TMOD1

General Information

Gene Name       : TMOD1
Gene ID             : ENSG00000136842.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMOD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMOD1ENSG00000136842.1324.5221.3122.91ENCSR000AEF
HepG2TMOD1ENSG00000136842.130.050.210.13ENCSR985KAT
K562TMOD1ENSG00000136842.1327.8527.6927.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMOD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMOD1 RNA is bound by 28 proteins.  







eCLIP assay for TMOD1 is not avaliable on ENCORE database.





28 proteins are bound to TMOD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9100362207100362317+3'-UTR3.4383613.25597K562PABPC4
chr9100362149100362223+3'-UTR3.001727.35717HepG2SUB1
chr9100362098100362145+3'-UTR4.294444.55651HepG2SUB1
chr9100362186100362320+3'-UTR3.0334212.85266K562UPF1
chr9100308466100308526+CDS,intron-Proximal3.904459.72262K562GRWD1
chr9100353706100353717+CDS3.290024.08171K562YBX3
chr9100308553100308622+CDS4.0210311.34892K562UCHL5
chr9100286564100286590+CDS3.5195816.22459K562ZNF622
chr9100331234100331292+CDS3.165565.41108K562RBM15
chr9100328222100328237+CDS3.053534.99629K562PUM1
chr9100328199100328236+CDS4.528416.49373K562ZNF800
chr9100315563100315597+CDS5.455749.35594K562UCHL5
chr9100361920100361969+CDS3.199227.92361K562ZNF622
chr9100325102100325110+CDS,intron-Proximal3.888894.41130K562AQR
chr9100331175100331185+CDS,intron-Proximal3.506818.32162K562ZNF622
chr9100328186100328237+CDS3.6690718.78157K562ZNF622
chr9100308465100308525+CDS,intron-Proximal3.7239118.54391K562UCHL5
chr9100286585100286616+CDS,intron-Proximal4.8659810.64121K562AQR
chr9100308543100308619+CDS3.837903.39325K562SRSF1
chr9100328178100328237+CDS3.6490612.20946K562UCHL5
chr9100286484100286512+CDS3.565676.76685K562YBX3
chr9100328061100328150+CDS,intron-Proximal3.5166112.58062K562SF3B4
chr9100331175100331209+CDS,intron-Proximal3.123984.80269K562UCHL5
chr9100331291100331336+CDS,intron-Proximal3.3331215.97490K562ZNF622
chr9100326447100326542+CDS,intron-Proximal3.4329116.75694K562AQR
chr9100286498100286591+CDS,intron-Proximal3.3201222.45980K562UCHL5
chr9100308465100308523+CDS,intron-Proximal3.2902018.06418K562ZNF622
chr9100286539100286591+CDS,intron-Proximal3.177098.74036K562GRWD1
chr9100315597100315647+CDS3.205747.32216K562UCHL5
chr9100331233100331291+CDS3.5273920.82971K562ZNF622
chr9100353573100353589+CDS3.509635.83654K562ZNF622
chr9100308582100308619+CDS3.266928.48432K562ZNF622
chr9100331185100331233+CDS3.7891114.17655K562ZNF622
chr9100315562100315587+CDS,intron-Proximal3.120836.25786K562ZNF622
chr9100331175100331188+CDS,intron-Proximal3.240573.46047K562GRWD1
chr9100267854100267956+intron-Distal3.652234.51915K562MATR3
chr9100269184100269317+intron-Distal4.829996.14290K562KHDRBS1
chr9100265015100265129+intron-Distal5.6799714.84965K562NONO
chr9100299514100299601+intron-Distal5.4885611.05400K562TARDBP
chr9100264562100264640+intron-Distal3.921669.53485K562NONO
chr9100337652100337767+intron-Distal3.351884.74755K562ZNF622
chr9100326466100326553+intron-Distal,intron-Proximal4.766869.81400K562EFTUD2
chr9100264754100264885+intron-Distal3.333307.83137K562NONO
chr9100265509100265573+intron-Distal3.137623.45178K562MATR3
chr9100273127100273152+intron-Distal3.746224.90485K562AGGF1
chr9100273185100273234+intron-Distal3.975935.74048K562AGGF1
chr9100357335100357481+intron-Distal4.366075.02888K562KHSRP
chr9100331564100331628+intron-Distal4.901637.67538K562HNRNPL
chr9100270174100270244+intron-Distal3.898117.75673K562AGGF1
chr9100335965100335996+intron-Distal4.916318.26133K562RBFOX2
chr9100331747100331829+intron-Distal3.280086.87839K562HNRNPL
chr9100335915100335965+intron-Distal4.7242411.39920K562RBFOX2
chr9100334626100334726+intron-Distal3.621684.50290K562GTF2F1
chr9100268032100268146+intron-Distal4.018546.21862K562MATR3
chr9100309459100309559+intron-Distal3.693123.06617K562HNRNPK
chr9100331878100331930+intron-Distal3.227923.14650K562TIA1
chr9100299605100299700+intron-Distal5.127719.43874K562TARDBP
chr9100269861100269925+intron-Distal3.435205.12089K562HNRNPL
chr9100286815100286872+intron-Distal4.352946.72905K562EIF4G2
chr9100270295100270404+intron-Distal3.789358.60813K562HNRNPL
chr9100264532100264611+intron-Distal3.947426.05689K562GEMIN5
chr9100273389100273473+intron-Distal5.396318.84337K562HNRNPL
chr9100268359100268429+intron-Distal3.578035.22442K562MATR3
chr9100273539100273563+intron-Distal3.464924.70018K562AGGF1
chr9100264912100265015+intron-Distal5.125149.31104K562NONO
chr9100269881100269935+intron-Distal5.132516.53047K562AGGF1
chr9100273397100273492+intron-Distal4.6076214.11168K562AGGF1
chr9100273190100273253+intron-Distal3.419353.84589K562HNRNPL
chr9100264154100264306+intron-Distal,intron-Proximal3.100588.30811K562EFTUD2
chr9100264124100264224+intron-Distal,intron-Proximal3.392225.85631K562NONO
chr9100265215100265317+intron-Distal3.246583.63710K562HNRNPK
chr9100331382100331413+intron-Proximal3.864373.05875K562RBM15
chr9100331328100331392+intron-Proximal4.388116.80869K562AQR
chr9100315690100315727+intron-Proximal5.281207.79404K562PRPF8
chr9100325110100325146+intron-Proximal4.251807.30031K562AQR
chr9100286616100286636+intron-Proximal5.7642710.44569K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMOD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMOD1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of TMOD1.  








The Knockdown/knockout RNA-Seq assay for TMOD1 is not available on ENCORE database.





65 RBPs can affect the gene expression of TMOD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMOD1ENSG00000136842.937.554308.733102.104303.758202.55160HepG2AKAP8
TMOD1ENSG00000136842.934.402004.375102.975005.741804.67270HepG2AKAP8L
TMOD1ENSG00000136842.935.450309.250401.938103.413802.66630HepG2AUH
TMOD1ENSG00000136842.912.8270038.07080-1.569502.688201.40780HepG2DDX47
TMOD1ENSG00000136842.922.216904.072702.447501.975901.31100HepG2DDX55
TMOD1ENSG00000136842.937.1212010.690001.795902.860801.86610HepG2DDX59
TMOD1ENSG00000136842.938.050804.044103.233905.962905.08460HepG2DDX6
TMOD1ENSG00000136842.921.988304.027802.448602.958302.27180HepG2G3BP1
TMOD1ENSG00000136842.937.881809.495401.996102.918401.65040HepG2HSPD1
TMOD1ENSG00000136842.942.875203.836003.482405.127603.80490HepG2IGF2BP3
TMOD1ENSG00000136842.969.965809.430702.891107.701006.60670HepG2PUM2
TMOD1ENSG00000136842.954.1826011.249402.267904.765403.85440HepG2RAVER1
TMOD1ENSG00000136842.94.5154028.60070-2.663104.250302.63570HepG2SART3
TMOD1ENSG00000136842.973.6431010.026402.8767010.541509.73380HepG2SRFBP1
TMOD1ENSG00000136842.923.081003.698002.641803.798703.17400HepG2SRSF9
TMOD1ENSG00000136842.927.542707.114901.952702.869902.18790HepG2ZC3H8
TMOD1ENSG00000136842.96482.256804569.820400.504309.671207.89370K562CELF1
TMOD1ENSG00000136842.94378.522403341.189900.390008.298807.24990K562DDX47
TMOD1ENSG00000136842.92538.500103026.57770-0.253703.080302.14920K562DKC1
TMOD1ENSG00000136842.92392.410801644.523200.540704.376102.73180K562EEF2
TMOD1ENSG00000136842.92219.058801697.546900.386406.401104.53130K562EIF2S1
TMOD1ENSG00000136842.9786.397402219.17690-1.4967064.2033061.78150K562EIF2S2
TMOD1ENSG00000136842.91901.530901072.072500.826703.369702.25050K562EIF3A
TMOD1ENSG00000136842.92111.004301445.989800.545809.405607.93960K562EIF3G
TMOD1ENSG00000136842.92147.727801614.560600.411604.302303.27890K562EIF4A3
TMOD1ENSG00000136842.94767.117003716.524300.359106.644905.21030K562EIF4G2
TMOD1ENSG00000136842.93447.659902474.686300.478305.679104.43690K562FIP1L1
TMOD1ENSG00000136842.92297.652601667.295100.462604.135802.72040K562FKBP4
TMOD1ENSG00000136842.91858.247801278.367500.539508.195305.76130K562FUS
TMOD1ENSG00000136842.92700.131102222.925300.280503.285202.03860K562GLRX3
TMOD1ENSG00000136842.91632.347302207.25460-0.435305.393803.91300K562HNRNPA1
TMOD1ENSG00000136842.92445.709701919.492200.349403.606302.93620K562HNRNPC
TMOD1ENSG00000136842.92334.857703355.22100-0.523106.724105.49350K562HSPD1
TMOD1ENSG00000136842.91551.929201101.040400.495104.230502.38330K562ILF3
TMOD1ENSG00000136842.92856.951602139.103300.417405.177003.86500K562MATR3
TMOD1ENSG00000136842.92830.832503343.78180-0.240302.123501.34300K562MBNL1
TMOD1ENSG00000136842.93261.087102337.114700.4805011.9957010.44700K562MTPAP
TMOD1ENSG00000136842.93420.777202596.751900.3975012.0842010.67660K562NSUN2
TMOD1ENSG00000136842.94342.260303082.117900.494404.990703.87480K562PCBP3
TMOD1ENSG00000136842.91134.871701546.19600-0.446203.922103.03110K562PRPF8
TMOD1ENSG00000136842.91517.890002082.50570-0.456305.843904.90800K562PTBP1
TMOD1ENSG00000136842.92873.015204054.99850-0.497106.652505.38600K562PUF60
TMOD1ENSG00000136842.93632.432104313.19820-0.247802.746101.68490K562PUM1
TMOD1ENSG00000136842.92230.072602789.36410-0.322802.402101.88860K562PUS1
TMOD1ENSG00000136842.91293.388201570.58870-0.280202.289701.39200K562RCC2
TMOD1ENSG00000136842.92647.209202101.374500.333002.621601.56070K562NELFE
TMOD1ENSG00000136842.91752.282001424.154900.299003.965602.09100K562RPS10
TMOD1ENSG00000136842.94323.544402980.911400.536403.360001.60190K562RPS3A
TMOD1ENSG00000136842.92825.848501580.895300.837808.994806.68600K562RRP9
TMOD1ENSG00000136842.93028.040302177.834500.475405.339903.32440K562SDAD1
TMOD1ENSG00000136842.91939.914401323.082600.552003.599401.79990K562SERBP1
TMOD1ENSG00000136842.91372.240001697.34280-0.306702.993102.10280K562SF3B4
TMOD1ENSG00000136842.93641.728902625.151300.4721014.0158012.12610K562SRPK2
TMOD1ENSG00000136842.9818.530502041.55400-1.3186037.1962034.65650K562SRSF1
TMOD1ENSG00000136842.93819.792402690.909600.505308.560805.96040K562SRSF9
TMOD1ENSG00000136842.91895.171401491.557100.345404.334902.68250K562SSB
TMOD1ENSG00000136842.94070.633103247.020700.326002.821301.44760K562SSRP1
TMOD1ENSG00000136842.93863.978502969.868700.379603.248701.86830K562STAU1
TMOD1ENSG00000136842.94522.945203538.021600.354205.059003.09700K562SUCLG1
TMOD1ENSG00000136842.92566.590702066.177000.312802.471601.80060K562TARDBP
TMOD1ENSG00000136842.92056.594701655.363800.313002.150601.33570K562TIAL1
TMOD1ENSG00000136842.93442.966602923.073000.236103.207101.83410K562TROVE2
TMOD1ENSG00000136842.91011.280001582.23990-0.645806.366904.55760K562U2AF1
TMOD1ENSG00000136842.92335.544301584.421400.559706.280204.67660K562UCHL5
TMOD1ENSG00000136842.91840.385502342.89170-0.348303.638301.71680K562UPF2
TMOD1ENSG00000136842.93667.677502355.990300.638407.788906.27450K562WDR3
TMOD1ENSG00000136842.93780.331902449.949800.6257022.3021020.25440K562WDR43
TMOD1ENSG00000136842.94992.458703656.862900.449006.371804.40740K562WRN
TMOD1ENSG00000136842.94881.811803476.232900.489806.707405.27080K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMOD1 is not available on ENCORE database.





7 RBPs can affect the splicing of TMOD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMOD1ENSG00000136842.9chr9+100308466100308623100286422100286590100315562100315682-0.137000.000010.00050excludedK562SRSF1
SETMOD1ENSG00000136842.9chr9+1003375571003377681003311751003313191003535721003537170.075000.000000.00001includedK562AQR
SETMOD1ENSG00000136842.9chr9+100308466100308623100286422100286590100315562100315682-0.068000.001230.04660excludedK562FXR1
SETMOD1ENSG00000136842.9chr9+100308466100308623100286422100286590100315562100315682-0.132000.000010.00685excludedK562LARP4
SETMOD1ENSG00000136842.9chr9+100286422100286590100263920100264085100308466100308623-0.071000.000830.02964excludedK562UTP18
SETMOD1ENSG00000136842.9chr9+1003375571003377681003311751003313191003535721003537170.051000.000290.00701includedK562U2AF2
SETMOD1ENSG00000136842.9chr9+100308466100308623100286422100286590100315562100315682-0.198000.000110.00300excludedK562HNRNPC
MXETMOD1ENSG00000136842.9chr9+100308466100308623100315562100315682100286422100286590100325013100325103-0.067000.003960.058612includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMOD1 is not avaliable on ENCORE database.