CDC42BPB

General Information

Gene Name       : CDC42BPB
Gene ID             : ENSG00000198752.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDC42BPB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDC42BPBENSG00000198752.105.2810.858.06ENCSR000AEF
HepG2CDC42BPBENSG00000198752.1029.4017.2623.33ENCSR985KAT
K562CDC42BPBENSG00000198752.1012.2711.1111.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDC42BPB is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDC42BPB RNA is bound by 25 proteins.  







eCLIP assay for CDC42BPB is not avaliable on ENCORE database.





25 proteins are bound to CDC42BPB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr14103399088103399191-3'-UTR,intron-Distal3.100743.56709HepG2IGF2BP1
chr14103399129103399186-3'-UTR,intron-Distal4.341835.09222HepG2FXR2
chr14103399117103399200-3'-UTR,intron-Distal3.717556.58508HepG2DDX59
chr14103399094103399159-3'-UTR,intron-Distal4.442896.92189HepG2PCBP2
chr14103523669103523789-5'-UTR,intron-Distal3.746456.65067HepG2GRSF1
chr14103523713103523756-5'-UTR,intron-Distal4.021233.21205HepG2EIF3H
chr14103523701103523728-5'-UTR,intron-Distal3.815863.34184HepG2GRWD1
chr14103523537103523545-5'-UTR,intron-Distal5.194839.52277K562RPS3
chr14103523672103523779-5'-UTR,intron-Distal4.3442919.70553HepG2DDX3X
chr14103523525103523537-5'-UTR,intron-Distal5.194839.52277K562RPS3
chr14103523509103523637-5'-UTR,CDS,intron-Distal5.1990815.31047HepG2DDX3X
chr14103465956103465990-CDS,intron-Distal3.033763.40321HepG2GRWD1
chr14103442230103442281-CDS,intron-Distal,intron-Proximal3.213766.47139HepG2PPIG
chr14103434801103434837-CDS,intron-Distal,intron-Proximal4.982175.03746HepG2BCLAF1
chr14103470322103470401-CDS,intron-Distal,intron-Proximal4.091263.82050HepG2SF3B4
chr14103470337103470360-CDS,intron-Distal3.410644.69671HepG2PPIG
chr14103478435103478444-CDS,intron-Distal3.491343.68471HepG2BCLAF1
chr14103434851103434885-CDS,intron-Distal,intron-Proximal4.674835.41896HepG2FXR2
chr14103411950103412012-CDS,intron-Distal,intron-Proximal3.582404.98672K562AQR
chr14103438262103438341-CDS,intron-Distal3.338757.16988HepG2PPIG
chr14103434674103434696-CDS,intron-Distal,intron-Proximal3.885594.46864HepG2BCLAF1
chr14103434852103434909-CDS,intron-Distal,intron-Proximal4.084629.37631HepG2BCLAF1
chr14103442242103442259-CDS,intron-Distal3.584543.09866HepG2FXR2
chr14103447253103447329-CDS,intron-Distal3.938426.39499HepG2GRWD1
chr14103429400103429432-CDS,intron-Distal4.665305.37137HepG2BCLAF1
chr14103470349103470357-CDS,intron-Distal3.700203.34184HepG2GRWD1
chr14103405987103406017-CDS,intron-Distal3.130083.85127HepG2GRWD1
chr14103440464103440487-CDS,intron-Distal,intron-Proximal3.704304.76554HepG2BCLAF1
chr14103434673103434697-CDS,intron-Distal,intron-Proximal4.113176.74492HepG2FXR2
chr14103434860103434936-CDS,intron-Distal,intron-Proximal3.390884.44630K562ZNF622
chr14103406251103406318-CDS,intron-Distal,intron-Proximal3.647717.26133HepG2PRPF8
chr14103440444103440482-CDS,intron-Distal3.807363.48848HepG2FXR2
chr14103447110103447220-CDS,intron-Distal3.172534.67625HepG2ZNF800
chr14103442228103442282-CDS,intron-Distal,intron-Proximal3.491347.83567HepG2BCLAF1
chr14103474808103474850-CDS,intron-Distal,intron-Proximal3.290156.28230HepG2PPIG
chr14103523397103523493-CDS,intron-Distal4.782114.92107K562FXR2
chr14103438298103438359-CDS,intron-Distal3.692273.22245K562GRWD1
chr14103442219103442279-CDS,intron-Distal,intron-Proximal3.230983.94960HepG2EIF3H
chr14103434909103434958-CDS,intron-Distal,intron-Proximal4.492744.42734K562UCHL5
chr14103436542103436571-CDS,intron-Distal3.831783.01428K562UCHL5
chr14103465912103465962-CDS,intron-Distal3.170594.62864K562ZNF622
chr14103450062103450093-CDS,intron-Distal4.581126.01390HepG2GRWD1
chr14103430850103430904-CDS,intron-Distal5.542109.79220HepG2FXR2
chr14103434808103434831-CDS,intron-Distal,intron-Proximal3.860814.68575HepG2FXR2
chr14103447118103447209-CDS,intron-Distal3.6612411.21200HepG2GRWD1
chr14103442220103442358-CDS,intron-Distal,intron-Proximal3.7171910.53208K562UCHL5
chr14103470329103470361-CDS,intron-Distal,intron-Proximal3.591705.15500HepG2BCLAF1
chr14103442223103442278-CDS,intron-Distal,intron-Proximal3.745184.49887K562ZNF622
chr14103452823103452840-CDS,intron-Distal,intron-Proximal3.399144.45064HepG2GRWD1
chr14103436487103436517-CDS,intron-Distal,intron-Proximal4.103353.71613K562UCHL5
chr14103433459103433506-CDS,intron-Distal3.757166.97808HepG2BCLAF1
chr14103434846103434909-CDS,intron-Distal,intron-Proximal3.225913.70975K562UCHL5
chr14103447128103447191-CDS,intron-Distal5.6082010.83457HepG2FXR2
chr14103438284103438342-CDS,intron-Distal4.442174.90367K562ZNF622
chr14103433431103433495-CDS,intron-Distal4.058908.07615HepG2FXR2
chr14103432638103432668-CDS,intron-Distal4.054084.01763HepG2GRWD1
chr14103447107103447225-CDS,intron-Distal,intron-Proximal3.5082214.71474HepG2BCLAF1
chr14103410821103410888-CDS,intron-Distal,intron-Proximal3.996753.01266HepG2SF3B4
chr14103406563103406617-CDS,intron-Distal,intron-Proximal3.284295.77687HepG2PPIG
chr14103406657103406734-CDS,intron-Distal,intron-Proximal4.393178.45091HepG2SF3B4
chr14103406410103406451-CDS,intron-Distal4.870124.56100HepG2FXR2
chr14103474807103474888-CDS,intron-Distal,intron-Proximal4.5053213.80747HepG2BCLAF1
chr14103438298103438344-CDS,intron-Distal4.969146.58593HepG2BCLAF1
chr14103442021103442037-CDS,intron-Distal4.570615.03746HepG2BCLAF1
chr14103406645103406651-CDS,intron-Distal4.265833.29312HepG2FXR2
chr14103442221103442264-CDS,intron-Distal,intron-Proximal3.809515.19978HepG2BUD13
chr14103440455103440481-CDS,intron-Distal3.698833.14999HepG2GRWD1
chr14103438277103438367-CDS,intron-Distal3.287976.54511K562UCHL5
chr14103466400103466464-intron-Distal4.674115.07478HepG2U2AF2
chr14103414149103414205-intron-Distal,intron-Proximal4.833215.41835HepG2DDX59
chr14103414245103414466-intron-Distal3.893093.43867K562CSTF2T
chr14103411421103411476-intron-Distal3.269824.63569HepG2RBFOX2
chr14103412069103412116-intron-Distal,intron-Proximal4.100694.24670HepG2SF3B4
chr14103522952103523133-intron-Distal4.186933.91009K562HNRNPK
chr14103473914103473989-intron-Distal3.717544.09469HepG2XPO5
chr14103414422103414501-intron-Distal5.447267.82308HepG2DDX59
chr14103415213103415310-intron-Distal6.0119913.08650HepG2DDX59
chr14103402177103402289-intron-Distal4.184903.27946HepG2HNRNPM
chr14103411286103411371-intron-Distal3.916383.51767HepG2GRSF1
chr14103523041103523086-intron-Distal4.535703.60414HepG2DDX59
chr14103414425103414502-intron-Distal4.108514.33022HepG2HNRNPK
chr14103463392103463598-intron-Distal4.290424.78076K562HNRNPM
chr14103414146103414204-intron-Distal,intron-Proximal4.100694.24670HepG2SF3B4
chr14103410134103410201-intron-Distal,intron-Proximal3.721623.07287K562TIA1
chr14103444391103444449-intron-Distal,intron-Proximal3.390144.46957K562TIA1
chr14103414430103414508-intron-Distal4.444678.29206HepG2PCBP2
chr14103474222103474313-intron-Distal3.741533.14375HepG2RBFOX2
chr14103522967103523120-intron-Distal3.980809.27417HepG2HNRNPK
chr14103463465103463545-intron-Distal4.684903.97018HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDC42BPB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDC42BPB is not available on ENCORE database.

  • 75 RBPs can affect the levels of CDC42BPB.  








The Knockdown/knockout RNA-Seq assay for CDC42BPB is not available on ENCORE database.





75 RBPs can affect the gene expression of CDC42BPB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDC42BPBENSG00000198752.52715.434402014.746700.430509.722808.72410HepG2ACO1
CDC42BPBENSG00000198752.53040.689002116.338700.522704.500303.84390HepG2AKAP1
CDC42BPBENSG00000198752.53589.736502913.174800.301204.981704.10460HepG2AUH
CDC42BPBENSG00000198752.53384.754602159.484200.6483010.215309.16020HepG2BOP1
CDC42BPBENSG00000198752.53428.395801795.816200.9328034.0581032.31330HepG2CELF1
CDC42BPBENSG00000198752.51834.104101405.978700.383403.628202.85970HepG2DDX21
CDC42BPBENSG00000198752.51470.680502027.10550-0.462904.003403.26230HepG2DDX3X
CDC42BPBENSG00000198752.5992.904201264.59330-0.348902.785901.79840HepG2DHX30
CDC42BPBENSG00000198752.51537.774201299.538700.242702.987702.31480HepG2DNAJC2
CDC42BPBENSG00000198752.52541.364401673.964800.602206.611305.71810HepG2EIF2S1
CDC42BPBENSG00000198752.53216.820301801.362000.836408.555507.37880HepG2EIF4B
CDC42BPBENSG00000198752.52291.953401824.845600.328702.741301.92990HepG2EIF4G2
CDC42BPBENSG00000198752.53761.590803344.837100.169301.897401.37950HepG2ETF1
CDC42BPBENSG00000198752.53270.326302474.111800.402403.093902.28430HepG2FIP1L1
CDC42BPBENSG00000198752.51715.219701251.985500.454104.748903.73450HepG2FUBP3
CDC42BPBENSG00000198752.52543.734301731.511100.554805.347404.43610HepG2G3BP1
CDC42BPBENSG00000198752.51747.645601328.965200.395002.744301.73070HepG2GNB2L1
CDC42BPBENSG00000198752.52344.685901923.455800.285603.980902.82300HepG2HDGF
CDC42BPBENSG00000198752.51513.287701758.86700-0.217001.996301.41200HepG2HNRNPL
CDC42BPBENSG00000198752.52517.489301759.923600.516405.148804.25330HepG2IGF2BP2
CDC42BPBENSG00000198752.52444.045401652.094300.564902.163301.30270HepG2IGF2BP3
CDC42BPBENSG00000198752.51644.499401302.243100.336502.431301.37210HepG2LARP7
CDC42BPBENSG00000198752.52283.701101867.580500.290101.886001.33960HepG2MAGOH
CDC42BPBENSG00000198752.52475.753601877.929100.398602.866102.22450HepG2MATR3
CDC42BPBENSG00000198752.51301.451601901.71290-0.547205.972904.90010HepG2NSUN2
CDC42BPBENSG00000198752.51278.205201820.32750-0.510109.755608.43550HepG2PRPF4
CDC42BPBENSG00000198752.52532.119901718.291200.5593012.6325011.63190HepG2PTBP1
CDC42BPBENSG00000198752.53216.918601940.235100.7293032.5039030.92750HepG2PUM1
CDC42BPBENSG00000198752.52854.781401938.805500.558108.302507.16780HepG2PUM2
CDC42BPBENSG00000198752.52830.235901860.830600.604909.528008.46890HepG2QKI
CDC42BPBENSG00000198752.5924.639701430.81460-0.629903.443002.65820HepG2RAVER1
CDC42BPBENSG00000198752.53348.165202795.639300.260103.005402.47150HepG2RBM22
CDC42BPBENSG00000198752.52039.316801688.869200.271902.369201.74010HepG2RBM25
CDC42BPBENSG00000198752.52605.182201912.245900.446008.762207.89860HepG2NELFE
CDC42BPBENSG00000198752.52088.523701781.082800.229601.933201.40520HepG2RECQL
CDC42BPBENSG00000198752.53333.460102510.743700.408804.415503.58300HepG2RPLP0
CDC42BPBENSG00000198752.51901.193901239.045700.617608.924607.89610HepG2RPS19
CDC42BPBENSG00000198752.51984.872401448.191300.454703.901202.95720HepG2RPS2
CDC42BPBENSG00000198752.51604.564501243.420200.367802.734001.80150HepG2SERBP1
CDC42BPBENSG00000198752.52553.923001788.861000.5136011.4680010.39260HepG2SF3B4
CDC42BPBENSG00000198752.52129.194301752.548100.280804.541003.67670HepG2SLBP
CDC42BPBENSG00000198752.51895.347501519.001700.319205.475804.62240HepG2SMN1
CDC42BPBENSG00000198752.51995.277501461.111400.449402.867301.89250HepG2SMNDC1
CDC42BPBENSG00000198752.55129.478603157.526600.6999028.9614027.78540HepG2SRFBP1
CDC42BPBENSG00000198752.52393.335201804.640100.407207.597506.62810HepG2SRSF5
CDC42BPBENSG00000198752.51742.813601519.123000.198102.090001.59650HepG2SRSF9
CDC42BPBENSG00000198752.52218.326202741.40180-0.305405.099704.44500HepG2SSB
CDC42BPBENSG00000198752.52997.091002052.352700.5462016.4379015.12640HepG2SUCLG1
CDC42BPBENSG00000198752.51377.179702090.25210-0.602007.545206.42340HepG2TARDBP
CDC42BPBENSG00000198752.52290.408301785.646400.359103.906402.84580HepG2TUFM
CDC42BPBENSG00000198752.53031.064201890.099900.681308.154906.68870HepG2UBE2L3
CDC42BPBENSG00000198752.52928.588602280.529600.360706.986105.96020HepG2UPF1
CDC42BPBENSG00000198752.51131.391301451.98450-0.359902.745602.02290HepG2XRN2
CDC42BPBENSG00000198752.52040.765501796.488000.183802.056601.46450HepG2ZC3H8
CDC42BPBENSG00000198752.52884.789902508.140100.201703.025402.46100HepG2ZNF622
CDC42BPBENSG00000198752.51762.341401269.601000.473004.635403.02890K562ABCF1
CDC42BPBENSG00000198752.51229.317201573.91090-0.356502.992301.70040K562APOBEC3C
CDC42BPBENSG00000198752.51010.529201424.72240-0.495604.737904.00720K562AQR
CDC42BPBENSG00000198752.51048.05490816.418700.360204.017202.84330K562BCLAF1
CDC42BPBENSG00000198752.5780.32940619.375200.333202.358401.39590K562CSTF2
CDC42BPBENSG00000198752.52651.788802193.610000.273602.407201.49880K562CELF1
CDC42BPBENSG00000198752.5804.33530975.68380-0.278602.346901.78150K562FXR1
CDC42BPBENSG00000198752.5307.49240533.92140-0.796103.822402.96130K562G3BP2
CDC42BPBENSG00000198752.5969.439201360.78390-0.489205.135204.10210K562GRSF1
CDC42BPBENSG00000198752.5644.79040828.28700-0.361302.565601.98830K562HNRNPC
CDC42BPBENSG00000198752.5557.60460750.67130-0.428902.560201.66830K562HNRNPM
CDC42BPBENSG00000198752.5933.303901237.34390-0.406803.320802.45140K562HSPD1
CDC42BPBENSG00000198752.51141.13140792.441700.526003.779802.51070K562IGF2BP2
CDC42BPBENSG00000198752.51101.03610805.901300.450104.119802.59930K562IGF2BP3
CDC42BPBENSG00000198752.51013.070201228.18720-0.277802.965102.12870K562MTPAP
CDC42BPBENSG00000198752.5989.00700740.691800.417003.496002.39930K562PCBP2
CDC42BPBENSG00000198752.5813.221901233.61170-0.601205.437204.26450K562PCBP3
CDC42BPBENSG00000198752.5611.69510946.18990-0.629307.328106.04170K562POLR2G
CDC42BPBENSG00000198752.5517.50700713.10400-0.462502.437801.73280K562PRPF8
CDC42BPBENSG00000198752.5963.24600775.455500.312802.098401.37090K562RBM22
CDC42BPBENSG00000198752.51938.753901379.531200.4909010.632908.93460K562SRPK2
CDC42BPBENSG00000198752.5650.72080949.09790-0.544506.082304.85630K562SYNCRIP
CDC42BPBENSG00000198752.51054.42180802.498800.393802.918202.19190K562TARDBP
CDC42BPBENSG00000198752.51002.59500774.119500.373003.202902.31270K562TIA1
CDC42BPBENSG00000198752.51037.17020759.810400.448803.764502.46020K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDC42BPB is not available on ENCORE database.





8 RBPs can affect the splicing of CDC42BPB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDC42BPBENSG00000198752.5chr14-1034205341034206121034188341034189401034209381034210250.536000.000000.00300includedK562XRN2
SECDC42BPBENSG00000198752.5chr14-103420534103420612103418834103418940103420938103421025-0.138000.010900.09754excludedHepG2U2AF2
SECDC42BPBENSG00000198752.5chr14-103425967103426047103420938103421025103429397103429492-0.198000.000020.00049excludedHepG2U2AF2
SECDC42BPBENSG00000198752.5chr14-1034205341034206121034188341034189401034209381034210250.299000.000360.02835includedHepG2AKAP1
SECDC42BPBENSG00000198752.5chr14-103444462103444542103442219103442386103447109103447358-0.274000.000550.01034excludedK562PUS1
SECDC42BPBENSG00000198752.5chr14-1034205341034206121034188341034189401034209381034210250.313000.000010.00144includedHepG2PTBP1
SECDC42BPBENSG00000198752.5chr14-1034205341034206121034188341034189401034209381034210250.449000.000020.01364includedK562UCHL5
SECDC42BPBENSG00000198752.5chr14-1034205341034206121034188341034189401034209381034210250.278000.000140.00943includedHepG2SF3B4
A3SSCDC42BPBENSG00000198752.5chr14-1034044401034045351034044401034045111034046421034047480.191000.000910.00638longerK562AQR
A3SSCDC42BPBENSG00000198752.5chr14-1034498921034501241034498921034500931034528231034529170.093000.000280.00224longerK562AQR
A3SSCDC42BPBENSG00000198752.5chr14-1034403521034405561034403521034404861034420201034421400.079000.009090.04871longerK562AQR
MXECDC42BPBENSG00000198752.5chr14-103420938103421025103425967103426047103418834103418940103429397103429492-0.462000.000000.000002includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDC42BPB is not avaliable on ENCORE database.