MRPL39

General Information

Gene Name       : MRPL39
Gene ID             : ENSG00000154719.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: MRPL39)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MRPL39ENSG00000154719.1375.6874.4375.06ENCSR000AEF
HepG2MRPL39ENSG00000154719.1334.8462.4248.63ENCSR985KAT
K562MRPL39ENSG00000154719.1361.2864.5062.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MRPL39 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MRPL39 RNA is bound by 6 proteins.  







eCLIP assay for MRPL39 is not avaliable on ENCORE database.





6 proteins are bound to MRPL39 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr212697971326979789-5'-UTR,CDS,intron-Distal4.8596816.82549K562DDX3X
chr212697889426978966-CDS,intron-Distal4.0500510.17596K562DDX3X
chr212697876826978849-CDS,intron-Distal3.080313.39306HepG2GRWD1
chr212696957026969594-intron-Distal,intron-Proximal4.035845.26367K562AQR
chr212697672126976801-intron-Distal3.724583.45805K562KHSRP
chr212696236226962466-intron-Distal3.939644.67922K562PTBP1
chr212697760726977742-intron-Distal3.879233.60944K562TARDBP
chr212697197626972084-intron-Distal,intron-Proximal3.573485.35459K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MRPL39 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MRPL39 is not available on ENCORE database.

  • 81 RBPs can affect the levels of MRPL39.  








The Knockdown/knockout RNA-Seq assay for MRPL39 is not available on ENCORE database.





81 RBPs can affect the gene expression of MRPL39 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MRPL39ENSG00000154719.9565.27300466.494900.277001.926501.40190HepG2ACO1
MRPL39ENSG00000154719.9917.74310649.562700.498503.155602.59240HepG2AKAP1
MRPL39ENSG00000154719.9351.33800537.46430-0.613304.141503.18970HepG2ASCC1
MRPL39ENSG00000154719.9320.02510479.82540-0.584302.513401.65640HepG2BCLAF1
MRPL39ENSG00000154719.9268.15230655.07760-1.2886014.5892013.15890HepG2CPSF6
MRPL39ENSG00000154719.9272.72910479.19690-0.813107.309406.25910HepG2DDX21
MRPL39ENSG00000154719.9382.76260542.85390-0.504102.303801.59230HepG2DDX55
MRPL39ENSG00000154719.9393.26110534.49200-0.442702.136801.58700HepG2DDX6
MRPL39ENSG00000154719.9367.80880513.84840-0.482402.686102.10200HepG2EIF2S1
MRPL39ENSG00000154719.9392.81100567.87660-0.531703.225102.53600HepG2EIF4A3
MRPL39ENSG00000154719.9523.51530737.21910-0.493903.161302.29320HepG2EIF4G2
MRPL39ENSG00000154719.9618.25180830.79050-0.426304.518803.78520HepG2ETF1
MRPL39ENSG00000154719.9638.30330455.869600.485503.896602.90500HepG2EWSR1
MRPL39ENSG00000154719.9382.20200656.16710-0.779702.889601.85010HepG2FTO
MRPL39ENSG00000154719.9396.61550531.49120-0.422302.196601.60080HepG2G3BP1
MRPL39ENSG00000154719.9335.07620501.22130-0.581003.081002.00340HepG2GNB2L1
MRPL39ENSG00000154719.9435.19470742.62540-0.771006.534605.57830HepG2GPKOW
MRPL39ENSG00000154719.9278.53920434.95170-0.643004.390003.60170HepG2HNRNPA1
MRPL39ENSG00000154719.9245.40260483.78710-0.979209.137307.93470HepG2HNRNPC
MRPL39ENSG00000154719.9418.65420580.06200-0.470404.290803.41850HepG2HNRNPF
MRPL39ENSG00000154719.9576.51030710.74380-0.302002.343101.71600HepG2HNRNPL
MRPL39ENSG00000154719.9384.95290708.69710-0.880508.781007.72820HepG2HNRNPLL
MRPL39ENSG00000154719.9437.13390571.19540-0.385902.548401.85320HepG2IGF2BP1
MRPL39ENSG00000154719.9499.93300761.31240-0.606803.991602.99040HepG2LARP4
MRPL39ENSG00000154719.9919.99520576.336500.674603.918903.17970HepG2MATR3
MRPL39ENSG00000154719.9311.20490455.85730-0.550703.876602.92250HepG2MSI2
MRPL39ENSG00000154719.9428.90000722.68300-0.752704.632703.35930HepG2MTPAP
MRPL39ENSG00000154719.9396.00360589.91800-0.575003.670102.94470HepG2NCBP2
MRPL39ENSG00000154719.9592.88730773.62670-0.383903.567602.70180HepG2NOL12
MRPL39ENSG00000154719.9490.39670628.36360-0.357701.966401.33090HepG2NSUN2
MRPL39ENSG00000154719.9379.89610604.82090-0.670907.445106.63350HepG2PTBP1
MRPL39ENSG00000154719.9467.08380738.44890-0.660807.032506.13970HepG2PUF60
MRPL39ENSG00000154719.9583.98820783.84280-0.424605.166904.40870HepG2PUM1
MRPL39ENSG00000154719.9614.34970783.30340-0.350502.914702.22710HepG2PUM2
MRPL39ENSG00000154719.9362.10850475.15870-0.392002.939302.30910HepG2PUS1
MRPL39ENSG00000154719.9457.09850655.04940-0.519104.655903.87700HepG2QKI
MRPL39ENSG00000154719.9537.74650673.11290-0.323902.355301.84870HepG2NELFE
MRPL39ENSG00000154719.9461.72620626.90370-0.441203.885103.17130HepG2RECQL
MRPL39ENSG00000154719.9572.26800707.94790-0.307002.924502.20440HepG2SLBP
MRPL39ENSG00000154719.9944.33520657.274100.522706.664106.00740HepG2SRSF1
MRPL39ENSG00000154719.9462.94490569.89200-0.299802.072801.46080HepG2SRSF7
MRPL39ENSG00000154719.9386.22780534.72360-0.469304.260603.60340HepG2SRSF9
MRPL39ENSG00000154719.9348.93860540.44290-0.631203.342602.60720HepG2SUPV3L1
MRPL39ENSG00000154719.9401.13260690.64390-0.783907.639306.51050HepG2TARDBP
MRPL39ENSG00000154719.9315.40960471.15330-0.579005.463304.72220HepG2TRIM56
MRPL39ENSG00000154719.9554.82250721.34620-0.378702.895901.99950HepG2TUFM
MRPL39ENSG00000154719.9642.62300481.874000.415202.087801.53430HepG2U2AF1
MRPL39ENSG00000154719.91097.37490834.650400.394703.145001.87820K562AARS
MRPL39ENSG00000154719.91310.63180968.542200.436306.099905.30900K562AGGF1
MRPL39ENSG00000154719.9967.291201824.37560-0.9154015.4693014.23510K562AQR
MRPL39ENSG00000154719.9745.48650997.22960-0.419704.934203.63420K562BCLAF1
MRPL39ENSG00000154719.9790.321901176.16540-0.573602.607201.76240K562BOP1
MRPL39ENSG00000154719.9337.19780494.63970-0.552803.723002.46250K562CCAR1
MRPL39ENSG00000154719.91130.008402035.14490-0.848803.713002.44900K562CNOT7
MRPL39ENSG00000154719.91159.797401433.07680-0.305202.899401.76250K562CPEB4
MRPL39ENSG00000154719.9609.199301250.68920-1.037706.322705.13830K562CPSF6
MRPL39ENSG00000154719.91553.815601084.498400.518708.334306.66430K562DKC1
MRPL39ENSG00000154719.9541.50820789.10100-0.543204.181503.03980K562EFTUD2
MRPL39ENSG00000154719.9675.83790840.26470-0.314202.836801.61070K562EIF2S1
MRPL39ENSG00000154719.9850.386801202.48070-0.499804.960204.03710K562EIF2S2
MRPL39ENSG00000154719.9520.16220845.03760-0.700105.474003.95300K562EIF3D
MRPL39ENSG00000154719.91578.764102024.45820-0.358704.656903.45070K562EIF4G2
MRPL39ENSG00000154719.9675.64260860.01930-0.348102.718701.46470K562EXOSC5
MRPL39ENSG00000154719.9751.258501272.37630-0.760103.674602.68470K562FMR1
MRPL39ENSG00000154719.9613.217401078.37980-0.814404.631403.41860K562FTO
MRPL39ENSG00000154719.91056.82290831.150500.346503.466002.79990K562FXR1
MRPL39ENSG00000154719.91111.98830839.843000.404902.257001.62690K562G3BP2
MRPL39ENSG00000154719.9746.270201194.17070-0.678203.488902.60080K562GPKOW
MRPL39ENSG00000154719.9859.548601179.04170-0.456004.845103.44150K562HNRNPA1
MRPL39ENSG00000154719.9500.43410913.24620-0.8678011.7841010.62560K562HNRNPC
MRPL39ENSG00000154719.9599.19530815.54280-0.444703.428902.14890K562HNRNPF
MRPL39ENSG00000154719.91018.718401305.70520-0.358103.729702.69120K562HNRNPU
MRPL39ENSG00000154719.9709.469301019.48850-0.523002.345501.49510K562KRR1
MRPL39ENSG00000154719.9719.869101165.61410-0.695303.559402.55920K562METAP2
MRPL39ENSG00000154719.9831.340801076.67600-0.373104.352503.35820K562MTPAP
MRPL39ENSG00000154719.91116.80730839.825200.411102.228701.45760K562NAA15
MRPL39ENSG00000154719.9785.523101196.24000-0.6068012.6845011.24690K562NSUN2
MRPL39ENSG00000154719.91035.03850767.882400.430603.396202.56310K562PRPF8
MRPL39ENSG00000154719.9601.81890818.82440-0.444203.139802.16840K562PSIP1
MRPL39ENSG00000154719.91771.249102301.97900-0.378105.402304.04040K562PUM2
MRPL39ENSG00000154719.91258.81890973.836200.370203.859103.17520K562RBM15
MRPL39ENSG00000154719.9595.26470747.08830-0.327702.232401.34540K562RCC2
MRPL39ENSG00000154719.9758.623801180.44860-0.6379010.626709.10170K562SF3A3
MRPL39ENSG00000154719.9376.76790544.83220-0.532103.792202.29460K562SLBP
MRPL39ENSG00000154719.9448.43350597.27810-0.413502.665301.63790K562SRSF4
MRPL39ENSG00000154719.9825.768701047.28880-0.342802.454401.47220K562SRSF5
MRPL39ENSG00000154719.9852.266901122.58180-0.397402.064901.44760K562TARDBP
MRPL39ENSG00000154719.9791.482401082.82330-0.452204.118403.09070K562TIA1
MRPL39ENSG00000154719.9541.18630787.57010-0.541304.036102.89120K562TIAL1
MRPL39ENSG00000154719.9589.15700836.71040-0.506104.300203.06200K562TRIM56
MRPL39ENSG00000154719.91904.491502490.45470-0.387004.176002.45060K562UBE2L3
MRPL39ENSG00000154719.9570.10350786.98610-0.465102.367401.43270K562UCHL5
MRPL39ENSG00000154719.9644.452201268.40210-0.9769026.2033024.27990K562UPF1
MRPL39ENSG00000154719.9945.398501251.50350-0.404703.917601.90950K562UPF2
MRPL39ENSG00000154719.9817.806101085.32600-0.408303.709302.69550K562WDR3
MRPL39ENSG00000154719.91520.611902055.25350-0.434704.679203.51290K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MRPL39 is not available on ENCORE database.





5 RBPs can affect the splicing of MRPL39 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMRPL39ENSG00000154719.9chr21-2697910626979277269787602697896726979714269797960.078000.000000.00000includedK562AQR
SEMRPL39ENSG00000154719.9chr21-269721102697224726969613269697262697367926973779-0.059000.000090.00161excludedK562AQR
SEMRPL39ENSG00000154719.9chr21-269761072697624726973679269737792697876026978967-0.090000.000000.00000excludedK562AQR
SEMRPL39ENSG00000154719.9chr21-269761072697613326973679269737792697876026978967-0.332000.000590.04808excludedK562SUPV3L1
A3SSMRPL39ENSG00000154719.9chr21-2695796726958177269579672695806626961146269612940.123000.000000.00000longerK562AQR
A3SSMRPL39ENSG00000154719.9chr21-2696114626961304269611462696119426965123269652720.121000.000000.00000longerK562AQR
A3SSMRPL39ENSG00000154719.9chr21-2697881426979016269788142697896726979714269797960.106000.000000.00000longerK562AQR
MXEMRPL39ENSG00000154719.9chr21-26976107269762472697876026978967269736792697377926979714269797960.174000.000000.000001includedK562DROSHA
MXEMRPL39ENSG00000154719.9chr21-2697367926973779269761072697624726969613269697262697876026978967-0.127000.000000.000002includedK562AQR
MXEMRPL39ENSG00000154719.9chr21-26976107269762472697876026978967269736792697377926979714269798290.157000.000000.000001includedK562HNRNPUL1
MXEMRPL39ENSG00000154719.9chr21-26976107269762472697876026978967269736792697377926979714269798290.175000.000040.012331includedK562GEMIN5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MRPL39 is not avaliable on ENCORE database.