TTC13

General Information

Gene Name       : TTC13
Gene ID             : ENSG00000143643.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TTC13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TTC13ENSG00000143643.1222.4220.9621.69ENCSR000AEF
HepG2TTC13ENSG00000143643.127.1311.039.08ENCSR985KAT
K562TTC13ENSG00000143643.127.549.288.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TTC13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TTC13 RNA is bound by 7 proteins.  







eCLIP assay for TTC13 is not avaliable on ENCORE database.





7 proteins are bound to TTC13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1231076262231076360-3'-UTR,CDS,intron-Distal,intron-Proximal4.863688.05832K562SF3B4
chr1231074950231075158-CDS,intron-Distal,intron-Proximal3.108355.73570K562PRPF8
chr1231075112231075134-CDS,intron-Distal,intron-Proximal5.6385010.44569K562AQR
chr1231071977231072044-CDS,intron-Distal,intron-Proximal3.642618.77060K562AQR
chr1231064682231064755-CDS,intron-Distal,intron-Proximal4.485905.10960K562ZNF622
chr1231071899231072038-CDS,intron-Distal,intron-Proximal3.454394.07440K562PRPF8
chr1231075068231075112-intron-Distal,intron-Proximal5.9653212.64691K562AQR
chr1231071465231071682-intron-Distal4.137624.18579K562MATR3
chr1231079382231079445-intron-Distal3.717885.98773K562KHSRP
chr1231078793231078922-intron-Distal3.002903.20529K562HNRNPL
chr1231075000231075068-intron-Distal,intron-Proximal3.705623.94787K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TTC13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TTC13 is not available on ENCORE database.

  • 95 RBPs can affect the levels of TTC13.  








The Knockdown/knockout RNA-Seq assay for TTC13 is not available on ENCORE database.





95 RBPs can affect the gene expression of TTC13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TTC13ENSG00000143643.81016.98320337.891501.5896023.3648021.98690HepG2AKAP1
TTC13ENSG00000143643.8500.89970387.367200.370702.711102.03170HepG2AUH
TTC13ENSG00000143643.8736.20730574.706600.357202.272801.72460HepG2BOP1
TTC13ENSG00000143643.8434.88540308.727900.494203.338801.99560HepG2BUD13
TTC13ENSG00000143643.8751.82310381.356300.9792011.8664010.45090HepG2CALR
TTC13ENSG00000143643.8172.79360286.69050-0.730403.072702.26400HepG2CNOT7
TTC13ENSG00000143643.8405.97760265.780300.611104.711703.21840HepG2DDX1
TTC13ENSG00000143643.8475.61160323.685100.555103.226602.55780HepG2DDX3X
TTC13ENSG00000143643.8565.15670368.929000.615203.174302.09860HepG2DDX5
TTC13ENSG00000143643.8336.37890238.376900.496702.506501.45070HepG2EFTUD2
TTC13ENSG00000143643.8471.39820267.299100.818406.121105.25770HepG2EIF2S1
TTC13ENSG00000143643.8450.98000295.408800.610303.591902.86560HepG2EIF4A3
TTC13ENSG00000143643.8673.32650405.373000.732009.199607.84340HepG2EIF4G1
TTC13ENSG00000143643.8489.41560328.030200.577102.947701.79630HepG2FUS
TTC13ENSG00000143643.8142.26260279.91210-0.976406.060405.05570HepG2HNRNPK
TTC13ENSG00000143643.8412.55660290.724000.504803.905003.19610HepG2HNRNPU
TTC13ENSG00000143643.8329.09250431.78840-0.391802.384301.71020HepG2IGF2BP1
TTC13ENSG00000143643.8518.41260281.037900.883207.574506.51450HepG2IGF2BP2
TTC13ENSG00000143643.8627.56540263.714801.250702.835601.84160HepG2IGF2BP3
TTC13ENSG00000143643.8459.99510298.123000.625603.924403.14430HepG2MAGOH
TTC13ENSG00000143643.8794.92500336.773401.2389019.9700018.05600HepG2MSI2
TTC13ENSG00000143643.8475.78670306.864100.632603.948103.19570HepG2NCBP2
TTC13ENSG00000143643.8616.19000273.304301.1728013.2961011.74160HepG2PABPC4
TTC13ENSG00000143643.8560.98010273.496601.0363015.1466013.91000HepG2PCBP1
TTC13ENSG00000143643.8369.48510273.796000.432302.419101.69000HepG2PRPF4
TTC13ENSG00000143643.8557.55140278.264001.0026013.1850012.16850HepG2PTBP1
TTC13ENSG00000143643.8535.26470412.885300.374402.959502.35090HepG2PUM1
TTC13ENSG00000143643.8417.85670272.280600.617805.611004.78900HepG2PUS1
TTC13ENSG00000143643.8443.09370301.428600.555703.738003.02880HepG2QKI
TTC13ENSG00000143643.8832.52120299.685601.473908.511007.31730HepG2RAVER1
TTC13ENSG00000143643.8559.08010273.542501.031209.680708.47590HepG2RBM25
TTC13ENSG00000143643.8412.13230309.705200.412102.243501.74640HepG2NELFE
TTC13ENSG00000143643.8361.37010472.38460-0.386502.137301.52700HepG2RPLP0
TTC13ENSG00000143643.8458.20890294.357400.638303.241502.22010HepG2RPS10
TTC13ENSG00000143643.8402.02770290.184800.470202.662701.87630HepG2RPS2
TTC13ENSG00000143643.8396.95730217.215000.869805.651704.56530HepG2RRP9
TTC13ENSG00000143643.82694.43910628.618102.099608.462907.09990HepG2SNRNP70
TTC13ENSG00000143643.8502.93130302.426300.733707.133406.45740HepG2SRSF1
TTC13ENSG00000143643.8539.58900384.025500.490604.158303.41930HepG2SRSF5
TTC13ENSG00000143643.8317.99230430.80910-0.438103.092502.36240HepG2SRSF7
TTC13ENSG00000143643.8540.42190364.546000.567905.951605.25400HepG2SSB
TTC13ENSG00000143643.8557.41490436.757200.351802.613902.00580HepG2SUCLG1
TTC13ENSG00000143643.8509.57620280.980500.858709.616407.95610HepG2SUPT6H
TTC13ENSG00000143643.8483.84490271.773600.832008.622107.72160HepG2TAF15
TTC13ENSG00000143643.8797.02030556.309700.518604.209003.33840HepG2TARDBP
TTC13ENSG00000143643.8348.91950249.785400.482102.698201.87180HepG2TIA1
TTC13ENSG00000143643.8534.11570285.016300.9060012.6984011.61680HepG2TRIM56
TTC13ENSG00000143643.8539.20480355.912400.599204.164803.40150HepG2U2AF1
TTC13ENSG00000143643.81136.35550566.292801.004702.820101.82090HepG2U2AF2
TTC13ENSG00000143643.8678.16300402.183100.753705.224304.05320HepG2UBE2L3
TTC13ENSG00000143643.8518.21310406.764000.349302.552301.87700HepG2UPF1
TTC13ENSG00000143643.8491.15040329.561500.575502.956701.85940HepG2XRCC6
TTC13ENSG00000143643.8424.01810270.223400.649905.227304.35270HepG2ZC3H8
TTC13ENSG00000143643.81050.53250447.366301.2315038.5662037.14000HepG2ZNF622
TTC13ENSG00000143643.8442.31550299.386800.563002.904801.57240HepG2ZRANB2
TTC13ENSG00000143643.8200.56510304.77870-0.603703.343502.02980K562AARS
TTC13ENSG00000143643.8315.96960616.90160-0.9653013.6363012.47810K562AGGF1
TTC13ENSG00000143643.8419.11060641.91630-0.615105.196204.28880K562AKAP8L
TTC13ENSG00000143643.8337.60410455.66760-0.432602.470301.90930K562AQR
TTC13ENSG00000143643.8489.88780673.52890-0.459304.019702.89980K562ATP5C1
TTC13ENSG00000143643.8433.63460656.05870-0.597302.821601.74510K562CNOT7
TTC13ENSG00000143643.8310.79360432.92220-0.478202.911002.10770K562CPSF6
TTC13ENSG00000143643.8170.65150287.23550-0.751205.129403.64990K562DDX3X
TTC13ENSG00000143643.8953.80540646.033300.562004.683103.86630K562DDX47
TTC13ENSG00000143643.8472.16020690.73390-0.548905.822904.49010K562DKC1
TTC13ENSG00000143643.8168.77950274.25620-0.700403.531102.49310K562EFTUD2
TTC13ENSG00000143643.8146.40130293.66140-1.004206.464304.78760K562EIF3D
TTC13ENSG00000143643.8242.82670320.36700-0.399802.087901.38900K562EIF3G
TTC13ENSG00000143643.8183.61090300.08040-0.708704.577403.52250K562EIF4A3
TTC13ENSG00000143643.8193.61430270.22930-0.481002.706901.57220K562EIF4B
TTC13ENSG00000143643.8195.71040312.06930-0.673104.697303.93750K562FXR1
TTC13ENSG00000143643.8239.21240402.29320-0.750006.009703.79280K562G3BP1
TTC13ENSG00000143643.8255.31050413.33090-0.695005.067503.99700K562GPKOW
TTC13ENSG00000143643.8313.36230508.02860-0.697105.500204.43210K562GRSF1
TTC13ENSG00000143643.8105.99020333.49330-1.6537017.1471015.74130K562HNRNPC
TTC13ENSG00000143643.8195.84400420.31180-1.101809.978907.57480K562HNRNPK
TTC13ENSG00000143643.890.93230309.42550-1.7667015.7769013.14630K562HNRNPM
TTC13ENSG00000143643.8251.78370420.63800-0.740404.610503.14700K562IGF2BP2
TTC13ENSG00000143643.8177.27910322.93980-0.865206.216104.02660K562LARP7
TTC13ENSG00000143643.8229.99860442.23400-0.943209.626708.00050K562MAGOH
TTC13ENSG00000143643.8458.89850652.10700-0.506903.249502.05790K562MAK16
TTC13ENSG00000143643.8285.30410441.36120-0.629505.078703.78240K562MATR3
TTC13ENSG00000143643.8567.10930771.24070-0.443603.257302.02770K562MSI2
TTC13ENSG00000143643.8334.29090534.91080-0.678203.915402.81470K562NAA15
TTC13ENSG00000143643.8217.07500501.78720-1.208906.444804.74830K562PABPN1
TTC13ENSG00000143643.8306.70040432.20690-0.494903.391501.89390K562PCBP1
TTC13ENSG00000143643.8211.71460393.50800-0.894307.221105.61240K562PCBP2
TTC13ENSG00000143643.8470.69280305.596000.623103.898502.91130K562PCBP3
TTC13ENSG00000143643.8936.36000743.478000.332702.803601.35450K562PNPT1
TTC13ENSG00000143643.8387.71090234.397100.725905.573204.43780K562POLR2G
TTC13ENSG00000143643.8306.18070427.05450-0.480002.916502.07130K562PPIG
TTC13ENSG00000143643.8154.21620266.88240-0.791304.110103.19580K562PRPF8
TTC13ENSG00000143643.8208.91080429.64610-1.0403011.7727010.45810K562PTBP1
TTC13ENSG00000143643.8483.85820789.45620-0.706307.154505.83740K562PUF60
TTC13ENSG00000143643.81045.62250839.711000.316302.464801.46200K562PUM1
TTC13ENSG00000143643.8219.91200636.58890-1.5334021.3108019.83000K562PUS1
TTC13ENSG00000143643.8263.34570389.48820-0.564604.030801.84950K562QKI
TTC13ENSG00000143643.8337.30290620.27320-0.8789010.804009.65560K562RBM15
TTC13ENSG00000143643.8216.97740412.06670-0.925308.530406.93480K562RBM22
TTC13ENSG00000143643.8376.87810271.861500.471102.152001.43630K562RPS19
TTC13ENSG00000143643.888.37380228.38560-1.369808.033605.61370K562SERBP1
TTC13ENSG00000143643.8302.90570400.19750-0.401802.284101.53750K562SF3A3
TTC13ENSG00000143643.8151.16300361.94420-1.2597014.0765012.03510K562SF3B4
TTC13ENSG00000143643.8322.95510189.379200.770005.154803.39410K562SLBP
TTC13ENSG00000143643.8214.05450421.17840-0.976509.451908.15440K562SRSF1
TTC13ENSG00000143643.8714.07550493.632800.532503.954402.31180K562SSRP1
TTC13ENSG00000143643.8157.80890258.42080-0.711503.369802.23760K562SUPV3L1
TTC13ENSG00000143643.8514.45860348.438300.562104.824903.76680K562U2AF2
TTC13ENSG00000143643.8403.78330645.45090-0.676702.548301.32770K562UTP18
TTC13ENSG00000143643.8500.17520382.644500.386303.047602.15990K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TTC13 is not available on ENCORE database.





8 RBPs can affect the splicing of TTC13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETTC13ENSG00000143643.8chr1-231081134231081200231076254231076302231090078231090149-0.278000.000720.02433excludedK562AKAP8L
SETTC13ENSG00000143643.8chr1-231081134231081200231076254231076302231090078231090149-0.517000.001300.06999excludedHepG2AKAP1
SETTC13ENSG00000143643.8chr1-2310638012310639172310612622310613932310646822310648390.133000.009900.08058includedK562AQR
SETTC13ENSG00000143643.8chr1-231081134231081200231076254231076302231090078231090149-0.251000.000330.02664excludedHepG2FTO
SETTC13ENSG00000143643.8chr1-2310811342310812002310695242310696072310900782310901490.262000.000650.07342includedHepG2HNRNPUL1
MXETTC13ENSG00000143643.8chr1-231071903231072010231075131231075242231069524231069607231076185231076302-0.304000.000020.000742includedHepG2SFPQ
MXETTC13ENSG00000143643.8chr1-231071903231072010231075131231075242231069524231069607231076185231076302-0.494000.000000.001842includedK562TBRG4
MXETTC13ENSG00000143643.8chr1-2310719032310720102310751312310752422310695242310696072310761852310763020.410000.001480.031601includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TTC13 is not avaliable on ENCORE database.