BNIP2

General Information

Gene Name       : BNIP2
Gene ID             : ENSG00000140299.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BNIP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BNIP2ENSG00000140299.1164.9256.0860.50ENCSR000AEF
HepG2BNIP2ENSG00000140299.1120.3729.9825.18ENCSR985KAT
K562BNIP2ENSG00000140299.1136.7235.2936.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BNIP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BNIP2 RNA is bound by 14 proteins.  







eCLIP assay for BNIP2 is not avaliable on ENCORE database.





14 proteins are bound to BNIP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr155995566959955705-3'-UTR,intron-Distal5.6847915.30625K562PUM2
chr155995509559955184-3'-UTR,intron-Distal4.4754510.12999K562PABPC4
chr155995546359955550-3'-UTR,intron-Distal,intron-Proximal4.8768265.00482K562PUM2
chr155995516359955201-3'-UTR,intron-Distal5.6937611.25684K562PUM2
chr155995537459955418-3'-UTR,intron-Distal5.0526926.60356K562PUM2
chr155995608559956127-3'-UTR,intron-Distal4.073609.09006K562PUM2
chr155996147459961526-3'-UTR,CDS,intron-Distal,intron-Proximal4.381363.89826HepG2BCLAF1
chr155995541859955463-3'-UTR,intron-Distal4.7079325.29520K562PUM2
chr155995513959955260-3'-UTR,intron-Distal3.834807.63804HepG2FUBP3
chr155995137359951458-3'-UTR,intron-Distal5.108798.47376K562PUM2
chr155995570559955752-3'-UTR,intron-Distal4.8496020.03557K562PUM2
chr155995510959955197-3'-UTR,intron-Distal3.141257.47863K562KHSRP
chr155997013459970233-5'-UTR,CDS,intron-Distal,intron-Proximal3.906366.12731K562UCHL5
chr155998141659981508-5'-UTR,CDS,intron-Distal,intron-Proximal4.495374.66602K562DDX3X
chr155998124359981365-5'-UTR,CDS,intron-Distal3.842687.77750HepG2PRPF8
chr155998140959981511-5'-UTR,CDS,intron-Distal,intron-Proximal4.340437.63030HepG2DDX3X
chr155998132159981410-5'-UTR,CDS,intron-Distal3.846563.60441HepG2GRWD1
chr155997099359971071-5'-UTR,CDS,intron-Distal,intron-Proximal3.214575.40232HepG2U2AF2
chr155998136759981416-5'-UTR,CDS,intron-Distal4.375218.86236K562DDX3X
chr155998136359981410-5'-UTR,CDS,intron-Distal5.099117.58445K562RBM15
chr155997243859972478-CDS,intron-Distal,intron-Proximal3.859955.40651HepG2PPIG
chr155997247859972511-CDS,intron-Distal,intron-Proximal3.499723.93645HepG2PPIG
chr155997188059971968-CDS,intron-Distal,intron-Proximal3.793565.24452HepG2PPIG
chr155997189859971969-CDS,intron-Distal,intron-Proximal3.792394.20387K562ZNF622
chr155997179959971888-CDS,intron-Distal4.533788.47938HepG2BCLAF1
chr155997243659972470-CDS,intron-Distal,intron-Proximal4.814885.78736K562ZNF622
chr155997460659974616-CDS,intron-Distal,intron-Proximal3.098404.44630K562ZNF622
chr155997243759972486-CDS,intron-Distal,intron-Proximal4.2526610.89658HepG2BCLAF1
chr155997243959972508-CDS,intron-Distal,intron-Proximal3.577494.41784HepG2GRWD1
chr155997194559971969-CDS,intron-Distal,intron-Proximal3.427915.56491HepG2BCLAF1
chr155997078059970826-intron-Distal3.578403.02234K562KHSRP
chr155995642159956484-intron-Distal3.930233.89294K562KHSRP
chr155996100059961067-intron-Distal,intron-Proximal3.138553.28806K562KHSRP
chr155997705959977111-intron-Distal3.869823.31110K562TIA1
chr155997115859971247-intron-Distal3.604075.61949K562KHSRP
chr155997549559975635-intron-Distal4.916467.17304K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BNIP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BNIP2 is not available on ENCORE database.

  • 79 RBPs can affect the levels of BNIP2.  








The Knockdown/knockout RNA-Seq assay for BNIP2 is not available on ENCORE database.





79 RBPs can affect the gene expression of BNIP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BNIP2ENSG00000140299.71383.132101094.659500.337404.403703.67110HepG2ACO1
BNIP2ENSG00000140299.7733.456801099.84590-0.584509.376008.06630HepG2AKAP8L
BNIP2ENSG00000140299.7664.762501015.33210-0.611004.144003.00080HepG2BCCIP
BNIP2ENSG00000140299.71537.056801166.634100.397704.241603.31070HepG2CALR
BNIP2ENSG00000140299.7466.893401094.47370-1.2291038.8038036.98270HepG2CKAP4
BNIP2ENSG00000140299.7711.222401086.21200-0.610905.942804.97000HepG2CPSF6
BNIP2ENSG00000140299.7362.36820627.26920-0.791607.200805.58350HepG2CSTF2
BNIP2ENSG00000140299.71650.015201319.788300.322103.593802.88040HepG2CELF1
BNIP2ENSG00000140299.71126.714701419.29760-0.333103.995203.13030HepG2DAZAP1
BNIP2ENSG00000140299.7723.01100925.64610-0.356402.585501.92620HepG2DDX21
BNIP2ENSG00000140299.71861.890701233.470000.593903.135002.09510HepG2DDX59
BNIP2ENSG00000140299.7877.852601047.30600-0.254602.148401.53940HepG2DKC1
BNIP2ENSG00000140299.7723.48800930.80880-0.363503.495802.71260HepG2DNAJC21
BNIP2ENSG00000140299.7382.96010922.53590-1.2684036.7505034.62630HepG2DNAJC2
BNIP2ENSG00000140299.71134.59960852.344100.412602.412201.38290HepG2AGO1
BNIP2ENSG00000140299.7954.867301560.10980-0.708306.830605.82440HepG2EIF4A3
BNIP2ENSG00000140299.73130.328101871.641300.7419024.3332022.85400HepG2ETF1
BNIP2ENSG00000140299.7924.93430711.096800.379202.967202.15530HepG2FUBP3
BNIP2ENSG00000140299.7428.46170658.53340-0.620104.373403.23760HepG2GEMIN5
BNIP2ENSG00000140299.7531.27880944.14570-0.829507.599704.82820HepG2GRWD1
BNIP2ENSG00000140299.71188.868301478.13810-0.314202.194501.56670HepG2HNRNPK
BNIP2ENSG00000140299.71450.109901175.083300.303302.014601.46850HepG2HNRNPLL
BNIP2ENSG00000140299.71019.01680836.121600.285302.200501.35110HepG2HNRNPM
BNIP2ENSG00000140299.7810.143501038.34400-0.358004.065603.34180HepG2HNRNPU
BNIP2ENSG00000140299.7904.809701060.63700-0.229202.228801.56330HepG2ILF2
BNIP2ENSG00000140299.71603.037101109.114800.531302.702601.82620HepG2PABPC1
BNIP2ENSG00000140299.7990.57540799.279400.309503.004802.20320HepG2PRPF4
BNIP2ENSG00000140299.71635.362501343.394200.283602.051801.52670HepG2PUF60
BNIP2ENSG00000140299.71262.407501426.00680-0.175802.029601.50560HepG2PUM1
BNIP2ENSG00000140299.7927.968401114.98930-0.264902.709802.09830HepG2PUS1
BNIP2ENSG00000140299.71816.529101470.013600.305302.960702.31850HepG2QKI
BNIP2ENSG00000140299.72088.829901071.837100.962507.665306.52510HepG2RAVER1
BNIP2ENSG00000140299.72233.581901564.367900.513709.497408.66740HepG2RBM22
BNIP2ENSG00000140299.72263.938101334.076200.7629013.8688012.42550HepG2RBM25
BNIP2ENSG00000140299.71203.286601510.47560-0.328004.106903.47090HepG2NELFE
BNIP2ENSG00000140299.7806.233901108.03240-0.458703.291702.41890HepG2RPS2
BNIP2ENSG00000140299.71175.19270761.980700.625005.731104.63960HepG2RRP9
BNIP2ENSG00000140299.71980.562101339.251800.564404.249603.40410HepG2SF3A3
BNIP2ENSG00000140299.71691.359701163.117200.540105.963504.96080HepG2SF3B1
BNIP2ENSG00000140299.71980.554801294.165800.613804.112203.15000HepG2SNRNP70
BNIP2ENSG00000140299.71030.257501326.32770-0.364404.920504.12390HepG2SRSF5
BNIP2ENSG00000140299.71567.025101199.908000.385005.768105.02270HepG2SRSF9
BNIP2ENSG00000140299.71565.856501001.641200.644504.433302.90270HepG2SUB1
BNIP2ENSG00000140299.7713.989501209.12970-0.760006.429804.43000HepG2SUGP2
BNIP2ENSG00000140299.7449.73430818.40290-0.863705.023103.77500HepG2SUPT6H
BNIP2ENSG00000140299.71699.758801325.603600.358604.169803.50270HepG2TAF15
BNIP2ENSG00000140299.7430.395601009.01190-1.2292026.2986025.05170HepG2TIAL1
BNIP2ENSG00000140299.7803.109301017.96010-0.342003.774603.13800HepG2TRIM56
BNIP2ENSG00000140299.71450.485001036.562200.484603.352502.66650HepG2U2AF1
BNIP2ENSG00000140299.71001.864201389.01300-0.471403.633702.66720HepG2UBE2L3
BNIP2ENSG00000140299.7558.37540910.17370-0.704904.041302.81770HepG2UPF2
BNIP2ENSG00000140299.7745.552901146.68860-0.6211010.714509.65920HepG2UTP3
BNIP2ENSG00000140299.7589.01620978.28240-0.731906.520605.42390HepG2XRN2
BNIP2ENSG00000140299.71473.054801070.750700.460102.844001.52990HepG2ZRANB2
BNIP2ENSG00000140299.71349.276501580.92410-0.228602.268201.74620K562AGGF1
BNIP2ENSG00000140299.7644.72780984.08670-0.610108.991106.32780K562AKAP1
BNIP2ENSG00000140299.71043.225401645.01340-0.657008.823507.58440K562AKAP8L
BNIP2ENSG00000140299.71520.374102132.13970-0.487905.000403.25230K562APOBEC3C
BNIP2ENSG00000140299.72808.871201836.840500.612708.133807.21590K562AQR
BNIP2ENSG00000140299.7821.229701077.42300-0.391704.304102.60820K562BCCIP
BNIP2ENSG00000140299.7834.142401489.50780-0.836505.036103.02330K562CKAP4
BNIP2ENSG00000140299.71276.225601818.07440-0.510508.859906.87190K562CPEB4
BNIP2ENSG00000140299.7900.818401258.57040-0.482505.376504.29200K562CPSF6
BNIP2ENSG00000140299.7534.82180789.92430-0.562706.292104.60590K562CSTF2
BNIP2ENSG00000140299.7633.473301004.12220-0.664603.344401.46850K562DDX51
BNIP2ENSG00000140299.7974.923601169.11870-0.262102.385001.64350K562EIF3G
BNIP2ENSG00000140299.71279.620401083.448500.240002.130001.58650K562FXR1
BNIP2ENSG00000140299.71981.114101074.950300.881907.959806.63550K562G3BP2
BNIP2ENSG00000140299.7563.49790932.39830-0.726504.605802.74070K562GEMIN5
BNIP2ENSG00000140299.71112.982301823.05480-0.7119011.183909.63880K562GRSF1
BNIP2ENSG00000140299.7455.11270835.75050-0.8768011.163807.70770K562GRWD1
BNIP2ENSG00000140299.7678.65160961.56610-0.502704.752603.99070K562HNRNPC
BNIP2ENSG00000140299.7500.383901026.06100-1.0360010.488008.54850K562KRR1
BNIP2ENSG00000140299.7709.52370975.27180-0.459003.550901.83510K562LIN28B
BNIP2ENSG00000140299.71173.217401518.45470-0.372103.476202.52870K562MAGOH
BNIP2ENSG00000140299.71214.498101515.37020-0.319302.815801.88480K562MATR3
BNIP2ENSG00000140299.7856.106401172.91290-0.454204.414803.29020K562METAP2
BNIP2ENSG00000140299.7831.022601284.54760-0.628309.952008.52290K562MTPAP
BNIP2ENSG00000140299.71284.858901040.288700.304502.663001.45810K562NCBP2
BNIP2ENSG00000140299.71145.308801427.13790-0.317404.316803.40790K562NSUN2
BNIP2ENSG00000140299.71137.310501524.59830-0.422803.829102.84130K562PPIG
BNIP2ENSG00000140299.71424.12700905.025300.653906.210105.08540K562PRPF8
BNIP2ENSG00000140299.71111.212101475.27580-0.408904.364003.54740K562PTBP1
BNIP2ENSG00000140299.73277.385102636.383700.313903.329902.43660K562PUF60
BNIP2ENSG00000140299.71077.163801631.47170-0.598907.065406.24370K562PUS1
BNIP2ENSG00000140299.7978.387801414.59910-0.531905.752404.48590K562RBM22
BNIP2ENSG00000140299.71090.095701463.70830-0.425203.649002.83290K562TARDBP
BNIP2ENSG00000140299.7985.195801411.91360-0.519206.392905.07390K562TIA1
BNIP2ENSG00000140299.7334.21600829.24030-1.3110018.4293015.82640K562TIAL1
BNIP2ENSG00000140299.7672.02000880.97800-0.390602.876101.90860K562TRIM56
BNIP2ENSG00000140299.71335.384601042.763500.356702.291601.30880K562U2AF1
BNIP2ENSG00000140299.7932.879501513.23330-0.6979015.6838014.13830K562UPF1
BNIP2ENSG00000140299.7666.85480944.29900-0.501902.747001.54700K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BNIP2 is not available on ENCORE database.





23 RBPs can affect the splicing of BNIP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.267000.000000.00020excludedK562SF3B4
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.146000.001190.04289excludedK562PRPF8
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.066000.001050.06244excludedHepG2RBM22
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.121000.003780.08498excludedK562AKAP8L
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.233000.000020.01046excludedK562WDR43
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961225-0.051000.000750.06106excludedHepG2QKI
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.135000.002140.02671excludedHepG2U2AF2
SEBNIP2ENSG00000140299.7chr15-599614745996156159961090599611895996338159963574-0.065000.000050.00097excludedK562AQR
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961189-0.178000.000000.00000excludedK562AQR
SEBNIP2ENSG00000140299.7chr15-5997094659971033599701095997028659971790599719670.056000.000010.00283includedHepG2DDX3X
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961145-0.194000.000150.03912excludedK562HNRNPA1
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.317000.000000.00006excludedK562MTPAP
SEBNIP2ENSG00000140299.7chr15-5997094659971033599701095997028659971790599719670.051000.000040.00518includedHepG2NCBP2
SEBNIP2ENSG00000140299.7chr15-5995754859957641599550915995631959960301599603370.445000.000240.01702includedK562EFTUD2
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.252000.000000.00000excludedK562EFTUD2
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.235000.000120.00385excludedK562U2AF1
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.243000.000000.00115excludedK562HNRNPM
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.345000.000010.00222excludedK562HNRNPUL1
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.269000.000010.00027excludedK562U2AF2
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.250000.000000.00013excludedK562TARDBP
SEBNIP2ENSG00000140299.7chr15-5995754859957641599550915995631959960301599603370.225000.001440.03596includedK562RBM15
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.140000.000320.01116excludedK562RBM15
SEBNIP2ENSG00000140299.7chr15-5995754859957641599550915995631959960301599603370.200000.002140.07184includedK562SF3B1
SEBNIP2ENSG00000140299.7chr15-599603015996033759955577599563195996109059961148-0.272000.000000.00000excludedK562SF3B1
SEBNIP2ENSG00000140299.7chr15-5997094659971033599701095997028659971790599719670.064000.000120.04777includedHepG2XRN2
SEBNIP2ENSG00000140299.7chr15-5995754859957641599550915995631959960301599603370.287000.000200.00497includedK562HNRNPC
A3SSBNIP2ENSG00000140299.7chr15-5997243959972571599724395997250759974606599747820.086000.000000.00000longerK562AQR
A3SSBNIP2ENSG00000140299.7chr15-5997179059972017599717905997196759972439599725710.055000.000070.00062longerK562AQR
A3SSBNIP2ENSG00000140299.7chr15-5996338159963609599633815996351359964835599649810.128000.000000.00000longerK562AQR
A3SSBNIP2ENSG00000140299.7chr15-5996483559965003599648355996493859970109599702860.057000.000000.00004longerK562AQR
MXEBNIP2ENSG00000140299.7chr15-5996147459961561599633815996351359961090599611895996483559964938-0.165000.003440.042362includedK562DROSHA
MXEBNIP2ENSG00000140299.7chr15-59961474599615615996338159963550599610905996118959964835599649380.055000.000030.000371includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-59961474599615615996338159963609599610905996118959964835599649380.055000.000030.000371includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-59961474599615615996338159963574599610905996118959964835599649380.063000.000000.000061includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-59961474599615615996338159963539599610905996118959964835599649380.105000.000000.000001includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-59961474599615615996338159963560599610905996118959964835599649380.057000.000020.000241includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-59961474599615615996338159963565599610905996118959964835599649380.053000.000040.000571includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-5996109059961189599614745996156159951344599563195996338159963513-0.109000.010510.065892includedK562AQR
MXEBNIP2ENSG00000140299.7chr15-5997243959972507599746065997471359971790599719675998133359981479-0.159000.000150.014972includedK562UTP18
MXEBNIP2ENSG00000140299.7chr15-5996147459961561599633815996351359961090599611895996483559964938-0.158000.006700.074832includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BNIP2 is not avaliable on ENCORE database.