
MSH5-SAPCD1ENSG00000255152.41874.853502219.62540-0.243502.419201.60810K562DKC1
MSH5-SAPCD1ENSG00000255152.4365.57060798.71960-1.127506.649205.18640K562EFTUD2
MSH5-SAPCD1ENSG00000255152.4407.34570854.85610-1.069405.505103.97750K562EIF3D
MSH5-SAPCD1ENSG00000255152.4499.64390752.63410-0.591006.873005.63100K562EIF3G
MSH5-SAPCD1ENSG00000255152.4656.93300913.15900-0.475102.747402.04370K562G3BP2
MSH5-SAPCD1ENSG00000255152.4812.685701110.92180-0.451002.883002.02420K562MAGOH
MSH5-SAPCD1ENSG00000255152.41962.115602452.35630-0.321803.068802.10250K562MBNL1
MSH5-SAPCD1ENSG00000255152.41671.467402090.41960-0.322702.798801.66310K562MSI2
MSH5-SAPCD1ENSG00000255152.41050.62900806.015500.382304.486103.47770K562MTPAP
MSH5-SAPCD1ENSG00000255152.41131.62240895.494500.337504.120403.22960K562NSUN2
MSH5-SAPCD1ENSG00000255152.4474.60910988.31520-1.0582010.458908.50330K562PCBP2
MSH5-SAPCD1ENSG00000255152.41963.838901313.894900.579704.595202.50150K562PKM
MSH5-SAPCD1ENSG00000255152.4572.65770936.65140-0.709803.621701.46790K562PRPF6
MSH5-SAPCD1ENSG00000255152.4246.36550777.25450-1.6576010.859109.36000K562PRPF8
MSH5-SAPCD1ENSG00000255152.41051.03400738.856300.508302.920201.98650K562PSIP1
MSH5-SAPCD1ENSG00000255152.4756.321301079.38330-0.513102.703602.04650K562PTBP1
MSH5-SAPCD1ENSG00000255152.41243.355002139.81580-0.7832010.881909.24870K562PUF60
MSH5-SAPCD1ENSG00000255152.41453.149302045.61860-0.493404.695004.01130K562PUS1
MSH5-SAPCD1ENSG00000255152.41492.809801993.25680-0.417105.218004.42670K562RBM15
MSH5-SAPCD1ENSG00000255152.41427.397201071.915300.413103.982302.05390K562RBM17
MSH5-SAPCD1ENSG00000255152.4683.749501034.61040-0.597504.916403.75610K562RBM22
MSH5-SAPCD1ENSG00000255152.4529.17640866.80870-0.712006.931504.72300K562RBM25
MSH5-SAPCD1ENSG00000255152.4511.01090791.48130-0.631202.243701.51210K562RPS19
MSH5-SAPCD1ENSG00000255152.4437.54280618.54980-0.499503.390102.18830K562SAFB
MSH5-SAPCD1ENSG00000255152.4163.90050384.35850-1.2296010.040308.10440K562SF3B1
MSH5-SAPCD1ENSG00000255152.4513.71000950.16180-0.8872010.556408.83440K562SF3B4
MSH5-SAPCD1ENSG00000255152.41143.97670905.393800.337304.195803.06800K562SRPK2
MSH5-SAPCD1ENSG00000255152.4646.177901058.23550-0.711702.710802.01020K562SRSF1
MSH5-SAPCD1ENSG00000255152.4426.59190696.39710-0.707105.168004.03800K562SYNCRIP
MSH5-SAPCD1ENSG00000255152.4525.67720885.86430-0.752906.709504.85560K562U2AF1
MSH5-SAPCD1ENSG00000255152.4432.91670914.67060-1.0792015.2464013.32990K562U2AF2
MSH5-SAPCD1ENSG00000255152.41192.35130949.516600.328403.844903.01010K562UPF1
MSH5-SAPCD1ENSG00000255152.41086.87840817.846200.410202.812301.60090K562UTP3
MSH5-SAPCD1ENSG00000255152.41059.35930812.463500.382703.059202.14140K562WDR3
MSH5-SAPCD1ENSG00000255152.4513.62120882.28110-0.780504.110502.09560K562XRCC6
MSH5-SAPCD1ENSG00000255152.4505.59500740.62130-0.550803.349101.31480K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MSH5-SAPCD1 is not available on ENCORE database.





4 RBPs can affect the splicing of MSH5-SAPCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMSH5-SAPCD1ENSG00000255152.4chr6+317305663173094531730196317303473173119131731327-0.268000.000360.00720excludedK562PUS1
A3SSMSH5-SAPCD1ENSG00000255152.4chr6+3172952631729642317295943172964231729248317293920.221000.000100.00555longerK562U2AF2
MXEMSH5-SAPCD1ENSG00000255152.4chr6+31729526317296423172964231729732317292483172939231729888317299620.208000.000710.015181includedK562U2AF1
MXEMSH5-SAPCD1ENSG00000255152.4chr6+3172952631729642317296423172973231729248317293923172988831729962-0.078000.006570.084502includedK562PUS1
MXEMSH5-SAPCD1ENSG00000255152.4chr6+3172952631729642317296423172973231729248317293923172988831729962-0.185000.000080.001002includedK562AQR
MXEMSH5-SAPCD1ENSG00000255152.4chr6+31729526317296423172964231729732317292483172939231729888317299620.276000.000770.012721includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MSH5-SAPCD1 is not avaliable on ENCORE database.