ATE1

General Information

Gene Name : ATE1
Gene ID : ENSG00000107669.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATE1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATE1	ENSG00000107669.17	9.84	9.48	9.66	ENCSR000AEF
HepG2	ATE1	ENSG00000107669.17	19.63	24.56	22.09	ENCSR985KAT
K562	ATE1	ENSG00000107669.17	5.75	5.92	5.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATE1 is not avaliable on ENCORE database.

Proteins bound to RNA

ATE1 RNA is bound by 16 proteins.

CanvasJS.com

eCLIP assay for ATE1 is not avaliable on ENCORE database.

16 proteins are bound to ATE1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	123500243	123500313	-	3'-UTR,intron-Distal	5.71908	21.51323	HepG2	FUBP3
chr10	123670409	123670537	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.81820	18.97241	HepG2	BCLAF1
chr10	123623159	123623285	-	intron-Distal	6.48878	13.49496	HepG2	DKC1
chr10	123681862	123681928	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.74968	10.41365	HepG2	PPIG
chr10	123681902	123681918	-	5'-UTR,CDS,intron-Distal	4.67029	10.13662	HepG2	BCLAF1
chr10	123670585	123670668	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.61553	9.83905	HepG2	BCLAF1
chr10	123683779	123683829	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.35250	8.50351	HepG2	BCLAF1
chr10	123681862	123681902	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.49743	8.16183	HepG2	BCLAF1
chr10	123681918	123681926	-	5'-UTR,CDS,intron-Distal	4.43056	7.82199	HepG2	BCLAF1
chr10	123683780	123683833	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.03178	7.60977	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 40 entries

eCLIP assay for ATE1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATE1 is not available on ENCORE database.
69 RBPs can affect the levels of ATE1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATE1 is not available on ENCORE database.

69 RBPs can affect the gene expression of ATE1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATE1	ENSG00000107669.13	524.37600	1277.32690	-1.28450	49.22690	46.71390	HepG2	ILF2
ATE1	ENSG00000107669.13	409.36830	1131.72190	-1.46700	30.58750	28.86930	HepG2	HNRNPA1
ATE1	ENSG00000107669.13	596.28860	1250.47720	-1.06840	30.31130	28.49030	HepG2	HNRNPU
ATE1	ENSG00000107669.13	542.39700	1215.20070	-1.16380	26.58340	25.32910	HepG2	TIAL1
ATE1	ENSG00000107669.13	625.98820	1159.78460	-0.88960	23.38780	21.87830	HepG2	CKAP4
ATE1	ENSG00000107669.13	1133.97610	1904.58280	-0.74810	18.57870	17.41930	HepG2	NELFE
ATE1	ENSG00000107669.13	601.04880	1258.79710	-1.06650	18.22740	16.61440	HepG2	HNRNPC
ATE1	ENSG00000107669.13	711.24970	1225.92580	-0.78540	17.65960	16.39690	HepG2	TRIM56
ATE1	ENSG00000107669.13	720.10120	1682.55580	-1.22440	16.94320	14.92290	HepG2	LARP4
ATE1	ENSG00000107669.13	1081.48510	1713.69970	-0.66410	15.62130	14.60670	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 74 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATE1 is not available on ENCORE database.

7 RBPs can affect the splicing of ATE1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATE1	ENSG00000107669.13	chr10	-	123685937	123686042			123683780	123683844	123687358	123687536	0.29900	0.00000	0.00001	included	HepG2	U2AF1
MXE	ATE1	ENSG00000107669.13	chr10	-	123658355	123658484	123659380	123659509	123629520	123629553	123661905	123662135	-0.49500	0.00000	0.00029	2included	K562	FXR1
MXE	ATE1	ENSG00000107669.13	chr10	-	123658355	123658484	123659380	123659509	123629520	123629553	123661905	123662135	-0.47200	0.00001	0.00085	2included	K562	PTBP1
MXE	ATE1	ENSG00000107669.13	chr10	-	123658355	123658484	123659380	123659509	123629520	123629553	123661905	123662135	0.26100	0.00011	0.00332	1included	HepG2	U2AF1
MXE	ATE1	ENSG00000107669.13	chr10	-	123673304	123673408	123681863	123681926	123670420	123670666	123683780	123683844	0.13400	0.00074	0.00634	1included	HepG2	U2AF2
MXE	ATE1	ENSG00000107669.13	chr10	-	123658355	123658484	123659380	123659509	123629520	123629553	123661905	123662135	0.30300	0.00090	0.00742	1included	HepG2	U2AF2
MXE	ATE1	ENSG00000107669.13	chr10	-	123673304	123673408	123681863	123681926	123670420	123670666	123683780	123683844	0.19600	0.00147	0.02367	1included	K562	DROSHA
SE	ATE1	ENSG00000107669.13	chr10	-	123658355	123658484			123629520	123629553	123661905	123662135	-0.15900	0.00290	0.02975	excluded	K562	AQR
MXE	ATE1	ENSG00000107669.13	chr10	-	123661905	123662135	123670420	123670666	123658355	123658484	123673304	123673408	0.17600	0.00616	0.08336	1included	HepG2	U2AF1
MXE	ATE1	ENSG00000107669.13	chr10	-	123673304	123673408	123681863	123681926	123670420	123670666	123683780	123683844	0.11800	0.00677	0.07748	1included	HepG2	HNRNPUL1

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATE1

General Information

Functions

Localization

Domains (AlphaFold: ATE1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATE1 is not avaliable on ENCORE database.

16 proteins are bound to ATE1 RNA:

eCLIP assay for ATE1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATE1 is not available on ENCORE database.

69 RBPs can affect the gene expression of ATE1 :

The Knockdown/knockout RNA-Seq assay for ATE1 is not available on ENCORE database.

7 RBPs can affect the splicing of ATE1 :

The Knockdown/knockout RNA-Seq assay for ATE1 is not avaliable on ENCORE database.