FAM20A

General Information

Gene Name       : FAM20A
Gene ID             : ENSG00000108950.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM20A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM20AENSG00000108950.110.000.000.00ENCSR000AEF
HepG2FAM20AENSG00000108950.117.205.966.58ENCSR985KAT
K562FAM20AENSG00000108950.110.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM20A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM20A RNA is bound by 8 proteins.  







eCLIP assay for FAM20A is not avaliable on ENCORE database.





8 proteins are bound to FAM20A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr176659745066597504-5'-UTR,intron-Distal4.456434.87288HepG2NCBP2
chr176659741166597484-5'-UTR,intron-Distal3.9883210.03874HepG2DDX3X
chr176659715066597215-5'-UTR,intron-Distal4.093917.63030HepG2DDX3X
chr176659708966597141-5'-UTR,intron-Distal4.317785.48791HepG2DDX3X
chr176659729366597341-5'-UTR,intron-Distal4.312796.13654HepG2DDX3X
chr176659639066596447-CDS,intron-Distal3.050703.80065HepG2PPIG
chr176653752466537610-intron-Distal4.411965.18972HepG2GRWD1
chr176653611166536201-intron-Distal,intron-Proximal6.0035916.73670HepG2SF3B4
chr176659603966596137-intron-Distal3.525264.39142HepG2PCBP2
chr176654809366548150-intron-Distal,intron-Proximal4.639639.63982HepG2SF3B4
chr176658187066581979-intron-Distal3.893323.31570HepG2HNRNPK
chr176653808766538126-intron-Distal,intron-Proximal4.256273.59236HepG2AQR
chr176659602566596129-intron-Distal3.7154419.05854HepG2HNRNPK
chr176653745166537504-intron-Distal3.728283.14999HepG2GRWD1
chr176658567566585745-intron-Distal3.745025.34579HepG2HNRNPK
chr176659000266590148-intron-Distal3.045746.36410HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM20A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM20A is not available on ENCORE database.

  • 94 RBPs can affect the levels of FAM20A.  








The Knockdown/knockout RNA-Seq assay for FAM20A is not available on ENCORE database.





94 RBPs can affect the gene expression of FAM20A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM20AENSG00000108950.7241.72700583.43550-1.2712013.6284012.49480HepG2ACO1
FAM20AENSG00000108950.7142.03390814.07440-2.5189045.3877043.62610HepG2AKAP1
FAM20AENSG00000108950.7396.09870624.90450-0.657803.414702.66690HepG2AUH
FAM20AENSG00000108950.7277.93550176.885800.651802.541201.67830HepG2BCLAF1
FAM20AENSG00000108950.7692.02310509.592300.441402.981801.70580HepG2BUD13
FAM20AENSG00000108950.7191.65350368.40080-0.942807.761406.56120HepG2CALR
FAM20AENSG00000108950.7325.41620639.94550-0.9757010.074208.67880HepG2CIRBP
FAM20AENSG00000108950.7374.65840583.44060-0.639004.529003.71800HepG2CKAP4
FAM20AENSG00000108950.7152.58030469.84990-1.6226014.3244012.64160HepG2CNOT7
FAM20AENSG00000108950.7676.69730198.924801.7662024.7452022.94760HepG2CPSF6
FAM20AENSG00000108950.7358.65570261.225300.457202.787801.76630HepG2YBX3
FAM20AENSG00000108950.7793.68500546.200700.539007.738206.58830HepG2DAZAP1
FAM20AENSG00000108950.7905.15240539.654800.746007.006505.77800HepG2DDX19B
FAM20AENSG00000108950.7203.38000463.77320-1.1892013.1951011.85240HepG2DDX21
FAM20AENSG00000108950.7352.53390187.282800.912404.017202.49860HepG2DDX27
FAM20AENSG00000108950.7383.62140779.82100-1.0235011.3892010.20050HepG2DDX3X
FAM20AENSG00000108950.7226.95330376.50280-0.730305.731703.86640HepG2DDX52
FAM20AENSG00000108950.7443.81570225.901000.974202.825001.83640HepG2DDX59
FAM20AENSG00000108950.7819.59750536.227500.612005.596704.20600HepG2DDX5
FAM20AENSG00000108950.7378.49120669.88410-0.823706.711605.78360HepG2DDX6
FAM20AENSG00000108950.7772.66230558.223700.468904.740503.89700HepG2DKC1
FAM20AENSG00000108950.7246.45480364.57160-0.564902.909501.98580HepG2EIF3D
FAM20AENSG00000108950.7434.59660692.90860-0.673004.079403.25200HepG2EIF4B
FAM20AENSG00000108950.7703.67850538.904500.384802.288401.51450HepG2EIF4G1
FAM20AENSG00000108950.7696.59970516.228200.432203.070802.21460HepG2EIF4G2
FAM20AENSG00000108950.7303.94820570.23780-0.907705.890704.67310HepG2EWSR1
FAM20AENSG00000108950.7209.36500687.03770-1.7144015.6586014.07920HepG2FIP1L1
FAM20AENSG00000108950.7355.37910166.624001.092707.050705.15250HepG2FKBP4
FAM20AENSG00000108950.7370.65970599.95310-0.694806.445505.27400HepG2FUBP3
FAM20AENSG00000108950.7349.63050495.65100-0.503502.375301.33600HepG2FUS
FAM20AENSG00000108950.7148.95930324.59290-1.123709.132007.55080HepG2GEMIN5
FAM20AENSG00000108950.7728.96430225.436401.6930022.7188021.07340HepG2GPKOW
FAM20AENSG00000108950.7142.47180258.92730-0.861904.934004.10460HepG2HNRNPA1
FAM20AENSG00000108950.7524.59270288.025100.864907.831706.71340HepG2HNRNPC
FAM20AENSG00000108950.7587.20410406.966300.528902.899801.34320HepG2HNRNPD
FAM20AENSG00000108950.71108.18940309.176601.8416020.3065018.60940HepG2HNRNPF
FAM20AENSG00000108950.7139.80370674.47920-2.2704041.7499039.35070HepG2HNRNPK
FAM20AENSG00000108950.7786.93700497.531600.6614010.867109.60870HepG2HNRNPL
FAM20AENSG00000108950.7424.43410215.143600.980104.015603.27190HepG2HNRNPLL
FAM20AENSG00000108950.7208.75030473.86760-1.1827011.442309.74400HepG2HNRNPM
FAM20AENSG00000108950.7140.81890286.11970-1.022808.685007.65680HepG2HNRNPU
FAM20AENSG00000108950.71001.69000304.445801.7181043.0940040.80340HepG2IGF2BP1
FAM20AENSG00000108950.7209.05620321.35410-0.620303.187601.45140HepG2MARK2
FAM20AENSG00000108950.7410.82860722.31440-0.814106.815805.85840HepG2MATR3
FAM20AENSG00000108950.7221.69750555.79100-1.3260014.8733013.15750HepG2MSI2
FAM20AENSG00000108950.7556.30970219.550301.341208.832607.07750HepG2MTPAP
FAM20AENSG00000108950.7312.89470541.61430-0.791606.858705.66490HepG2NOL12
FAM20AENSG00000108950.7526.32470190.809701.4637011.7254010.28570HepG2NSUN2
FAM20AENSG00000108950.7105.14030429.37060-2.0299018.8392016.49030HepG2PABPC1
FAM20AENSG00000108950.7883.37220658.418900.423902.800302.07430HepG2PABPC4
FAM20AENSG00000108950.7352.43510255.193000.465702.775902.03790HepG2PPIL4
FAM20AENSG00000108950.7529.53020421.204800.330102.221101.52050HepG2PRPF4
FAM20AENSG00000108950.7233.91050493.16310-1.076107.145705.27230HepG2PRPF6
FAM20AENSG00000108950.7516.85500733.70140-0.505404.040603.40720HepG2PTBP1
FAM20AENSG00000108950.7859.56790517.032400.733308.846407.86130HepG2PUF60
FAM20AENSG00000108950.7431.05800548.45800-0.347502.028901.44840HepG2PUM2
FAM20AENSG00000108950.7290.10290452.61890-0.641702.661401.96960HepG2RAVER1
FAM20AENSG00000108950.7597.10880840.47120-0.493205.014203.90200HepG2RBM15
FAM20AENSG00000108950.7100.95810599.70670-2.5705058.0043056.24070HepG2RBM22
FAM20AENSG00000108950.7308.22370721.17820-1.2264019.3793017.69850HepG2RBM25
FAM20AENSG00000108950.7828.91620457.452800.857509.834707.94600HepG2RBM27
FAM20AENSG00000108950.7367.08000816.54840-1.1534022.3909021.14030HepG2NELFE
FAM20AENSG00000108950.7948.03300760.487200.317902.879502.25220HepG2RECQL
FAM20AENSG00000108950.7952.88180333.131801.5161028.2565026.57600HepG2RPLP0
FAM20AENSG00000108950.7756.33300444.852200.765605.136803.87290HepG2RPS10
FAM20AENSG00000108950.71224.52090471.579001.3765018.0147016.07480HepG2RPS3A
FAM20AENSG00000108950.7418.34840254.792500.715307.172406.20460HepG2SAFB2
FAM20AENSG00000108950.7522.34230760.07840-0.541203.414802.66300HepG2SF3A3
FAM20AENSG00000108950.7700.27040495.787400.498106.068205.09240HepG2SLBP
FAM20AENSG00000108950.7480.74560677.32830-0.494605.401704.76560HepG2SRFBP1
FAM20AENSG00000108950.7353.91950190.657300.892304.761302.73030HepG2SRP68
FAM20AENSG00000108950.7212.64040797.33570-1.9068050.8616049.39560HepG2SRSF1
FAM20AENSG00000108950.7737.60330510.514000.530806.443305.54270HepG2SRSF5
FAM20AENSG00000108950.71003.06840303.772601.7233017.4719015.98910HepG2SRSF7
FAM20AENSG00000108950.7462.67090648.66810-0.487505.158204.44670HepG2SRSF9
FAM20AENSG00000108950.7963.30810588.049300.7120012.4197011.48600HepG2SSB
FAM20AENSG00000108950.7287.12110410.14600-0.514502.616601.55070HepG2STIP1
FAM20AENSG00000108950.7598.28990716.65400-0.260401.873601.39570HepG2TAF15
FAM20AENSG00000108950.7795.77910209.858301.9229029.8891027.98980HepG2TARDBP
FAM20AENSG00000108950.71472.46600951.231300.630302.611901.57150HepG2TBRG4
FAM20AENSG00000108950.7315.92150133.550801.242109.056907.46600HepG2TFIP11
FAM20AENSG00000108950.7414.52970277.957200.576504.333703.73670HepG2TIAL1
FAM20AENSG00000108950.7834.28690505.145700.723708.823707.10340HepG2TUFM
FAM20AENSG00000108950.7203.85980587.57230-1.5272012.6867011.30760HepG2U2AF1
FAM20AENSG00000108950.7220.71590443.69020-1.007402.725201.74410HepG2U2AF2
FAM20AENSG00000108950.7363.09250534.70660-0.558402.989602.12140HepG2UBE2L3
FAM20AENSG00000108950.7325.53090117.699001.4676013.2923011.65300HepG2UCHL5
FAM20AENSG00000108950.7497.60280182.397101.4478011.183309.09130HepG2UPF2
FAM20AENSG00000108950.71096.50640692.844600.6622011.049509.13400HepG2UTP18
FAM20AENSG00000108950.7241.70860650.79060-1.4289027.7864026.19000HepG2UTP3
FAM20AENSG00000108950.7677.03160422.382100.680603.980102.66030HepG2XPO5
FAM20AENSG00000108950.7208.13530497.89040-1.2583011.023509.06020HepG2XRCC6
FAM20AENSG00000108950.7713.12480415.679600.7786012.4485011.19560HepG2ZC3H8
FAM20AENSG00000108950.71185.01850741.351200.676608.126007.31700HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM20A is not available on ENCORE database.





9 RBPs can affect the splicing of FAM20A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM20AENSG00000108950.7chr17-665366876653686466536025665361076653698966538132-0.217000.000000.00000excludedHepG2TBRG4
SEFAM20AENSG00000108950.7chr17-6653677066536864665360256653610766536989665381320.242000.000430.04058includedHepG2QKI
SEFAM20AENSG00000108950.7chr17-665366876653686466536025665361076653698966538132-0.253000.000010.00247excludedHepG2DDX3X
SEFAM20AENSG00000108950.7chr17-665366876653686466536025665361076653698966538132-0.248000.000000.00029excludedHepG2NCBP2
SEFAM20AENSG00000108950.7chr17-665366876653686466536025665361076653698966538132-0.287000.001310.05504excludedHepG2SFPQ
SEFAM20AENSG00000108950.7chr17-6658626466586490665516996655188466596403665967370.212000.001190.02939includedHepG2SRSF1
SEFAM20AENSG00000108950.7chr17-665366876653686466536025665361076653698966538132-0.256000.000000.00000excludedHepG2HNRNPC
SEFAM20AENSG00000108950.7chr17-665366876653686466536025665361076653698966538132-0.236000.000000.00408excludedHepG2DROSHA
A3SSFAM20AENSG00000108950.7chr17-6653698966537124665369896653709966538125665383060.144000.001100.07621longerHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM20A is not avaliable on ENCORE database.