YIPF6

General Information

Gene Name       : YIPF6
Gene ID             : ENSG00000181704.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: YIPF6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YIPF6ENSG00000181704.115.334.504.92ENCSR000AEF
HepG2YIPF6ENSG00000181704.118.4617.0712.77ENCSR985KAT
K562YIPF6ENSG00000181704.1111.269.6010.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for YIPF6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • YIPF6 RNA is bound by 20 proteins.  







eCLIP assay for YIPF6 is not avaliable on ENCORE database.





20 proteins are bound to YIPF6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX6775180167751886+3'-UTR,CDS3.104607.30556K562YBX3
chrX6775206367752114+3'-UTR3.806603.02250K562YBX3
chrX6775517067755212+3'-UTR4.341364.85866HepG2QKI
chrX6775388867753920+3'-UTR3.428523.80864K562FAM120A
chrX6771888867718994+5'-UTR,CDS,intron-Proximal3.969756.12756HepG2NCBP2
chrX6773170167731820+CDS,intron-Distal,intron-Proximal3.236685.30095HepG2PPIG
chrX6774117367741250+CDS,intron-Proximal4.240683.56076K562BUD13
chrX6773179567731820+CDS,intron-Distal,intron-Proximal3.056563.46769K562YBX3
chrX6774260567742668+CDS3.098513.14203K562LIN28B
chrX6773323567733325+CDS,intron-Proximal3.758334.83721K562EFTUD2
chrX6773167267731737+CDS,intron-Distal,intron-Proximal3.116374.05586HepG2U2AF2
chrX6773321667733347+CDS,intron-Proximal3.457838.66286K562BUD13
chrX6773168967731820+CDS,intron-Distal,intron-Proximal3.6608711.60048K562ZNF622
chrX6773323767733302+CDS,intron-Proximal3.138504.83230K562AQR
chrX6774260067742658+CDS,intron-Proximal3.261134.57751HepG2U2AF2
chrX6774260167742760+CDS,intron-Proximal3.837334.15748K562SND1
chrX6773858667738660+CDS,intron-Proximal3.569189.31721K562BUD13
chrX6774115867741245+CDS,intron-Proximal4.861684.40745K562SF3B4
chrX6774756167747612+intron-Distal4.664774.48560K562EXOSC5
chrX6774757567747628+intron-Distal4.053453.53404K562HNRNPM
chrX6774778867747840+intron-Distal4.696275.12361K562EXOSC5
chrX6774765467747732+intron-Distal3.123653.46325HepG2SUGP2
chrX6772868267728767+intron-Distal4.196983.96879HepG2MATR3
chrX6772869867728850+intron-Distal4.301124.38558HepG2HNRNPM
chrX6771903267719104+intron-Distal,intron-Proximal4.849065.28062HepG2XPO5
chrX6774903367749073+intron-Distal4.524603.91475K562PTBP1
chrX6775157167751672+intron-Distal,intron-Proximal4.197404.07352K562KHSRP
chrX6774765467747746+intron-Distal5.7031812.99096K562EXOSC5
chrX6774714267747172+intron-Distal4.465794.80399K562EXOSC5
chrX6774559767745653+intron-Distal4.302838.21369K562EXOSC5
chrX6774901267749081+intron-Distal4.385063.45817K562MATR3
chrX6774721267747261+intron-Distal3.022843.10640HepG2SUGP2
chrX6774722467747257+intron-Distal3.903793.01456K562EXOSC5
chrX6774631467746372+intron-Distal4.348554.80399K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YIPF6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YIPF6 is not available on ENCORE database.

  • 84 RBPs can affect the levels of YIPF6.  








The Knockdown/knockout RNA-Seq assay for YIPF6 is not available on ENCORE database.





84 RBPs can affect the gene expression of YIPF6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YIPF6ENSG00000181704.71146.788401318.98680-0.201801.911901.38930HepG2ACO1
YIPF6ENSG00000181704.72098.584102664.71800-0.344602.189601.71020HepG2AKAP1
YIPF6ENSG00000181704.7800.847402204.87360-1.4611032.0152029.81060HepG2ASCC1
YIPF6ENSG00000181704.72232.970901873.925100.252802.989002.27960HepG2AUH
YIPF6ENSG00000181704.71388.93310991.138400.486704.149903.06870HepG2BCLAF1
YIPF6ENSG00000181704.71354.983502094.76770-0.628507.228406.02270HepG2CIRBP
YIPF6ENSG00000181704.71020.812901318.69450-0.369405.511504.63260HepG2CKAP4
YIPF6ENSG00000181704.7478.53350704.62630-0.558204.201502.90670HepG2CSTF2
YIPF6ENSG00000181704.71389.723901686.20620-0.279003.063402.28950HepG2DAZAP1
YIPF6ENSG00000181704.7945.797701219.87120-0.367105.228304.13010HepG2DDX19B
YIPF6ENSG00000181704.7777.627001094.98960-0.493804.741303.87950HepG2DDX21
YIPF6ENSG00000181704.71726.540002192.59620-0.344802.187101.63160HepG2DDX6
YIPF6ENSG00000181704.7764.223801033.91920-0.436104.245702.94150HepG2EIF3G
YIPF6ENSG00000181704.72045.161801593.353000.360002.782901.96580HepG2EIF4G2
YIPF6ENSG00000181704.72555.839202151.503100.248403.195102.55650HepG2ETF1
YIPF6ENSG00000181704.71225.86410933.426200.393102.846401.55960HepG2FKBP4
YIPF6ENSG00000181704.72799.336801196.726301.225904.610203.30700HepG2FTO
YIPF6ENSG00000181704.71331.937602350.25910-0.8193011.6128010.29210HepG2FXR1
YIPF6ENSG00000181704.71512.504002180.37650-0.527604.774803.91160HepG2G3BP1
YIPF6ENSG00000181704.71468.101202314.53150-0.656807.980806.44950HepG2G3BP2
YIPF6ENSG00000181704.7880.433201580.35700-0.844007.415005.61230HepG2GRSF1
YIPF6ENSG00000181704.7643.055401112.38930-0.7906010.760909.61270HepG2HNRNPA1
YIPF6ENSG00000181704.71640.941302207.43990-0.427904.101803.26570HepG2HNRNPK
YIPF6ENSG00000181704.72369.832601292.691100.874306.637405.70850HepG2HNRNPLL
YIPF6ENSG00000181704.7715.10560984.29370-0.460904.201603.05250HepG2HNRNPM
YIPF6ENSG00000181704.71203.437201615.62990-0.424902.603401.41470HepG2HSPD1
YIPF6ENSG00000181704.7834.292201090.82350-0.386803.655302.83280HepG2IGF2BP1
YIPF6ENSG00000181704.71704.470602216.36440-0.378903.021502.32090HepG2IGF2BP2
YIPF6ENSG00000181704.71511.938202351.07820-0.636907.096206.06140HepG2MAGOH
YIPF6ENSG00000181704.71801.443402364.28840-0.392302.788502.15530HepG2MATR3
YIPF6ENSG00000181704.71817.375102420.02250-0.413203.256402.57100HepG2NCBP2
YIPF6ENSG00000181704.7842.384901096.29330-0.380104.078903.20180HepG2PPIL4
YIPF6ENSG00000181704.71707.150602090.45140-0.292203.906303.28130HepG2PTBP1
YIPF6ENSG00000181704.71047.335401596.00060-0.607708.517107.54740HepG2PUF60
YIPF6ENSG00000181704.71691.365002054.73980-0.280802.461801.82200HepG2RBM25
YIPF6ENSG00000181704.7925.596501462.21230-0.659703.830302.64880HepG2RBM27
YIPF6ENSG00000181704.71385.110102326.47520-0.7481020.8263019.61200HepG2NELFE
YIPF6ENSG00000181704.71227.698402166.78900-0.8196024.4295022.91290HepG2RECQL
YIPF6ENSG00000181704.71193.582701714.42280-0.522403.583902.67240HepG2RPS3A
YIPF6ENSG00000181704.71130.608601625.47330-0.523803.557702.78970HepG2SF3A3
YIPF6ENSG00000181704.71984.354201279.609900.632904.283203.42300HepG2SF3B1
YIPF6ENSG00000181704.71700.016802176.43740-0.356405.598204.80730HepG2SF3B4
YIPF6ENSG00000181704.71024.201601276.50840-0.317704.412803.63410HepG2SMN1
YIPF6ENSG00000181704.72109.124701848.167600.190402.038601.55040HepG2SRSF9
YIPF6ENSG00000181704.71347.506801763.46280-0.388106.190705.48000HepG2SSB
YIPF6ENSG00000181704.7893.443701792.10380-1.0042022.2774020.78650HepG2SUCLG1
YIPF6ENSG00000181704.71854.796401116.374700.732308.485007.40610HepG2SUPV3L1
YIPF6ENSG00000181704.71321.452902041.90750-0.6278012.6759011.60660HepG2TAF15
YIPF6ENSG00000181704.71996.617501259.509600.664604.437203.54590HepG2TARDBP
YIPF6ENSG00000181704.71024.34930748.303600.452903.274802.19410HepG2TFIP11
YIPF6ENSG00000181704.7663.958701220.34360-0.8781011.5649010.25200HepG2U2AF1
YIPF6ENSG00000181704.71247.429101481.71460-0.248302.429601.43660HepG2UTP18
YIPF6ENSG00000181704.7925.700401391.75690-0.5883010.743709.68700HepG2UTP3
YIPF6ENSG00000181704.7667.826801098.94660-0.718606.677905.56730HepG2XRN2
YIPF6ENSG00000181704.7344.79400905.77580-1.3934039.7341037.79380HepG2ZC3H8
YIPF6ENSG00000181704.71933.830901585.425300.286504.648603.98660HepG2ZNF622
YIPF6ENSG00000181704.72097.891401829.743600.197202.213201.69620K562AGGF1
YIPF6ENSG00000181704.72357.412101903.950100.308102.829902.16870K562AKAP8L
YIPF6ENSG00000181704.72251.674201804.584900.319202.638402.06200K562AQR
YIPF6ENSG00000181704.72315.266101997.737700.212702.179101.37630K562ATP5C1
YIPF6ENSG00000181704.71441.933001043.946300.465904.030002.97500K562BOP1
YIPF6ENSG00000181704.7711.495301110.03350-0.641708.065506.70950K562CPSF6
YIPF6ENSG00000181704.7591.73590755.25910-0.352002.558101.54800K562CSTF2
YIPF6ENSG00000181704.73337.999702474.456000.431804.718203.43430K562CELF1
YIPF6ENSG00000181704.7862.811201103.86590-0.355403.460902.57640K562EIF3G
YIPF6ENSG00000181704.71361.78390957.248800.508404.333203.16460K562FTO
YIPF6ENSG00000181704.71231.97970975.899400.336102.896901.52090K562FUS
YIPF6ENSG00000181704.7940.316701487.18490-0.661405.808704.97960K562FXR1
YIPF6ENSG00000181704.72201.608301550.685900.505603.631202.79580K562G3BP2
YIPF6ENSG00000181704.71297.552601069.786300.278402.544701.45390K562GLRX3
YIPF6ENSG00000181704.71052.654201405.52290-0.417104.107703.18950K562GRSF1
YIPF6ENSG00000181704.72514.717401627.775300.627402.791901.56600K562HNRNPA2B1
YIPF6ENSG00000181704.71043.23730855.479900.286202.009101.48920K562HNRNPC
YIPF6ENSG00000181704.7593.53870865.30070-0.543903.980502.85010K562HNRNPM
YIPF6ENSG00000181704.71163.734901426.28890-0.293502.097701.40180K562HSPD1
YIPF6ENSG00000181704.72676.466602020.500600.405504.602303.49420K562KIF1C
YIPF6ENSG00000181704.71286.159701651.59060-0.360803.458902.51300K562MAGOH
YIPF6ENSG00000181704.7825.664901034.50010-0.325302.470501.64730K562METAP2
YIPF6ENSG00000181704.72676.007102144.525000.319302.423201.36920K562MSI2
YIPF6ENSG00000181704.72104.134001586.541600.407202.653601.79260K562NAA15
YIPF6ENSG00000181704.72151.330301614.224300.414305.034603.15260K562PCBP1
YIPF6ENSG00000181704.7889.251901604.59190-0.8515016.3800014.83120K562PTBP1
YIPF6ENSG00000181704.72321.597001839.742900.335504.379903.65190K562RBM15
YIPF6ENSG00000181704.71215.793601538.84450-0.339902.744201.90770K562RBM22
YIPF6ENSG00000181704.7953.900301396.18720-0.549604.957103.56660K562RPS3
YIPF6ENSG00000181704.72102.052901302.240600.690702.730201.54050K562SF1
YIPF6ENSG00000181704.71347.787301007.874700.419202.858101.86740K562SF3B1
YIPF6ENSG00000181704.71466.239001263.364200.214702.281201.42260K562SRPK2
YIPF6ENSG00000181704.7964.852001347.87550-0.482305.160203.64520K562SRSF4
YIPF6ENSG00000181704.71401.869601138.649500.299902.963201.63220K562SSB
YIPF6ENSG00000181704.71780.393901380.290000.367103.022701.59230K562SSRP1
YIPF6ENSG00000181704.71905.732301262.445800.594006.287504.32610K562STAU1
YIPF6ENSG00000181704.71037.93660772.786600.425502.985101.92750K562SUPV3L1
YIPF6ENSG00000181704.7671.63690854.50100-0.347402.735301.92100K562SYNCRIP
YIPF6ENSG00000181704.71243.634401592.06860-0.356302.753602.04750K562TARDBP
YIPF6ENSG00000181704.71989.858601552.111000.358303.993703.03070K562U2AF2
YIPF6ENSG00000181704.72788.015202138.800400.382303.851302.31870K562WRN
YIPF6ENSG00000181704.72817.018701759.993100.678503.048101.36790K562YTHDC2
YIPF6ENSG00000181704.72552.583502032.580500.328502.857701.97840K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YIPF6 is not available on ENCORE database.





2 RBPs can affect the splicing of YIPF6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYIPF6ENSG00000181704.7chrX+6773169067731819677181646771896567733168677332470.199000.001440.01921includedHepG2U2AF2
SEYIPF6ENSG00000181704.7chrX+6773169067731819677181646771896567733168677332470.224000.000130.06728includedHepG2FAM120A

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YIPF6 is not avaliable on ENCORE database.