COPG1

General Information

Gene Name       : COPG1
Gene ID             : ENSG00000181789.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: COPG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COPG1ENSG00000181789.1439.1353.1846.16ENCSR000AEF
HepG2COPG1ENSG00000181789.14110.5294.38102.45ENCSR985KAT
K562COPG1ENSG00000181789.1441.0042.0041.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COPG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COPG1 RNA is bound by 30 proteins.  







eCLIP assay for COPG1 is not avaliable on ENCORE database.





30 proteins are bound to COPG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3128994046128994098+3'-UTR,CDS3.567319.25119K562LIN28B
chr3128973459128973529+3'-UTR,CDS,intron-Proximal3.621147.92595K562SF3B4
chr3128996464128996509+3'-UTR3.178596.85038HepG2G3BP1
chr3128973546128973582+3'-UTR,CDS3.211689.29110K562DDX24
chr3128993810128993864+3'-UTR,CDS,intron-Proximal4.520949.27995K562PRPF8
chr3128973514128973545+3'-UTR,CDS3.474297.29897K562DDX24
chr3128993797128993855+3'-UTR,CDS,intron-Proximal4.905829.68077HepG2PRPF8
chr3128996460128996469+3'-UTR4.3300615.41539HepG2DDX55
chr3128996538128996593+3'-UTR3.118823.40533K562PUM2
chr3128993781128993803+3'-UTR,CDS3.821405.03335K562UCHL5
chr3128996466128996478+3'-UTR3.544249.47477K562TIA1
chr3128993711128993820+3'-UTR,CDS,intron-Proximal4.246659.13294K562LIN28B
chr3128996308128996333+3'-UTR3.466835.10442K562YBX3
chr3128996460128996466+3'-UTR3.420983.09370K562NOLC1
chr3128996465128996527+3'-UTR3.787197.84240HepG2SUB1
chr3128971524128971536+3'-UTR,CDS3.286283.86052K562YBX3
chr3128996237128996300+3'-UTR,CDS3.4505110.05371K562YBX3
chr3128996459128996528+3'-UTR4.754174.66293HepG2TIA1
chr3128973822128973849+3'-UTR,CDS,intron-Proximal3.088125.96743K562BUD13
chr3128996458128996533+3'-UTR3.7299437.69919K562PABPC4
chr3128973548128973584+3'-UTR,CDS4.496679.37200HepG2G3BP1
chr3128971755128971794+3'-UTR,CDS3.503674.17219K562METAP2
chr3128996480128996535+3'-UTR4.9129614.26967K562ZC3H11A
chr3128996469128996519+3'-UTR3.5398016.61834HepG2DDX55
chr3128971692128971733+3'-UTR,CDS,intron-Proximal3.674647.50982HepG2AQR
chr3128996136128996224+3'-UTR,CDS,intron-Proximal3.256663.90015HepG2PABPN1
chr3128971691128971735+3'-UTR,CDS,intron-Proximal4.819798.01338K562AQR
chr3128971732128971776+3'-UTR,CDS3.025836.45750K562YBX3
chr3128971776128971789+3'-UTR,CDS3.951265.74135K562DDX24
chr3128996460128996544+3'-UTR3.4869319.47301HepG2LARP4
chr3128996548128996584+3'-UTR4.456935.18898HepG2LARP4
chr3128996511128996537+3'-UTR3.069503.20426K562DDX6
chr3128996459128996480+3'-UTR5.1382912.07773K562ZC3H11A
chr3128996466128996524+3'-UTR3.082964.60551K562NOLC1
chr3128971465128971506+3'-UTR,CDS,intron-Proximal3.612393.88579K562IGF2BP2
chr3128994033128994046+3'-UTR,CDS,intron-Proximal4.188414.55369K562LIN28B
chr3128968518128968552+5'-UTR3.165186.83987K562YBX3
chr3128971123128971172+5'-UTR,CDS,intron-Proximal3.424068.75659K562PUM2
chr3128968459128968574+5'-UTR,CDS4.1203712.20332K562DDX3X
chr3128971203128971214+5'-UTR,CDS,intron-Proximal4.179318.29266K562AQR
chr3128968488128968514+5'-UTR3.576887.86995K562YBX3
chr3128976423128976466+CDS5.091319.32383K562DDX24
chr3128991684128991743+CDS3.270007.16988HepG2PPIG
chr3128985912128985940+CDS,intron-Distal4.4850010.43819HepG2G3BP1
chr3128974941128974992+CDS3.979409.57619HepG2PPIG
chr3128974985128975041+CDS,intron-Proximal5.5262222.98761HepG2PRPF8
chr3128984500128984546+CDS3.482203.88509K562SND1
chr3128984414128984437+CDS5.013197.48032HepG2G3BP1
chr3128979159128979202+CDS,intron-Proximal3.540077.16774K562AQR
chr3128987346128987372+CDS,intron-Distal3.324265.60389HepG2PPIG
chr3128987263128987345+CDS,intron-Distal,intron-Proximal4.213233.98427HepG2SF3B4
chr3128976696128976733+CDS,intron-Proximal3.802236.74268HepG2PRPF8
chr3128984507128984575+CDS4.0379014.65273HepG2G3BP1
chr3128987402128987455+CDS,intron-Distal3.8471810.80755HepG2G3BP1
chr3128990744128990791+CDS,intron-Distal,intron-Proximal4.382179.12083K562PRPF8
chr3128979552128979595+CDS3.347187.72032HepG2G3BP1
chr3128979560128979604+CDS3.222856.56546K562RBM15
chr3128984595128984635+CDS,intron-Proximal3.477348.46997HepG2PPIG
chr3128984590128984635+CDS,intron-Proximal3.352814.24648K562METAP2
chr3128986779128986870+CDS,intron-Distal,intron-Proximal4.2307714.51981HepG2G3BP1
chr3128986796128986864+CDS,intron-Distal3.223457.84823HepG2PPIG
chr3128979538128979560+CDS3.332864.38249K562RBM15
chr3128987294128987345+CDS,intron-Distal,intron-Proximal4.069204.69223K562SF3B4
chr3128986826128986869+CDS,intron-Distal3.008146.80151HepG2BCLAF1
chr3128976568128976591+CDS,intron-Proximal3.758646.81103HepG2PPIG
chr3128984592128984635+CDS,intron-Proximal3.057857.37965K562YBX3
chr3128990742128990803+CDS,intron-Distal,intron-Proximal6.3952427.12240HepG2PRPF8
chr3128987337128987448+CDS,intron-Distal,intron-Proximal4.4224920.31063K562RPS3
chr3128979242128979247+CDS,intron-Proximal4.1457312.56301K562AQR
chr3128979643128979699+CDS,intron-Proximal4.2528014.65016HepG2PRPF8
chr3128968561128968581+CDS4.031835.96588K562ZNF622
chr3128976423128976468+CDS3.466293.85127HepG2GRWD1
chr3128976573128976663+CDS3.7116813.11799K562DDX24
chr3128969581128969617+CDS,intron-Proximal5.234827.63570K562AQR
chr3128979432128979485+CDS,intron-Proximal3.9804811.47124K562AQR
chr3128968588128968598+CDS,intron-Proximal4.285727.26476HepG2AQR
chr3128976415128976469+CDS3.321429.70870HepG2G3BP1
chr3128990657128990718+CDS,intron-Distal4.9421014.91265HepG2G3BP1
chr3128987341128987402+CDS,intron-Distal5.8847515.54887HepG2G3BP1
chr3128979461128979498+CDS,intron-Proximal4.911557.26081HepG2PRPF8
chr3128984528128984585+CDS3.390146.88376K562LIN28B
chr3128969556128969581+CDS,intron-Proximal4.351515.97140K562PUM2
chr3128974943128974985+CDS3.8342911.57027HepG2PRPF8
chr3128979242128979331+CDS,intron-Proximal5.5216718.60178HepG2PRPF8
chr3128987799128987816+CDS,intron-Distal3.906386.74775HepG2G3BP1
chr3128987841128987892+CDS,intron-Distal,intron-Proximal3.772489.39957HepG2PRPF8
chr3128985936128985985+CDS,intron-Distal,intron-Proximal4.3828813.14214HepG2PRPF8
chr3128968639128968727+intron-Distal,intron-Proximal5.0190510.21769HepG2EFTUD2
chr3128986884128986922+intron-Distal,intron-Proximal5.582408.34710K562AQR
chr3128973654128973692+intron-Distal,intron-Proximal5.206366.83960K562AQR
chr3128990551128990605+intron-Distal,intron-Proximal5.170237.84160HepG2SF3B4
chr3128985942128985983+intron-Distal,intron-Proximal6.188279.95272K562AQR
chr3128973675128973716+intron-Distal,intron-Proximal4.583314.24670HepG2SF3B4
chr3128990768128990794+intron-Distal,intron-Proximal5.373115.17615K562AQR
chr3128986024128986063+intron-Distal,intron-Proximal4.467666.99120K562AQR
chr3128973763128973817+intron-Proximal3.221203.60305HepG2SF3B4
chr3128994140128994181+intron-Proximal5.603319.95272K562AQR
chr3128974999128975038+intron-Proximal4.268386.99120K562AQR
chr3128976754128976784+intron-Proximal4.2683813.60040K562AQR
chr3128979247128979303+intron-Proximal4.9535317.69855K562AQR
chr3128979113128979176+intron-Proximal3.378797.11699K562SF3B4
chr3128982669128982740+intron-Proximal3.754753.57857HepG2SF3B4
chr3128976731128976754+intron-Proximal5.4260626.03057K562AQR
chr3128973593128973628+intron-Proximal5.812118.34710K562AQR
chr3128982695128982722+intron-Proximal5.032205.40008K562SF3B4
chr3128991260128991273+intron-Proximal4.955115.69951K562AQR
chr3128979652128979699+intron-Proximal3.097828.13694K562AQR
chr3128971800128971836+intron-Proximal4.319795.97994K562AQR
chr3128976703128976711+intron-Proximal6.1813714.90826K562AQR
chr3128973468128973488+intron-Proximal3.907394.51027K562BUD13
chr3128991273128991295+intron-Proximal5.172066.75320K562AQR
chr3128971214128971246+intron-Proximal5.842339.95272K562AQR
chr3128973586128973628+intron-Proximal3.875016.95612HepG2PRPF8
chr3128971537128971578+intron-Proximal5.634817.28294K562AQR
chr3128968598128968627+intron-Proximal5.235957.81134HepG2AQR
chr3128976705128976732+intron-Proximal4.282514.28193HepG2AQR
chr3128976711128976731+intron-Proximal6.5591518.99425K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COPG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COPG1 is not available on ENCORE database.

  • 79 RBPs can affect the levels of COPG1.  








The Knockdown/knockout RNA-Seq assay for COPG1 is not available on ENCORE database.





79 RBPs can affect the gene expression of COPG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COPG1ENSG00000181789.102936.128503312.42780-0.174002.210501.65430HepG2ACO1
COPG1ENSG00000181789.101534.871102441.56240-0.669708.897707.23800HepG2ADAR
COPG1ENSG00000181789.103171.574704444.61560-0.486904.233703.59480HepG2AKAP1
COPG1ENSG00000181789.102799.692003327.98720-0.249403.490702.64030HepG2AKAP8L
COPG1ENSG00000181789.102224.225002906.86220-0.386203.923303.22360HepG2BOP1
COPG1ENSG00000181789.103098.897004047.28860-0.385202.495401.57670HepG2CCAR1
COPG1ENSG00000181789.101338.153301789.21690-0.419104.227102.92800HepG2CSTF2
COPG1ENSG00000181789.102529.114003063.51930-0.276604.867003.80210HepG2DDX19B
COPG1ENSG00000181789.101970.307302642.86120-0.423705.363004.08520HepG2DDX24
COPG1ENSG00000181789.102634.840003169.09480-0.266403.865203.09030HepG2DKC1
COPG1ENSG00000181789.104848.671603515.736600.463704.592803.83980HepG2EIF2S1
COPG1ENSG00000181789.102076.413402550.07290-0.296402.897801.79380HepG2EIF3G
COPG1ENSG00000181789.102318.583203247.00860-0.485906.061504.50840HepG2ESF1
COPG1ENSG00000181789.103482.805606056.80210-0.7983025.6348024.12090HepG2ETF1
COPG1ENSG00000181789.102740.710203236.83030-0.240002.071901.35080HepG2EWSR1
COPG1ENSG00000181789.102443.977503785.23400-0.631206.991205.82590HepG2FIP1L1
COPG1ENSG00000181789.101591.333702370.89180-0.575206.446404.59700HepG2FKBP4
COPG1ENSG00000181789.102797.046803861.13040-0.465104.802303.61480HepG2G3BP2
COPG1ENSG00000181789.101960.555902482.15810-0.340303.259802.56630HepG2HNRNPA1
COPG1ENSG00000181789.101521.271902760.88830-0.8599016.5709015.01250HepG2HNRNPC
COPG1ENSG00000181789.104580.433504080.918000.166502.894502.20790HepG2HNRNPL
COPG1ENSG00000181789.102323.964702742.63890-0.239003.191002.54350HepG2HNRNPU
COPG1ENSG00000181789.103148.449803943.78060-0.324902.218401.65040HepG2MATR3
COPG1ENSG00000181789.103634.906704442.52850-0.289503.395702.55300HepG2NOL12
COPG1ENSG00000181789.103591.189902544.027600.497202.586601.73570HepG2PABPC1
COPG1ENSG00000181789.102572.230303552.24720-0.4657010.500309.13510HepG2PRPF4
COPG1ENSG00000181789.103253.944103912.68420-0.266002.573402.04280HepG2PTBP1
COPG1ENSG00000181789.102668.035103373.92200-0.338606.942606.04320HepG2PUS1
COPG1ENSG00000181789.101340.485402699.09670-1.009708.502607.31000HepG2RAVER1
COPG1ENSG00000181789.102287.252805062.29560-1.1462049.9095048.24320HepG2RBM22
COPG1ENSG00000181789.102359.822704354.22590-0.8837015.4363014.35340HepG2NELFE
COPG1ENSG00000181789.102773.576304055.76140-0.548206.802405.89750HepG2RECQL
COPG1ENSG00000181789.102068.278703828.94980-0.8885019.3058017.83000HepG2RPLP0
COPG1ENSG00000181789.101558.062702053.65150-0.398404.323403.57180HepG2RPS19
COPG1ENSG00000181789.102228.179402833.33410-0.346603.206202.34460HepG2RPS2
COPG1ENSG00000181789.103164.215802442.472900.373408.303007.27620HepG2SAFB2
COPG1ENSG00000181789.103357.261404073.14320-0.278902.660602.07870HepG2SF3B4
COPG1ENSG00000181789.102181.151802848.38940-0.385109.720408.63100HepG2SMN1
COPG1ENSG00000181789.102937.193005717.55260-0.9610038.2922036.98960HepG2SRFBP1
COPG1ENSG00000181789.102123.499203074.67070-0.534004.430503.13510HepG2SRSF3
COPG1ENSG00000181789.103244.656604187.48330-0.368006.838505.91500HepG2SRSF5
COPG1ENSG00000181789.104307.367104963.97280-0.204703.218802.67530HepG2SSB
COPG1ENSG00000181789.102695.234403715.23440-0.463003.826902.33680HepG2SSRP1
COPG1ENSG00000181789.104200.587604762.15710-0.181002.190901.62570HepG2SUCLG1
COPG1ENSG00000181789.103127.661502555.511300.291402.530701.63030HepG2SUPT6H
COPG1ENSG00000181789.102546.205203822.09450-0.586007.692106.83370HepG2TAF15
COPG1ENSG00000181789.102407.962503237.71610-0.427204.485203.69480HepG2U2AF1
COPG1ENSG00000181789.101261.541801674.92590-0.408903.538702.68340HepG2UCHL5
COPG1ENSG00000181789.102165.203103242.66300-0.5827014.5945013.38080HepG2UTP3
COPG1ENSG00000181789.102327.673202791.29890-0.262002.081701.44480HepG2XRN2
COPG1ENSG00000181789.102423.047103505.63250-0.5329017.3139015.88470HepG2ZC3H8
COPG1ENSG00000181789.102779.566504008.66620-0.528302.023601.50640K562AQR
COPG1ENSG00000181789.102862.082903449.87040-0.269503.618702.88570K562DDX47
COPG1ENSG00000181789.104028.107103417.539200.237002.869201.52860K562DDX6
COPG1ENSG00000181789.101383.412001760.31210-0.347602.897301.51720K562DNAJC21
COPG1ENSG00000181789.103517.153004596.94950-0.386303.982702.85990K562EIF4G2
COPG1ENSG00000181789.102247.544601679.936800.419805.328403.41030K562FUS
COPG1ENSG00000181789.101947.116803662.41110-0.9115025.1835023.47570K562FXR1
COPG1ENSG00000181789.101577.940102562.09520-0.699303.687602.84560K562G3BP2
COPG1ENSG00000181789.102571.186301811.546100.505106.412305.20790K562GPKOW
COPG1ENSG00000181789.101314.383202183.86190-0.7325012.9296011.71580K562HNRNPC
COPG1ENSG00000181789.103177.721602650.079300.261902.000601.31930K562HSPD1
COPG1ENSG00000181789.104460.137603318.188300.426603.370002.19550K562IGF2BP2
COPG1ENSG00000181789.104369.758803374.430000.372803.980802.49490K562IGF2BP3
COPG1ENSG00000181789.102460.387803485.75950-0.502606.780105.43670K562MAGOH
COPG1ENSG00000181789.104183.424503516.492000.250402.699901.48650K562NCBP2
COPG1ENSG00000181789.104914.654403363.578800.547002.359301.45900K562PABPN1
COPG1ENSG00000181789.104097.440003408.039800.265702.685201.35760K562PCBP1
COPG1ENSG00000181789.102403.360903101.18420-0.367803.852102.69510K562PCBP2
COPG1ENSG00000181789.102175.316302630.82490-0.274302.728301.93330K562POLR2G
COPG1ENSG00000181789.102407.510201958.116500.298002.746801.84600K562PSIP1
COPG1ENSG00000181789.102572.221103386.74770-0.396903.521702.78310K562PTBP1
COPG1ENSG00000181789.103788.200905015.41360-0.404903.938602.96910K562PUF60
COPG1ENSG00000181789.104307.054305226.86990-0.279202.628401.69160K562PUM2
COPG1ENSG00000181789.102525.080003246.65310-0.362603.553302.59360K562RBM22
COPG1ENSG00000181789.101642.682403416.77790-1.0566021.3109018.46560K562NELFE
COPG1ENSG00000181789.104811.927803076.126000.645402.388901.30510K562SF1
COPG1ENSG00000181789.101326.969901723.08460-0.376902.573601.63760K562SF3B1
COPG1ENSG00000181789.104082.038203136.209700.380203.289402.12530K562SRSF5
COPG1ENSG00000181789.102507.223001960.107900.355104.914103.13100K562SSB
COPG1ENSG00000181789.101971.798902638.77370-0.420403.803702.83940K562SYNCRIP
COPG1ENSG00000181789.104039.473603241.200700.317502.874702.03850K562TIA1
COPG1ENSG00000181789.104002.610803181.455700.331202.757001.66800K562TRA2A
COPG1ENSG00000181789.102476.204402001.112300.307202.630401.71350K562TRIM56
COPG1ENSG00000181789.104162.681803297.415200.336106.234104.30210K562TROVE2
COPG1ENSG00000181789.104156.786303379.606600.298505.568004.58880K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COPG1 is not available on ENCORE database.





16 RBPs can affect the splicing of COPG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOPG1ENSG00000181789.10chr3+128969524128969577128968474128968589128971123128971204-0.067000.000750.02996excludedK562PRPF8
SECOPG1ENSG00000181789.10chr3+128969524128969737128968495128968589128971123128971204-0.064000.000270.00672excludedHepG2U2AF1
SECOPG1ENSG00000181789.10chr3+128969524128969577128968474128968589128971123128971204-0.052000.004410.04806excludedHepG2U2AF2
SECOPG1ENSG00000181789.10chr3+128969524128969737128968495128968589128971123128971204-0.051000.000840.05097excludedHepG2AKAP1
SECOPG1ENSG00000181789.10chr3+128969524128969737128968495128968589128971123128971204-0.056000.000250.01455excludedHepG2MATR3
SECOPG1ENSG00000181789.10chr3+128969524128969737128968495128968589128971123128971204-0.072000.000050.00254excludedHepG2SF3A3
SECOPG1ENSG00000181789.10chr3+128969524128969577128968474128968589128971123128971204-0.052000.000010.00088excludedHepG2SF3B4
SECOPG1ENSG00000181789.10chr3+128969524128969737128968495128968589128971123128971204-0.074000.000160.00892excludedK562TARDBP
SECOPG1ENSG00000181789.10chr3+128969524128969737128968495128968589128971123128971204-0.064000.001290.04751excludedHepG2HNRNPC
MXECOPG1ENSG00000181789.10chr3+128969524128969565128971123128971204128968474128968589128971465128971798-0.108000.000780.026882includedK562RBM15
MXECOPG1ENSG00000181789.10chr3+1289873371289874631289877741289878431289867791289868831289906091289907520.105000.000870.017781includedK562U2AF1
MXECOPG1ENSG00000181789.10chr3+1289873111289874631289877741289878431289858661289859421289906091289907520.122000.005930.072471includedK562U2AF1
MXECOPG1ENSG00000181789.10chr3+128969524128969560128971123128971204128968448128968589128971465128971537-0.112000.000600.084192includedK562UTP3
MXECOPG1ENSG00000181789.10chr3+128987337128987463128987774128987843128986779128986883128990609128990752-0.135000.001540.044982includedK562EFTUD2
MXECOPG1ENSG00000181789.10chr3+1289873371289874631289877741289878431289867791289868831289906091289907520.136000.000100.027141includedK562SDAD1
MXECOPG1ENSG00000181789.10chr3+1289873371289874631289877741289878431289867791289868831289906091289907520.136000.000560.030321includedK562SAFB
MXECOPG1ENSG00000181789.10chr3+128985866128985942128986779128986883128984391128984635128987337128987463-0.165000.000010.001252includedK562SAFB
MXECOPG1ENSG00000181789.10chr3+128985866128985942128986779128986883128984391128984635128987337128987463-0.138000.003570.069442includedK562PPIL4
MXECOPG1ENSG00000181789.10chr3+1289695241289695771289711231289712041289684741289685891289714651289717980.109000.004350.072951includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COPG1 is not avaliable on ENCORE database.