UVSSA

General Information

Gene Name       : UVSSA
Gene ID             : ENSG00000163945.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UVSSA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UVSSAENSG00000163945.161.692.472.08ENCSR000AEF
HepG2UVSSAENSG00000163945.168.604.146.37ENCSR985KAT
K562UVSSAENSG00000163945.163.382.252.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UVSSA is not avaliable on ENCORE database.



Proteins bound to RNA
  • UVSSA RNA is bound by 39 proteins.  







eCLIP assay for UVSSA is not avaliable on ENCORE database.





39 proteins are bound to UVSSA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr413806851380736+3'-UTR4.043724.04854HepG2HNRNPC
chr413778711377931+3'-UTR,intron-Distal3.716973.06347K562NONO
chr413776041377716+3'-UTR,CDS4.322958.40228HepG2PPIG
chr413775631377604+3'-UTR,CDS4.173683.49905HepG2PPIG
chr413775811377648+3'-UTR,CDS3.549098.16617HepG2PRPF8
chr413775781377679+3'-UTR,CDS3.119915.11643K562ZNF622
chr413778631377955+3'-UTR,intron-Distal4.234654.21433K562PRPF8
chr413795751379691+3'-UTR,CDS,intron-Proximal3.811919.56000K562SF3B4
chr413778681377930+3'-UTR,intron-Distal3.707416.62272HepG2EFTUD2
chr413410691341107+5'-UTR3.335285.17507HepG2NKRF
chr413601341360215+5'-UTR,CDS3.380804.80471K562GRWD1
chr413600691360139+5'-UTR,CDS,intron-Proximal3.143763.32027K562SMNDC1
chr413690961369169+5'-UTR,CDS,intron-Proximal3.786017.21382HepG2SF3B4
chr413744251374547+5'-UTR,CDS,intron-Distal,intron-Proximal3.320226.41344HepG2PRPF8
chr413411051341165+5'-UTR5.361488.80803K562XRN2
chr413601061360216+5'-UTR,CDS,intron-Proximal3.028958.98347HepG2PPIG
chr413601051360134+5'-UTR,CDS,intron-Proximal3.788593.45225K562GRWD1
chr413411001341163+5'-UTR4.9679111.74875HepG2XRN2
chr413600581360112+5'-UTR,CDS,intron-Proximal3.219145.78448HepG2SF3B4
chr413411071341160+5'-UTR3.9831410.94397HepG2NKRF
chr413601401360218+5'-UTR,CDS3.043145.24980HepG2GRWD1
chr413601181360208+5'-UTR,CDS3.563715.77413K562DDX24
chr413746101374669+5'-UTR,CDS,intron-Proximal3.976687.33504K562SF3B4
chr413601071360223+5'-UTR,CDS,intron-Proximal5.9802715.14352K562UCHL5
chr413410591341109+5'-UTR3.880935.82539HepG2NCBP2
chr413411111341168+5'-UTR3.342624.27210HepG2NCBP2
chr413418761341941+5'-UTR,CDS,intron-Proximal3.992563.62765K562SRSF1
chr413690991369164+5'-UTR,CDS,intron-Proximal5.561647.81477K562SF3B4
chr413484961348561+CDS,intron-Proximal4.5972510.22646K562BUD13
chr413467631346843+CDS,intron-Proximal3.401114.63311K562AQR
chr413489921349033+CDS3.406354.27261HepG2GRWD1
chr413469391347030+CDS3.485224.55250HepG2GRWD1
chr413485021348555+CDS,intron-Proximal3.559013.46826K562U2AF1
chr413468291346876+CDS3.630085.58683HepG2GRWD1
chr413434521343516+CDS3.169326.30979K562RBM15
chr413455981345674+CDS,intron-Proximal4.3614210.26986HepG2PRPF8
chr413485111348561+CDS,intron-Proximal4.469376.02529K562U2AF2
chr413434501343513+CDS4.260668.89093HepG2GRWD1
chr413418861341980+CDS,intron-Proximal4.180194.83285K562GRWD1
chr413433881343491+CDS3.192753.17635HepG2PPIG
chr413418811341974+CDS3.649366.65904HepG2GRWD1
chr413489131349035+CDS,intron-Proximal3.122755.21580K562GRWD1
chr413489041348933+CDS,intron-Proximal3.474703.59112HepG2PPIG
chr413471051347219+CDS,intron-Proximal5.094216.85535K562SRSF1
chr413468761346939+CDS3.488697.33264HepG2GRWD1
chr413435801343625+CDS3.171313.34231K562RBM15
chr413484631348537+CDS,intron-Proximal5.633849.95947K562SF3B4
chr413455811345628+CDS,intron-Proximal3.673684.77136HepG2PPIG
chr413456211345630+CDS,intron-Proximal5.486076.75320K562AQR
chr413455811345628+CDS,intron-Proximal3.652885.03335K562UCHL5
chr413485961348635+CDS3.485233.05161HepG2PPIG
chr413489971349037+CDS,intron-Proximal4.882006.16445HepG2PPIG
chr413489491349040+CDS,intron-Proximal3.409846.32494K562UCHL5
chr413698791369935+CDS4.744184.97342HepG2PPIG
chr413739921374083+CDS,intron-Proximal6.2760718.73373HepG2PRPF8
chr413435651343619+CDS4.170813.87995K562UCHL5
chr413489691349032+CDS3.909625.08507K562ZNF622
chr413433081343360+CDS,intron-Proximal4.434834.16170K562UCHL5
chr413433091343400+CDS,intron-Proximal3.353768.80587HepG2GRWD1
chr413739031374001+CDS4.124048.48059HepG2GRWD1
chr413470611347204+CDS,intron-Proximal3.395775.87166HepG2GRWD1
chr413697661369851+CDS,intron-Proximal3.673494.57435K562SF3B4
chr413723731372447+intron-Distal4.068763.86024K562EWSR1
chr413482631348331+intron-Distal3.514717.63581K562CSTF2T
chr413475161347558+intron-Distal3.136633.69530HepG2CSTF2T
chr413481851348243+intron-Distal4.370768.55862K562DDX24
chr413427501342907+intron-Distal3.675776.05475K562EIF4G2
chr413474881347597+intron-Distal3.801015.84546K562RBFOX2
chr413423071342364+intron-Distal3.216165.13070HepG2HNRNPM
chr413427401342924+intron-Distal3.705757.80534HepG2RBFOX2
chr413439021343966+intron-Distal3.059404.56061K562BUD13
chr413649731365047+intron-Distal4.272216.82317K562EIF4G2
chr413440091344065+intron-Distal4.024574.43741HepG2HNRNPC
chr413648981365006+intron-Distal4.889616.23114K562TARDBP
chr413481441348250+intron-Distal3.783149.43339K562EFTUD2
chr413473461347392+intron-Distal3.758334.83721K562EFTUD2
chr413474751347554+intron-Distal3.842976.09610K562EWSR1
chr413481821348285+intron-Distal3.7929513.30483HepG2PRPF4
chr413534071353483+intron-Distal4.567194.48497K562NONO
chr413740341374141+intron-Distal,intron-Proximal3.736504.93376K562PRPF8
chr413473461347394+intron-Distal3.317496.59650HepG2RBM22
chr413474891347551+intron-Distal3.222405.08268HepG2RBFOX2
chr413425941342691+intron-Distal4.712135.72853HepG2HNRNPM
chr413510501351154+intron-Distal3.568763.15535K562EWSR1
chr413472731347318+intron-Distal,intron-Proximal3.238113.71649HepG2EFTUD2
chr413428301342909+intron-Distal5.5326810.45549K562ZRANB2
chr413437841343872+intron-Distal3.592494.63569HepG2RBFOX2
chr413483891348435+intron-Distal,intron-Proximal4.098093.02324K562XRN2
chr413481891348268+intron-Distal4.352107.16955K562UCHL5
chr413604111360468+intron-Distal3.978753.30664K562NONO
chr413481311348321+intron-Distal3.702155.49201K562EWSR1
chr413604171360477+intron-Distal3.268794.80096K562TIA1
chr413482681348329+intron-Distal3.476535.76403K562UCHL5
chr413530271353088+intron-Distal4.331384.23759K562NONO
chr413496061349699+intron-Distal4.319134.73315K562TIA1
chr413481831348314+intron-Distal3.223798.85328HepG2PRPF8
chr413481871348303+intron-Distal3.811914.95666HepG2RBM5
chr413503821350442+intron-Distal4.089493.02711K562EWSR1
chr413481821348291+intron-Distal4.876574.86913K562XRN2
chr413709171371006+intron-Distal3.218624.90123HepG2CSTF2T
chr413740311374226+intron-Distal,intron-Proximal4.297799.08780K562RBFOX2
chr413640511364119+intron-Distal5.475928.04355K562EIF4G2
chr413496421349703+intron-Distal4.518993.86024K562EWSR1
chr413495971349651+intron-Distal3.327043.96999HepG2CSTF2T
chr413482431348304+intron-Distal4.220988.55862K562DDX24
chr413675321367633+intron-Distal3.252593.31456K562TIA1
chr413740561374140+intron-Distal,intron-Proximal3.693014.76274K562UCHL5
chr413481611348272+intron-Distal3.549285.18622HepG2FASTKD2
chr413483751348454+intron-Distal,intron-Proximal4.0412513.28761K562SF3B4
chr413481911348314+intron-Distal3.9771710.49522K562RBFOX2
chr413428201342895+intron-Distal4.047056.92280HepG2HNRNPM
chr413640441364128+intron-Distal3.543673.44195K562TARDBP
chr413481921348320+intron-Distal4.602674.32196HepG2PCBP2
chr413481321348184+intron-Distal3.061457.45010K562BUD13
chr413719551372028+intron-Distal4.221594.68055HepG2CSTF2T
chr413474731347537+intron-Distal3.059683.09537K562PRPF8
chr413501111350179+intron-Distal4.400244.70436K562EWSR1
chr413483801348434+intron-Distal,intron-Proximal3.464333.54212HepG2RBM5
chr413723681372421+intron-Distal4.512103.25012HepG2FKBP4
chr413481211348263+intron-Distal5.4179711.07312HepG2GTF2F1
chr413482521348313+intron-Distal3.282064.07684K562DROSHA
chr413428291342907+intron-Distal5.5960010.53056K562HNRNPM
chr413483741348438+intron-Distal,intron-Proximal3.255704.74790K562RBFOX2
chr413438811343962+intron-Distal3.043724.49985K562RBFOX2
chr413425911342679+intron-Distal4.475035.04680K562HNRNPM
chr413481841348314+intron-Distal3.3644616.98322K562BUD13
chr413483801348441+intron-Distal,intron-Proximal3.7259611.60055K562BUD13
chr413629331363000+intron-Distal3.760603.16310HepG2CSTF2T
chr413652511365336+intron-Distal4.244004.14056K562EWSR1
chr413496511349696+intron-Distal3.158833.49516HepG2CSTF2T
chr413427521342883+intron-Distal3.490815.29774K562EXOSC5
chr413481751348263+intron-Distal3.5759510.19477K562CSTF2T
chr413481101348182+intron-Distal4.019416.65823HepG2PRPF4
chr413427671342829+intron-Distal4.066696.01105K562HNRNPM
chr413719751372059+intron-Distal3.400906.04314HepG2FKBP4
chr413478141347891+intron-Distal3.430983.67092K562PRPF8
chr413427691342830+intron-Distal6.153425.74423K562ZRANB2
chr413481421348185+intron-Distal3.936333.25414K562RBFOX2
chr413490901349147+intron-Distal,intron-Proximal3.105933.48399HepG2CSTF2T
chr413481231348277+intron-Distal5.428658.83340K562GTF2F1
chr413709271371000+intron-Distal5.226945.93132HepG2FKBP4
chr413495991349703+intron-Distal3.372773.84340K562CSTF2T
chr413474831347559+intron-Distal3.342874.13948HepG2PRPF4
chr413740421374131+intron-Distal,intron-Proximal5.159486.91748K562SF3B4
chr413653991365479+intron-Distal4.222464.70168K562CSTF2T
chr413660091366063+intron-Distal4.163704.37414K562RBFOX2
chr413531221353190+intron-Distal4.438445.42636K562NONO
chr413483801348443+intron-Distal,intron-Proximal3.572037.94631HepG2SF3B4
chr413712331371291+intron-Distal4.008415.17126HepG2FKBP4
chr413481571348307+intron-Distal3.494325.98857K562FUS
chr413428201342946+intron-Distal3.603995.14244K562DROSHA
chr413481231348249+intron-Distal3.2617513.18025K562AKAP8L
chr413746151374664+intron-Proximal4.176233.74254HepG2SF3B4
chr413740221374112+intron-Proximal4.7818412.28583HepG2EFTUD2
chr413456441345669+intron-Proximal4.114676.32052K562AQR
chr413472191347278+intron-Proximal4.0485114.21892HepG2RBM22
chr413602511360313+intron-Proximal4.377093.86024K562EWSR1
chr413436631343715+intron-Proximal3.158143.61689K562RBFOX2
chr413602501360310+intron-Proximal5.533457.41664HepG2EFTUD2
chr413436611343741+intron-Proximal3.076733.92610HepG2GRWD1
chr413456551345720+intron-Proximal3.545836.79023HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UVSSA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UVSSA is not available on ENCORE database.

  • 74 RBPs can affect the levels of UVSSA.  








The Knockdown/knockout RNA-Seq assay for UVSSA is not available on ENCORE database.





74 RBPs can affect the gene expression of UVSSA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UVSSAENSG00000163945.11903.38820682.620300.404204.207703.39320HepG2AUH
UVSSAENSG00000163945.11425.51730310.551500.454302.494501.92300HepG2BOP1
UVSSAENSG00000163945.11702.42240505.963700.473202.522601.59630HepG2CCAR1
UVSSAENSG00000163945.11371.75720518.55150-0.480104.770603.71430HepG2DDX19B
UVSSAENSG00000163945.11354.02750207.836800.768304.340103.58080HepG2DDX6
UVSSAENSG00000163945.11413.00170536.41800-0.377202.767802.09050HepG2DKC1
UVSSAENSG00000163945.11374.34990266.832600.488403.759403.02110HepG2DNAJC2
UVSSAENSG00000163945.11607.42720199.810301.6040014.8401013.53560HepG2EIF2S1
UVSSAENSG00000163945.11378.66510220.819500.778004.744203.91070HepG2EIF4A3
UVSSAENSG00000163945.11538.64770214.988001.3250011.4765010.12220HepG2EIF4B
UVSSAENSG00000163945.11602.88210783.78340-0.378603.557702.88920HepG2ETF1
UVSSAENSG00000163945.11369.48750547.89440-0.568404.637303.56100HepG2EWSR1
UVSSAENSG00000163945.11389.55970166.269801.2282012.3418010.73950HepG2FUBP3
UVSSAENSG00000163945.11496.95760222.780501.1574011.4262010.11760HepG2FXR1
UVSSAENSG00000163945.11554.47400206.670601.4237016.9210015.34350HepG2G3BP1
UVSSAENSG00000163945.11384.60370219.395600.809705.526304.25350HepG2G3BP2
UVSSAENSG00000163945.11199.28920302.31450-0.601203.047202.32420HepG2HNRNPC
UVSSAENSG00000163945.11701.83100209.251701.7458028.5557026.55900HepG2HNRNPK
UVSSAENSG00000163945.11378.33930300.315700.333101.956701.43790HepG2HNRNPU
UVSSAENSG00000163945.11425.18030210.079301.017008.397407.28810HepG2IGF2BP2
UVSSAENSG00000163945.11368.61520197.137500.902802.895301.88990HepG2IGF2BP3
UVSSAENSG00000163945.11424.33380211.297901.005806.911105.24560HepG2KHSRP
UVSSAENSG00000163945.11436.80020222.858200.970707.859406.76750HepG2MAGOH
UVSSAENSG00000163945.11464.75780224.108301.052208.430807.37980HepG2MATR3
UVSSAENSG00000163945.11833.04120229.389601.8605031.0937029.15540HepG2NCBP2
UVSSAENSG00000163945.11623.12390204.296801.6088022.6934020.68110HepG2PABPC4
UVSSAENSG00000163945.11346.48860211.405500.712702.413401.83740HepG2PCBP1
UVSSAENSG00000163945.11273.39150358.18210-0.389702.275001.56600HepG2PRPF4
UVSSAENSG00000163945.11452.84580215.145601.0736013.4825012.45600HepG2PTBP1
UVSSAENSG00000163945.11500.84300354.762100.497404.813804.07650HepG2PUM1
UVSSAENSG00000163945.11629.01530354.502200.827209.749708.53030HepG2PUM2
UVSSAENSG00000163945.11466.55230571.08590-0.291702.098601.54420HepG2PUS1
UVSSAENSG00000163945.11767.70980232.938501.7205037.6591035.80620HepG2QKI
UVSSAENSG00000163945.11516.40100655.08870-0.343202.690402.17710HepG2RBM22
UVSSAENSG00000163945.11334.48690211.432900.661604.495303.65240HepG2RBM25
UVSSAENSG00000163945.11475.44040239.409300.989709.542308.64650HepG2NELFE
UVSSAENSG00000163945.11492.66060223.026401.143306.126605.25830HepG2RECQL
UVSSAENSG00000163945.11342.66740267.444300.357502.009701.44660HepG2SAFB2
UVSSAENSG00000163945.11504.71420666.43660-0.401002.226601.62050HepG2SF3A3
UVSSAENSG00000163945.11438.53060223.935900.9695011.036309.97510HepG2SF3B4
UVSSAENSG00000163945.11539.54730320.441700.751606.229405.24330HepG2SLBP
UVSSAENSG00000163945.11437.37440739.88240-0.7584012.0356011.18580HepG2SRFBP1
UVSSAENSG00000163945.11530.22710642.36480-0.276802.073501.61320HepG2SSB
UVSSAENSG00000163945.11625.08730375.263900.736109.988108.93030HepG2SUCLG1
UVSSAENSG00000163945.11372.98460210.182800.827405.915805.14740HepG2TAF15
UVSSAENSG00000163945.11455.58740193.059101.2386016.2402014.26830HepG2TIA1
UVSSAENSG00000163945.11214.62690291.81210-0.443202.295001.83100HepG2TIAL1
UVSSAENSG00000163945.11456.15190326.494600.482403.086402.15890HepG2TUFM
UVSSAENSG00000163945.11686.08450345.590700.989209.060507.51240HepG2UBE2L3
UVSSAENSG00000163945.11158.24460253.04670-0.677202.549901.58890HepG2UPF2
UVSSAENSG00000163945.11432.24640570.61370-0.400703.174402.54090HepG2UTP3
UVSSAENSG00000163945.11188.11670272.06650-0.532302.285901.62130HepG2XRN2
UVSSAENSG00000163945.11183.29130353.49700-0.947609.882508.74310HepG2ZC3H8
UVSSAENSG00000163945.11789.17770650.017000.279802.588802.05530HepG2ZNF622
UVSSAENSG00000163945.11836.639001220.38440-0.544708.168707.26400K562AGGF1
UVSSAENSG00000163945.111019.405901269.87550-0.317002.247701.65610K562AKAP8L
UVSSAENSG00000163945.11386.39790706.40160-0.870402.927502.32600K562AQR
UVSSAENSG00000163945.111104.969101458.39330-0.400404.092602.61880K562CCDC124
UVSSAENSG00000163945.11451.30370658.56530-0.545204.948104.11240K562DDX47
UVSSAENSG00000163945.111050.030101366.41320-0.380004.338303.20860K562DKC1
UVSSAENSG00000163945.11782.59250582.171700.426704.494202.93090K562EIF2S1
UVSSAENSG00000163945.11276.92790575.85480-1.0562015.2742013.96200K562FXR1
UVSSAENSG00000163945.11313.94990224.872900.481302.288901.56650K562GPKOW
UVSSAENSG00000163945.11141.99300227.70940-0.681402.916001.95680K562HNRNPM
UVSSAENSG00000163945.11687.52790535.263100.361102.823901.92110K562HNRNPU
UVSSAENSG00000163945.11656.24420489.664400.422302.265301.36350K562IGF2BP2
UVSSAENSG00000163945.11355.53000514.33580-0.532704.231803.18790K562MAGOH
UVSSAENSG00000163945.111040.821701509.67930-0.536506.358904.87170K562MBNL1
UVSSAENSG00000163945.11694.866601058.17900-0.606804.149103.00900K562NAA15
UVSSAENSG00000163945.11827.92430552.929300.582306.302804.48000K562NCBP2
UVSSAENSG00000163945.11454.92890564.18840-0.310502.118101.45580K562NSUN2
UVSSAENSG00000163945.11220.74950314.27490-0.509602.568801.78330K562PPIG
UVSSAENSG00000163945.11149.87790245.74690-0.713403.380802.54900K562PRPF8
UVSSAENSG00000163945.11789.993801259.29540-0.672706.846406.03660K562PUS1
UVSSAENSG00000163945.11824.738401227.05380-0.573207.718606.75810K562RBM15
UVSSAENSG00000163945.11143.08800251.24870-0.812203.721902.16080K562RRP9
UVSSAENSG00000163945.11714.30060570.455500.324302.895601.94180K562SRPK2
UVSSAENSG00000163945.11239.66840489.93420-1.0315011.5585010.12400K562SRSF1
UVSSAENSG00000163945.11616.04000462.784400.412602.702101.66790K562SRSF5
UVSSAENSG00000163945.11690.37800478.251000.529504.774703.65490K562TIA1
UVSSAENSG00000163945.11645.12170469.468000.458403.319402.10340K562TRA2A
UVSSAENSG00000163945.11348.81690251.810300.470002.256301.34600K562UCHL5
UVSSAENSG00000163945.11740.76590598.225400.308202.673601.96710K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UVSSA is not available on ENCORE database.





5 RBPs can affect the splicing of UVSSA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUVSSAENSG00000163945.11chr4+137442813745351373834137401813746671374776-0.087000.007000.09828excludedHepG2U2AF1
SEUVSSAENSG00000163945.11chr4+1374428137453513738341374018137466713747760.107000.004210.09258includedHepG2SF3A3
SEUVSSAENSG00000163945.11chr4+1374439137453513738341374018137466713747760.249000.000040.00256includedK562UTP18
SEUVSSAENSG00000163945.11chr4+1374439137453513738341374018137466713747760.184000.003920.07725includedK562AGGF1
A3SSUVSSAENSG00000163945.11chr4+1345481134562313455021345623134331113436420.297000.016650.08169longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UVSSA is not avaliable on ENCORE database.