CCDC6

General Information

Gene Name       : CCDC6
Gene ID             : ENSG00000108091.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC6ENSG00000108091.1025.6823.6524.66ENCSR000AEF
HepG2CCDC6ENSG00000108091.1010.1416.4013.27ENCSR985KAT
K562CCDC6ENSG00000108091.1016.4318.7317.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC6 RNA is bound by 25 proteins.  







eCLIP assay for CCDC6 is not avaliable on ENCORE database.





25 proteins are bound to CCDC6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr106155265861552706-3'-UTR,CDS,intron-Distal4.237668.98074K562IGF2BP2
chr106155266361552820-3'-UTR,CDS,intron-Distal3.502785.18196HepG2IGF2BP3
chr106155150361551542-3'-UTR,intron-Distal,intron-Proximal3.924463.97692K562IGF2BP1
chr106155184061551958-3'-UTR,intron-Distal3.1024814.48702K562FAM120A
chr106155160961551712-3'-UTR,intron-Distal3.295127.23673K562FAM120A
chr106155112961551189-3'-UTR,intron-Distal4.579359.25286K562PUM2
chr106154929361549340-3'-UTR,intron-Distal3.583144.50192K562FAM120A
chr106154961661549676-3'-UTR,intron-Distal4.473909.53653K562FAM120A
chr106155202161552099-3'-UTR,intron-Distal4.8616913.83696K562IGF2BP1
chr106155036161550463-3'-UTR,intron-Distal4.100744.23131HepG2IGF2BP1
chr106155217061552283-3'-UTR,intron-Distal5.6512513.07555K562IGF2BP1
chr106155266261552841-3'-UTR,CDS,intron-Distal3.7867918.27629HepG2IGF2BP1
chr106155132961551371-3'-UTR,intron-Distal4.316315.20626K562PUM2
chr106166617361666328-5'-UTR,CDS,intron-Distal3.286046.73212K562PUM1
chr106161236161612415-CDS,intron-Distal3.902274.93978HepG2BCLAF1
chr106155434861554356-CDS,intron-Distal,intron-Proximal3.760649.76876K562YBX3
chr106161231061612340-CDS,intron-Distal,intron-Proximal4.054103.38968HepG2BCLAF1
chr106156667961566835-CDS,intron-Distal,intron-Proximal3.321795.63601K562ZNF800
chr106166595661666045-CDS,intron-Distal3.274836.24463HepG2GRWD1
chr106157446461574515-CDS,intron-Distal,intron-Proximal3.050894.22851HepG2BCLAF1
chr106159232861592404-CDS,intron-Distal4.906386.58593HepG2BCLAF1
chr106157440661574467-CDS,intron-Distal,intron-Proximal3.071694.28697K562ZNF622
chr106161242261612470-CDS,intron-Distal,intron-Proximal5.188678.92460K562U2AF2
chr106156678061566849-CDS,intron-Distal,intron-Proximal3.315965.07297K562BUD13
chr106156668261566837-CDS,intron-Distal,intron-Proximal3.552547.85262K562UCHL5
chr106156417761564211-CDS,intron-Distal,intron-Proximal3.133858.84912K562YBX3
chr106156669461566836-CDS,intron-Distal3.900955.97027HepG2GRWD1
chr106155433361554348-CDS,intron-Distal4.0355111.90805K562YBX3
chr106156420761564273-CDS,intron-Distal4.686164.66217K562ZNF800
chr106155429561554333-CDS,intron-Distal4.7257214.02980K562YBX3
chr106156666961566826-CDS,intron-Distal,intron-Proximal3.3289812.56268K562ZNF622
chr106166586361665886-CDS,intron-Distal4.930476.57024HepG2AQR
chr106157444961574514-CDS,intron-Distal,intron-Proximal3.307325.17903K562UCHL5
chr106166606961666117-CDS,intron-Distal3.282483.00939K562ZNF800
chr106159228261592328-CDS,intron-Distal,intron-Proximal3.593116.39464HepG2BCLAF1
chr106161241461612471-CDS,intron-Distal,intron-Proximal3.661686.16549HepG2U2AF2
chr106155270661552834-CDS,intron-Distal5.5975428.19707K562IGF2BP2
chr106157239461572469-CDS,intron-Distal3.304177.86771K562ZNF622
chr106157440961574464-CDS,intron-Distal,intron-Proximal4.372825.35703HepG2BCLAF1
chr106161882861618948-intron-Distal4.596445.18780K562AGGF1
chr106163653561636656-intron-Distal3.911134.52298HepG2QKI
chr106164482461644872-intron-Distal5.5671518.26852K562PTBP1
chr106164219661642283-intron-Distal3.668327.29335K562MATR3
chr106164169761641792-intron-Distal5.9060515.77934HepG2PTBP1
chr106157430661574374-intron-Distal,intron-Proximal3.221093.20028K562TARDBP
chr106164171461641778-intron-Distal4.890286.26399K562MATR3
chr106161935561619496-intron-Distal4.854877.38844HepG2PTBP1
chr106157233761572393-intron-Distal,intron-Proximal3.860594.00320K562AQR
chr106165940961659457-intron-Distal3.895933.76295K562LIN28B
chr106157372061573796-intron-Distal4.122444.13641K562TARDBP
chr106161935861619472-intron-Distal4.563245.70028HepG2MATR3
chr106166546961665541-intron-Distal4.143683.91243HepG2NKRF
chr106158201161582152-intron-Distal4.088783.92684K562KHSRP
chr106164169961641790-intron-Distal3.060034.69218HepG2MATR3
chr106161937661619510-intron-Distal4.830324.90095K562PTBP1
chr106164168361641784-intron-Distal5.7281222.19298K562PTBP1
chr106164207461642121-intron-Distal4.893085.39854K562PTBP1
chr106164206561642124-intron-Distal4.541827.83927K562MATR3
chr106163379761633899-intron-Distal3.078863.50893K562TARDBP
chr106164481761644903-intron-Distal5.4414010.27742HepG2PTBP1
chr106164168961641769-intron-Distal3.932156.43614HepG2PCBP2
chr106164182761641866-intron-Distal5.004284.40618K562PTBP1
chr106166271361662823-intron-Distal3.474194.72639K562KHSRP
chr106166583861665863-intron-Distal4.804706.23935HepG2AQR
chr106164184061641887-intron-Distal4.342946.16211K562MATR3
chr106166517161665264-intron-Distal3.716625.79195K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC6 is not available on ENCORE database.

  • 95 RBPs can affect the levels of CCDC6.  








The Knockdown/knockout RNA-Seq assay for CCDC6 is not available on ENCORE database.





95 RBPs can affect the gene expression of CCDC6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC6ENSG00000108091.101160.863501984.08020-0.773308.304507.43720HepG2AKAP1
CCDC6ENSG00000108091.101661.003802065.39180-0.314404.496903.65800HepG2AUH
CCDC6ENSG00000108091.101641.403202262.55710-0.463003.174602.12520HepG2CCAR1
CCDC6ENSG00000108091.10922.852001249.57590-0.437307.146106.16830HepG2CKAP4
CCDC6ENSG00000108091.10928.965301392.44410-0.583903.410702.55480HepG2CNOT7
CCDC6ENSG00000108091.10958.778001237.49420-0.368204.004402.77630HepG2YBX3
CCDC6ENSG00000108091.101339.368101630.89510-0.284104.284703.39490HepG2DAZAP1
CCDC6ENSG00000108091.10979.859501155.93280-0.238402.504301.70790HepG2DDX19B
CCDC6ENSG00000108091.101341.463301082.897100.308802.261901.64020HepG2DDX21
CCDC6ENSG00000108091.101396.521701059.548300.398303.893802.79770HepG2DDX24
CCDC6ENSG00000108091.10955.802201900.64800-0.9917014.9352013.59490HepG2DDX3X
CCDC6ENSG00000108091.10837.807201211.98690-0.532703.691702.81200HepG2DDX55
CCDC6ENSG00000108091.101095.088301632.58000-0.576104.865004.06670HepG2DDX6
CCDC6ENSG00000108091.10788.671501172.02730-0.571506.257604.82600HepG2DHX30
CCDC6ENSG00000108091.10898.373901215.18840-0.435805.407204.45320HepG2DNAJC21
CCDC6ENSG00000108091.10857.739001204.36800-0.489706.523905.58150HepG2DNAJC2
CCDC6ENSG00000108091.101154.589901569.55390-0.443003.491402.83020HepG2EIF2S1
CCDC6ENSG00000108091.101372.902101734.59720-0.337401.985401.44100HepG2EIF4A3
CCDC6ENSG00000108091.101184.823401688.76750-0.511303.296002.54800HepG2EIF4B
CCDC6ENSG00000108091.101269.378901541.18020-0.279902.025201.32100HepG2EIF4G2
CCDC6ENSG00000108091.101940.436002371.36810-0.289303.903103.20980HepG2ETF1
CCDC6ENSG00000108091.10627.65830795.87910-0.342602.657101.51410HepG2FAM120A
CCDC6ENSG00000108091.10816.299901623.44000-0.9919013.7181012.29890HepG2G3BP1
CCDC6ENSG00000108091.101418.196102088.97280-0.558703.575902.85710HepG2GPKOW
CCDC6ENSG00000108091.101017.574501226.82930-0.269801.940101.38810HepG2HNRNPA1
CCDC6ENSG00000108091.101137.897301498.75450-0.397405.719204.45600HepG2HNRNPA2B1
CCDC6ENSG00000108091.10978.872001364.59090-0.479304.706203.81820HepG2HNRNPC
CCDC6ENSG00000108091.101197.508601427.83760-0.253802.781602.06280HepG2HNRNPF
CCDC6ENSG00000108091.101313.457901643.67320-0.323602.384001.73320HepG2HNRNPK
CCDC6ENSG00000108091.101177.390601485.67390-0.335505.457604.53840HepG2HNRNPL
CCDC6ENSG00000108091.101531.983901993.52950-0.379902.130201.57030HepG2HNRNPLL
CCDC6ENSG00000108091.10940.697301355.57130-0.527109.182108.12700HepG2HNRNPU
CCDC6ENSG00000108091.101321.505601650.22280-0.320502.138401.53540HepG2IGF2BP2
CCDC6ENSG00000108091.101060.534201384.67630-0.384806.643905.55750HepG2ILF2
CCDC6ENSG00000108091.10841.018901357.49530-0.690705.090703.27480HepG2ILF3
CCDC6ENSG00000108091.101860.999302388.61780-0.360102.193301.46090HepG2LARP4
CCDC6ENSG00000108091.101277.971601801.89240-0.495704.170003.39830HepG2NCBP2
CCDC6ENSG00000108091.101275.558901617.18280-0.342403.918703.01080HepG2NOL12
CCDC6ENSG00000108091.101194.944901767.51960-0.564803.548102.70120HepG2NSUN2
CCDC6ENSG00000108091.10882.258001341.82080-0.6049011.056709.55340HepG2PARN
CCDC6ENSG00000108091.102043.748801625.823100.329904.851404.08300HepG2PCBP1
CCDC6ENSG00000108091.10997.017301209.06650-0.278202.551601.84050HepG2PPIL4
CCDC6ENSG00000108091.101893.500101654.368000.194701.973601.49750HepG2PTBP1
CCDC6ENSG00000108091.101245.045201637.48050-0.395302.595101.94490HepG2PUM2
CCDC6ENSG00000108091.101168.001501791.65280-0.6172010.539409.43300HepG2QKI
CCDC6ENSG00000108091.10763.257701308.38720-0.777505.940204.58760HepG2RPS10
CCDC6ENSG00000108091.10877.033401398.31680-0.673005.340004.22270HepG2RPS3A
CCDC6ENSG00000108091.10831.126301207.21370-0.538509.522508.43900HepG2SAFB2
CCDC6ENSG00000108091.101233.751501973.30030-0.677604.763003.85820HepG2SF3B1
CCDC6ENSG00000108091.101023.375801407.84490-0.460208.673907.63590HepG2SMN1
CCDC6ENSG00000108091.101280.721502238.61100-0.8056025.6784024.55310HepG2SRFBP1
CCDC6ENSG00000108091.101464.804502122.99390-0.535403.299402.19490HepG2SRSF3
CCDC6ENSG00000108091.101146.194401524.10420-0.411106.343705.44930HepG2SRSF5
CCDC6ENSG00000108091.101137.385401402.82650-0.302603.664002.87980HepG2SRSF7
CCDC6ENSG00000108091.101550.772301943.63020-0.325804.866404.22300HepG2SSB
CCDC6ENSG00000108091.10594.84680808.73330-0.443102.389301.45590HepG2TFIP11
CCDC6ENSG00000108091.10723.648501317.30280-0.8642016.3954015.36060HepG2TIAL1
CCDC6ENSG00000108091.101021.513301328.95830-0.379605.213804.48940HepG2TRIM56
CCDC6ENSG00000108091.101924.497901544.463700.317302.400101.81130HepG2U2AF1
CCDC6ENSG00000108091.10747.122801104.93380-0.564503.110902.04550HepG2UPF2
CCDC6ENSG00000108091.101644.616101411.157900.220802.354801.79240HepG2UTP3
CCDC6ENSG00000108091.10831.238301187.71760-0.514903.930503.07450HepG2XRN2
CCDC6ENSG00000108091.101022.660201378.48430-0.430807.247906.24540HepG2ZC3H8
CCDC6ENSG00000108091.101629.333101225.294600.411103.912802.47950K562AARS
CCDC6ENSG00000108091.102455.800302131.714500.204102.288701.76470K562AGGF1
CCDC6ENSG00000108091.101049.164701566.44540-0.5783010.407207.58890K562AKAP1
CCDC6ENSG00000108091.101789.235302547.55460-0.509807.807805.81850K562CCDC124
CCDC6ENSG00000108091.104462.739402978.017600.5835016.7238015.24290K562DDX47
CCDC6ENSG00000108091.10699.495101502.61860-1.1031017.0024013.47190K562DDX51
CCDC6ENSG00000108091.102919.630802386.945500.290503.750202.70830K562DKC1
CCDC6ENSG00000108091.101043.829201439.97890-0.464202.905701.59060K562EEF2
CCDC6ENSG00000108091.101551.451201847.92960-0.252302.553201.85710K562EIF2S2
CCDC6ENSG00000108091.101351.31150816.555200.726604.706903.35850K562EIF3A
CCDC6ENSG00000108091.101922.102601489.793500.367502.527901.54440K562EIF3D
CCDC6ENSG00000108091.101733.443701303.018900.411704.157003.19020K562EIF3G
CCDC6ENSG00000108091.102249.624201658.221500.439904.787203.70720K562EIF4A3
CCDC6ENSG00000108091.103626.522903134.429000.210302.827301.87890K562EIF4G2
CCDC6ENSG00000108091.101752.540101394.006100.330103.200801.47890K562FASTKD2
CCDC6ENSG00000108091.101500.923602263.08480-0.592405.364604.15790K562FIP1L1
CCDC6ENSG00000108091.102377.082201651.615800.525203.935103.05620K562G3BP2
CCDC6ENSG00000108091.101592.295702007.25380-0.334103.026702.19710K562GPKOW
CCDC6ENSG00000108091.101910.138602462.66770-0.366503.823802.93960K562GRSF1
CCDC6ENSG00000108091.101172.755301861.30740-0.666407.181005.57030K562HNRNPM
CCDC6ENSG00000108091.101027.327301713.93370-0.738406.695605.17480K562KRR1
CCDC6ENSG00000108091.102465.908001895.281100.379603.653402.67940K562MAGOH
CCDC6ENSG00000108091.103284.485802637.109100.316603.314102.30170K562MBNL1
CCDC6ENSG00000108091.101692.778601986.27330-0.230702.830802.01220K562MTPAP
CCDC6ENSG00000108091.101748.442602568.88720-0.555106.451605.10670K562PPIG
CCDC6ENSG00000108091.10937.593601201.93170-0.358302.684901.79710K562PSIP1
CCDC6ENSG00000108091.102661.090003564.21240-0.421606.990305.44560K562PUM2
CCDC6ENSG00000108091.102811.814402199.865500.354003.192502.61620K562PUS1
CCDC6ENSG00000108091.102525.898302143.366600.236802.373901.81770K562RBM15
CCDC6ENSG00000108091.101052.465401283.41160-0.286202.981501.32210K562RPS10
CCDC6ENSG00000108091.102031.733601379.199400.558805.221004.09580K562RPS19
CCDC6ENSG00000108091.101889.016601384.411500.448302.930001.56380K562RRP9
CCDC6ENSG00000108091.101644.323701299.979300.338902.977601.85520K562SAFB
CCDC6ENSG00000108091.102576.956102177.619900.242802.725601.91600K562SF3A3
CCDC6ENSG00000108091.101800.338402231.00390-0.309405.271404.02750K562SRPK2
CCDC6ENSG00000108091.101926.039301463.341900.396304.739903.66010K562SYNCRIP
CCDC6ENSG00000108091.102120.534601601.154300.405202.336401.34310K562U2AF1
CCDC6ENSG00000108091.102071.052301653.577900.324703.443602.54940K562U2AF2
CCDC6ENSG00000108091.102386.589602082.182200.196802.342901.55950K562WDR43
CCDC6ENSG00000108091.102033.456502686.02190-0.401504.324403.20750K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC6 is not available on ENCORE database.





1 RBPs can affect the splicing of CCDC6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECCDC6ENSG00000108091.10chr10-6155423061554355615641776156427861548520615528696156667961566836-0.315000.000030.000392includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC6 is not avaliable on ENCORE database.