CNNM1

General Information

Gene Name       : CNNM1
Gene ID             : ENSG00000119946.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNNM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNNM1ENSG00000119946.100.000.010.01ENCSR000AEF
HepG2CNNM1ENSG00000119946.101.021.281.15ENCSR985KAT
K562CNNM1ENSG00000119946.100.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNNM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNNM1 RNA is bound by 3 proteins.  







eCLIP assay for CNNM1 is not avaliable on ENCORE database.





3 proteins are bound to CNNM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10101152908101153029+3'-UTR5.4965817.11308HepG2PCBP2
chr10101136723101136821+CDS,intron-Proximal6.3501113.12736HepG2PCBP2
chr10101124734101124808+CDS,intron-Proximal5.334998.72621HepG2PRPF8
chr10101125273101125364+intron-Distal4.235908.10553HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNNM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNNM1 is not available on ENCORE database.

  • 86 RBPs can affect the levels of CNNM1.  








The Knockdown/knockout RNA-Seq assay for CNNM1 is not available on ENCORE database.





86 RBPs can affect the gene expression of CNNM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNNM1ENSG00000119946.91389.19580814.127300.770808.314506.80830HepG2ABCF1
CNNM1ENSG00000119946.9318.75180163.331000.964506.503905.32580HepG2ASCC1
CNNM1ENSG00000119946.9419.00020666.72600-0.670108.772307.66310HepG2AUH
CNNM1ENSG00000119946.9119.62700332.67740-1.4756014.9898013.44460HepG2CALR
CNNM1ENSG00000119946.91126.42010393.647701.5167021.3835018.91230HepG2CCAR1
CNNM1ENSG00000119946.9873.72050568.731100.6193010.135709.02500HepG2CKAP4
CNNM1ENSG00000119946.9139.6426063.404101.139004.070403.13570HepG2CNOT7
CNNM1ENSG00000119946.9188.50860309.75790-0.716505.061404.23970HepG2CELF1
CNNM1ENSG00000119946.9151.34930333.03900-1.1378012.6268011.23200HepG2DAZAP1
CNNM1ENSG00000119946.9729.10580526.110900.470705.799304.65060HepG2DDX19B
CNNM1ENSG00000119946.9347.68370241.195700.527502.822702.13940HepG2DDX21
CNNM1ENSG00000119946.9268.98300189.091800.508302.046101.49960HepG2DDX3X
CNNM1ENSG00000119946.91470.96330730.647601.009407.611706.03090HepG2DDX59
CNNM1ENSG00000119946.9318.95890162.440800.973406.039605.15650HepG2DDX6
CNNM1ENSG00000119946.9685.56810544.242500.333002.616101.95540HepG2DKC1
CNNM1ENSG00000119946.9119.26300216.44360-0.859805.226204.28860HepG2DNAJC21
CNNM1ENSG00000119946.9507.65370156.151301.7008021.2619019.72580HepG2EIF2S1
CNNM1ENSG00000119946.9102.61760177.84410-0.793303.397602.40210HepG2EIF3D
CNNM1ENSG00000119946.9233.97990372.95760-0.672603.965501.82490HepG2EIF3H
CNNM1ENSG00000119946.9249.53600172.562200.532002.164901.59650HepG2EIF4A3
CNNM1ENSG00000119946.9475.90130765.52080-0.685809.519508.51370HepG2ETF1
CNNM1ENSG00000119946.9444.39850822.07560-0.887407.561306.35220HepG2FIP1L1
CNNM1ENSG00000119946.9234.91640644.51260-1.456108.219406.48160HepG2FTO
CNNM1ENSG00000119946.9321.15080174.118200.883105.559504.60130HepG2FXR1
CNNM1ENSG00000119946.9281.42860171.475700.714703.719002.67600HepG2G3BP2
CNNM1ENSG00000119946.982.08690187.02820-1.188006.240204.68640HepG2GNB2L1
CNNM1ENSG00000119946.91207.70370729.376500.727407.237506.23310HepG2GPKOW
CNNM1ENSG00000119946.9153.7116058.696901.388806.411604.71880HepG2GRSF1
CNNM1ENSG00000119946.9438.87440543.09470-0.307402.192901.31630HepG2HDGF
CNNM1ENSG00000119946.9177.19670306.08530-0.788605.833804.56020HepG2HNRNPA2B1
CNNM1ENSG00000119946.9145.9932052.370001.479007.538005.09510HepG2HNRNPAB
CNNM1ENSG00000119946.9150.59440243.06650-0.690703.234502.49140HepG2HNRNPC
CNNM1ENSG00000119946.9321.20560163.560900.973606.658105.60940HepG2HNRNPK
CNNM1ENSG00000119946.9151.79480303.36490-0.998908.998207.84950HepG2HNRNPL
CNNM1ENSG00000119946.9526.93370696.05640-0.401602.382301.79310HepG2HNRNPLL
CNNM1ENSG00000119946.9246.08670567.20340-1.2047016.2008014.23030HepG2HNRNPM
CNNM1ENSG00000119946.9377.72230164.174401.2020010.551709.32390HepG2IGF2BP2
CNNM1ENSG00000119946.937.67010154.07820-2.032206.418304.95500HepG2IGF2BP3
CNNM1ENSG00000119946.9311.91400246.641300.338601.945501.31730HepG2ILF2
CNNM1ENSG00000119946.9410.18370520.00560-0.342302.661401.65910HepG2KIF1C
CNNM1ENSG00000119946.91055.35690527.543501.000304.061302.53630HepG2KRR1
CNNM1ENSG00000119946.9277.95060415.75450-0.580903.016802.14630HepG2LARP4
CNNM1ENSG00000119946.9374.69010174.179001.105008.839907.68120HepG2MAGOH
CNNM1ENSG00000119946.9797.42520175.152202.1866036.7824034.68890HepG2MATR3
CNNM1ENSG00000119946.9274.46830665.34460-1.2775019.0064017.12650HepG2MSI2
CNNM1ENSG00000119946.9377.16550558.68990-0.566904.508002.95780HepG2NAA15
CNNM1ENSG00000119946.9470.94750179.276701.393309.600908.46090HepG2NCBP2
CNNM1ENSG00000119946.9214.15490330.24220-0.624904.120203.18860HepG2NOL12
CNNM1ENSG00000119946.9398.75140187.059001.091905.821104.19970HepG2NONO
CNNM1ENSG00000119946.9322.09430169.153900.929008.298807.34150HepG2PCBP1
CNNM1ENSG00000119946.9499.34630290.775900.780004.804003.46340HepG2PCBP2
CNNM1ENSG00000119946.978.86220147.07850-0.899204.058802.56140HepG2PKM
CNNM1ENSG00000119946.9141.82020215.36110-0.602703.078102.30450HepG2PPIL4
CNNM1ENSG00000119946.9444.51980172.116401.3688018.7524017.56780HepG2PTBP1
CNNM1ENSG00000119946.9234.18160334.66310-0.515103.497802.84640HepG2PUM1
CNNM1ENSG00000119946.91212.46330579.418801.0652030.5524028.90910HepG2PUS1
CNNM1ENSG00000119946.9398.97830639.82750-0.681407.905807.13450HepG2RBM22
CNNM1ENSG00000119946.988.82180169.18030-0.929604.437703.60050HepG2RBM25
CNNM1ENSG00000119946.9301.72830191.552400.655403.915003.29250HepG2NELFE
CNNM1ENSG00000119946.9246.17000178.398900.464402.070601.52730HepG2RECQL
CNNM1ENSG00000119946.9963.82970701.790900.457603.601702.83970HepG2RPLP0
CNNM1ENSG00000119946.9159.7233063.683501.326506.264505.06680HepG2RPS3A
CNNM1ENSG00000119946.9236.88360155.501000.607202.484501.73640HepG2RRP9
CNNM1ENSG00000119946.9111.39510305.29480-1.4545010.064907.34900HepG2RTF1
CNNM1ENSG00000119946.9147.75990215.02620-0.541302.647802.01480HepG2SAFB2
CNNM1ENSG00000119946.91347.22540450.813201.579306.779704.50260HepG2SF1
CNNM1ENSG00000119946.91055.24240688.964900.615006.396805.36090HepG2SF3B1
CNNM1ENSG00000119946.9290.04470179.202600.694604.339003.62370HepG2SF3B4
CNNM1ENSG00000119946.9145.78220273.78720-0.909203.301801.54890HepG2SLTM
CNNM1ENSG00000119946.9473.86730286.148900.727604.564103.30840HepG2SMNDC1
CNNM1ENSG00000119946.9314.89410187.045800.751405.198104.60200HepG2SRSF1
CNNM1ENSG00000119946.91086.40520627.412300.792008.028607.24260HepG2SSB
CNNM1ENSG00000119946.9765.08070526.015700.540403.813802.32590HepG2SSRP1
CNNM1ENSG00000119946.9152.74120262.22690-0.779703.096301.81930HepG2SUB1
CNNM1ENSG00000119946.9339.21590168.115901.012609.415208.47990HepG2TAF15
CNNM1ENSG00000119946.9947.20110678.409000.481404.015103.16150HepG2TARDBP
CNNM1ENSG00000119946.91319.09830234.599002.4912095.0000092.87740HepG2TIAL1
CNNM1ENSG00000119946.9378.91460236.721400.678606.085505.30710HepG2TRIM56
CNNM1ENSG00000119946.9195.92220308.00250-0.652703.708602.68260HepG2TUFM
CNNM1ENSG00000119946.91358.35280468.745901.534906.425604.84200HepG2U2AF2
CNNM1ENSG00000119946.9152.36040326.02510-1.097506.542305.22190HepG2UBE2L3
CNNM1ENSG00000119946.952.12650119.82100-1.200804.852903.84170HepG2UCHL5
CNNM1ENSG00000119946.9955.50370820.768900.219201.826801.31800HepG2UTP3
CNNM1ENSG00000119946.9176.18400308.59080-0.808604.296002.98910HepG2XRCC6
CNNM1ENSG00000119946.9465.54110576.41960-0.308202.363801.73720HepG2ZC3H8
CNNM1ENSG00000119946.9553.18020934.98210-0.7572015.6522014.61650HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNNM1 is not available on ENCORE database.





2 RBPs can affect the splicing of CNNM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNNM1ENSG00000119946.9chr10+1011475761011477601011368111011369751011500621011501640.243000.000220.00382includedHepG2U2AF2
SECNNM1ENSG00000119946.9chr10+1011475761011477601011368111011369751011500621011501640.211000.000970.09454includedHepG2HNRNPUL1
MXECNNM1ENSG00000119946.9chr10+1011475761011477601011500621011501641011368111011369751011511931011540850.454000.000830.006951includedHepG2U2AF2
MXECNNM1ENSG00000119946.9chr10+101136811101136975101147576101147760101124711101124759101150062101150164-0.321000.000720.014722includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNNM1 is not avaliable on ENCORE database.