LIMA1

General Information

Gene Name       : LIMA1
Gene ID             : ENSG00000050405.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LIMA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LIMA1ENSG00000050405.1384.7074.2179.45ENCSR000AEF
HepG2LIMA1ENSG00000050405.139.8819.0414.46ENCSR985KAT
K562LIMA1ENSG00000050405.1324.5524.8724.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LIMA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LIMA1 RNA is bound by 4 proteins.  







eCLIP assay for LIMA1 is not avaliable on ENCORE database.





4 proteins are bound to LIMA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125057164850571708-3'-UTR,CDS,intron-Distal4.359824.34038HepG2BCLAF1
chr125057103150571085-3'-UTR,CDS,intron-Distal4.381554.78571K562UCHL5
chr125057092750571049-3'-UTR,CDS,intron-Distal4.922596.04243HepG2BCLAF1
chr125057577050575829-3'-UTR,CDS,intron-Distal,intron-Proximal3.866163.00996K562BUD13
chr125064242450642543-3'-UTR,5'-UTR,CDS,intron-Distal3.946213.31827HepG2GRWD1
chr125061598950616071-5'-UTR,CDS,intron-Distal,intron-Proximal3.337623.27569HepG2BCLAF1
chr125061615250616224-5'-UTR,CDS,intron-Distal,intron-Proximal4.081813.36385K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LIMA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LIMA1 is not available on ENCORE database.

  • 106 RBPs can affect the levels of LIMA1.  








The Knockdown/knockout RNA-Seq assay for LIMA1 is not available on ENCORE database.





106 RBPs can affect the gene expression of LIMA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LIMA1ENSG00000050405.91088.66430834.171100.384002.511601.51760HepG2AKAP8
LIMA1ENSG00000050405.91355.55890773.328300.809605.257604.23150HepG2AKAP8L
LIMA1ENSG00000050405.91248.39890804.910000.633106.188505.03540HepG2ASCC1
LIMA1ENSG00000050405.91040.739101293.40290-0.313603.728102.95250HepG2AUH
LIMA1ENSG00000050405.9581.50750924.96620-0.669607.035606.13170HepG2BOP1
LIMA1ENSG00000050405.9486.09380698.41540-0.522902.446201.73080HepG2CNOT7
LIMA1ENSG00000050405.9631.13190875.15730-0.471605.149803.75930HepG2YBX3
LIMA1ENSG00000050405.9795.34330466.066800.770908.819107.07930HepG2CSTF2
LIMA1ENSG00000050405.91357.407601064.513700.350604.118603.36440HepG2CELF1
LIMA1ENSG00000050405.9757.717401144.61160-0.5951011.3408010.00220HepG2DAZAP1
LIMA1ENSG00000050405.91040.68890797.010900.384802.960702.26130HepG2DDX21
LIMA1ENSG00000050405.91224.51940931.866300.393902.644702.03170HepG2DDX3X
LIMA1ENSG00000050405.91680.80420964.298700.801505.276703.93870HepG2DDX59
LIMA1ENSG00000050405.9564.60170866.79320-0.618505.806704.39820HepG2DDX5
LIMA1ENSG00000050405.9548.28810859.35920-0.648308.878607.67150HepG2DNAJC21
LIMA1ENSG00000050405.9568.71550851.74130-0.582709.466408.34590HepG2DNAJC2
LIMA1ENSG00000050405.91473.35260846.376300.7996010.268108.63420HepG2EEF2
LIMA1ENSG00000050405.91328.320101129.231300.234202.136401.38520HepG2EIF4G1
LIMA1ENSG00000050405.9867.180301081.73100-0.318902.135701.41430HepG2EIF4G2
LIMA1ENSG00000050405.91715.002201484.992900.207701.909801.39050HepG2ETF1
LIMA1ENSG00000050405.9860.03330614.014400.486004.968803.36600HepG2FAM120A
LIMA1ENSG00000050405.9402.55690759.44010-0.9157012.081009.97850HepG2FASTKD2
LIMA1ENSG00000050405.91508.629501016.020600.570205.211004.18260HepG2FIP1L1
LIMA1ENSG00000050405.91435.89440933.513500.621103.443001.87820HepG2HLTF
LIMA1ENSG00000050405.9688.73300867.59180-0.333102.335901.73780HepG2HNRNPA1
LIMA1ENSG00000050405.9636.273801042.65300-0.7125014.4712013.04000HepG2HNRNPL
LIMA1ENSG00000050405.9605.14600918.64600-0.602205.193104.35930HepG2HNRNPLL
LIMA1ENSG00000050405.91050.04690701.232900.582406.662105.27590HepG2HNRNPM
LIMA1ENSG00000050405.91292.98280759.292800.767902.734901.75760HepG2IGF2BP3
LIMA1ENSG00000050405.91161.76730883.483500.394902.631302.01260HepG2NCBP2
LIMA1ENSG00000050405.9682.086001134.99460-0.7347011.8938010.35920HepG2NOL12
LIMA1ENSG00000050405.9508.37030814.54410-0.680106.019804.94160HepG2NSUN2
LIMA1ENSG00000050405.9346.90020638.27110-0.879605.349304.08520HepG2PABPC1
LIMA1ENSG00000050405.91190.66260948.907900.327303.564402.61420HepG2PARN
LIMA1ENSG00000050405.9962.17970756.467900.346903.609902.93610HepG2PCBP1
LIMA1ENSG00000050405.91309.90930572.328001.1945019.5314017.66950HepG2PRPF8
LIMA1ENSG00000050405.91536.15370769.742900.9968028.1363026.74600HepG2PTBP1
LIMA1ENSG00000050405.91216.37860783.871600.633809.134608.12290HepG2PUS1
LIMA1ENSG00000050405.91425.06090833.632500.7734014.0623012.81120HepG2QKI
LIMA1ENSG00000050405.91361.72180889.859000.613703.352202.57860HepG2RAVER1
LIMA1ENSG00000050405.91416.153401003.312900.497105.972904.77230HepG2RBM15
LIMA1ENSG00000050405.9994.743401241.18070-0.319303.184302.63880HepG2RBM22
LIMA1ENSG00000050405.91289.74970756.581900.769407.218706.17170HepG2RBM25
LIMA1ENSG00000050405.91087.21250856.642900.343803.484502.89250HepG2NELFE
LIMA1ENSG00000050405.91315.08350797.859200.7208014.4959013.25550HepG2RECQL
LIMA1ENSG00000050405.91551.15890864.511000.8433012.1530010.57220HepG2RPS2
LIMA1ENSG00000050405.91058.72110701.067400.594604.042503.07440HepG2RPS3A
LIMA1ENSG00000050405.91302.06110882.450500.561105.685004.13130HepG2RPS5
LIMA1ENSG00000050405.91529.83640566.169301.4340025.2875023.39160HepG2RRP9
LIMA1ENSG00000050405.9927.33720671.068400.466503.784502.68330HepG2SERBP1
LIMA1ENSG00000050405.9649.86680909.28700-0.484604.012903.17770HepG2SF3B1
LIMA1ENSG00000050405.9828.041801038.86290-0.327203.737702.94230HepG2SLBP
LIMA1ENSG00000050405.9516.14850868.18470-0.750203.009701.34250HepG2SLTM
LIMA1ENSG00000050405.91417.254201011.738000.486202.679801.91040HepG2SNRNP70
LIMA1ENSG00000050405.92213.207001401.870400.6587018.6374017.64050HepG2SRFBP1
LIMA1ENSG00000050405.91728.50070836.480201.0470033.5195032.27250HepG2SRSF1
LIMA1ENSG00000050405.9520.93700978.37060-0.909308.368306.54910HepG2SRSF3
LIMA1ENSG00000050405.9895.995101069.75190-0.255702.287301.71120HepG2SRSF5
LIMA1ENSG00000050405.9873.98590680.526600.360903.823303.19610HepG2SRSF9
LIMA1ENSG00000050405.91052.220301217.15970-0.210101.884901.44050HepG2SSB
LIMA1ENSG00000050405.9414.95520678.95760-0.710404.644503.08580HepG2STAU1
LIMA1ENSG00000050405.9858.83810609.766800.494003.035701.87950HepG2STIP1
LIMA1ENSG00000050405.9983.06680751.878300.386703.931603.28170HepG2TAF15
LIMA1ENSG00000050405.91536.12740888.855000.789204.041402.76930HepG2TBRG4
LIMA1ENSG00000050405.9624.16620939.82850-0.590509.096508.16520HepG2TRIM56
LIMA1ENSG00000050405.91312.30000869.340700.594005.717504.83150HepG2U2AF1
LIMA1ENSG00000050405.9889.65130692.265400.361803.502502.33950HepG2UTP18
LIMA1ENSG00000050405.9485.16270650.24310-0.422503.575802.91000HepG2UTP3
LIMA1ENSG00000050405.91253.01970835.024900.5854011.5145010.30340HepG2ZC3H8
LIMA1ENSG00000050405.9552.67240740.72740-0.422504.868404.19460HepG2ZNF622
LIMA1ENSG00000050405.91297.07120711.939100.865307.936605.89730K562AARS
LIMA1ENSG00000050405.9941.307301342.81940-0.512504.926103.27250K562ABCF1
LIMA1ENSG00000050405.9300.06740536.02870-0.837003.548601.60300K562ADAR
LIMA1ENSG00000050405.9708.123601579.19960-1.1571021.0126019.56880K562AQR
LIMA1ENSG00000050405.91544.860401227.114600.332102.613501.37220K562CIRBP
LIMA1ENSG00000050405.9649.890901364.88120-1.070508.968407.03480K562CNOT7
LIMA1ENSG00000050405.91647.859602153.67850-0.386202.680601.72090K562CELF1
LIMA1ENSG00000050405.9664.56770932.42280-0.488604.187902.67820K562DDX21
LIMA1ENSG00000050405.91006.68970788.690200.352002.900401.83360K562DDX3X
LIMA1ENSG00000050405.9399.20420587.51660-0.557503.927002.29680K562DHX30
LIMA1ENSG00000050405.91734.008701472.935300.235302.365001.56400K562DKC1
LIMA1ENSG00000050405.9858.61070619.451100.470902.775401.49470K562EEF2
LIMA1ENSG00000050405.9888.73220640.855200.471703.121502.01940K562EIF3D
LIMA1ENSG00000050405.9640.28430823.97820-0.363902.602701.80700K562EIF4A3
LIMA1ENSG00000050405.91302.079101751.35500-0.427706.457805.04660K562EIF4G2
LIMA1ENSG00000050405.9659.27100887.29190-0.428503.757602.24830K562EXOSC5
LIMA1ENSG00000050405.9852.95080532.775100.678805.669703.27920K562FAM120A
LIMA1ENSG00000050405.91109.85920856.742000.373302.756801.90470K562FMR1
LIMA1ENSG00000050405.91144.68980736.820800.635508.619406.14190K562FUS
LIMA1ENSG00000050405.9720.366001049.65340-0.543107.034705.27050K562GLRX3
LIMA1ENSG00000050405.9678.417801343.05880-0.9853017.5179015.56500K562GRSF1
LIMA1ENSG00000050405.9396.60730677.12990-0.771707.975504.82040K562GRWD1
LIMA1ENSG00000050405.9594.42770854.61300-0.523805.303703.83150K562HNRNPA1
LIMA1ENSG00000050405.9587.10030779.31070-0.408602.890102.28270K562HNRNPC
LIMA1ENSG00000050405.9959.002201297.07630-0.435704.356702.99670K562HNRNPL
LIMA1ENSG00000050405.9689.90700946.40160-0.456104.935003.72750K562HNRNPU
LIMA1ENSG00000050405.9507.85250686.46020-0.434802.199501.37790K562KRR1
LIMA1ENSG00000050405.9868.722701203.29940-0.470004.961903.82820K562MAGOH
LIMA1ENSG00000050405.92333.123001627.350900.519607.692406.02700K562MBNL1
LIMA1ENSG00000050405.9518.634101103.57700-1.0894027.9109025.76550K562MTPAP
LIMA1ENSG00000050405.91261.23580822.803200.616108.506906.38420K562NCBP2
LIMA1ENSG00000050405.9949.893501226.15460-0.368305.540604.53960K562NSUN2
LIMA1ENSG00000050405.9931.599401311.24700-0.493202.453601.31000K562PABPC1
LIMA1ENSG00000050405.9539.770301128.63580-1.0642013.5402011.72420K562PCBP3
LIMA1ENSG00000050405.9450.49390865.74330-0.9424013.7621012.04120K562POLR2G
LIMA1ENSG00000050405.91985.612501169.086900.7641014.4519012.99890K562PTBP1
LIMA1ENSG00000050405.91592.717601910.82680-0.262702.370101.61600K562PUF60
LIMA1ENSG00000050405.92365.836701991.402700.248502.471501.56310K562PUM2
LIMA1ENSG00000050405.91622.129501357.474400.256901.754301.30160K562PUS1
LIMA1ENSG00000050405.91017.338001322.68660-0.378703.933203.24300K562RBM15
LIMA1ENSG00000050405.9820.262801273.63190-0.634808.166405.49650K562RBM17
LIMA1ENSG00000050405.9797.540201120.96990-0.491104.651303.52830K562RBM22
LIMA1ENSG00000050405.9704.62640909.15540-0.367702.939601.56060K562RBM25
LIMA1ENSG00000050405.9810.31340637.288800.346402.492401.55580K562RCC2
LIMA1ENSG00000050405.9824.99910593.285100.475602.342401.59350K562RPS19
LIMA1ENSG00000050405.9477.79170771.26880-0.690907.217005.48490K562SAFB
LIMA1ENSG00000050405.9398.29980578.16560-0.537603.276701.88830K562SLBP
LIMA1ENSG00000050405.91472.928201239.601200.248702.669601.74710K562SRPK2
LIMA1ENSG00000050405.9776.689401158.36370-0.576705.170803.38310K562STAU1
LIMA1ENSG00000050405.9644.66030868.30620-0.429703.799902.83590K562SYNCRIP
LIMA1ENSG00000050405.91297.50150999.057600.377003.077301.39200K562TBRG4
LIMA1ENSG00000050405.9443.04760672.05080-0.601104.391803.19340K562TIAL1
LIMA1ENSG00000050405.9523.27690713.76520-0.447903.189602.15830K562TRIM56
LIMA1ENSG00000050405.91298.400801060.178300.292302.952601.63990K562TROVE2
LIMA1ENSG00000050405.91354.64000929.122100.543904.126702.73270K562U2AF1
LIMA1ENSG00000050405.91612.231701300.119200.310303.981203.13320K562UPF1
LIMA1ENSG00000050405.9913.760901112.46850-0.283902.108701.34590K562WDR3
LIMA1ENSG00000050405.9946.543701156.85470-0.289503.245302.33550K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LIMA1 is not available on ENCORE database.





1 RBPs can affect the splicing of LIMA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLIMA1ENSG00000050405.9chr12-5058623450586347505862345058634450589612505896700.129000.000500.07006longerK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LIMA1 is not avaliable on ENCORE database.