TM9SF2

General Information

Gene Name       : TM9SF2
Gene ID             : ENSG00000125304.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TM9SF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TM9SF2ENSG00000125304.960.3255.2457.78ENCSR000AEF
HepG2TM9SF2ENSG00000125304.944.4483.6264.03ENCSR985KAT
K562TM9SF2ENSG00000125304.940.7341.2040.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TM9SF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TM9SF2 RNA is bound by 31 proteins.  







eCLIP assay for TM9SF2 is not avaliable on ENCORE database.





31 proteins are bound to TM9SF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13100215406100215429+3'-UTR4.0828813.89405HepG2DDX55
chr13100215358100215440+3'-UTR3.2039011.11502K562TROVE2
chr13100215519100215591+3'-UTR4.217144.49293HepG2TIAL1
chr13100215397100215480+3'-UTR3.729805.44797K562ZC3H11A
chr13100215368100215426+3'-UTR4.5666219.45589K562PABPC4
chr13100215360100215419+3'-UTR3.527224.54145K562DDX6
chr13100215427100215521+3'-UTR4.018783.70195HepG2UPF1
chr13100215514100215617+3'-UTR3.179998.74427HepG2FUBP3
chr13100214981100215024+3'-UTR,CDS3.025816.46594HepG2LARP4
chr13100215421100215496+3'-UTR3.7195412.89073HepG2LARP4
chr13100215380100215427+3'-UTR3.927073.31824HepG2TIAL1
chr13100215387100215414+3'-UTR5.8270523.47213K562PUM2
chr13100215361100215418+3'-UTR3.499514.40261K562APOBEC3C
chr13100215363100215387+3'-UTR5.4942127.73162K562PUM2
chr13100215353100215421+3'-UTR3.2528014.84058HepG2LARP4
chr13100215349100215358+3'-UTR4.092098.75812K562TROVE2
chr13100215535100215593+3'-UTR4.336024.05830HepG2TIA1
chr13100215373100215406+3'-UTR3.873277.24472HepG2DDX55
chr13100215426100215491+3'-UTR4.4109513.16793K562PABPC4
chr13100215256100215332+3'-UTR4.1175017.19839K562PUM2
chr13100215289100215349+3'-UTR3.784107.24472HepG2DDX55
chr13100215465100215509+3'-UTR3.385746.69575HepG2DDX55
chr13100215140100215208+3'-UTR3.803403.77064HepG2IGF2BP3
chr13100215058100215128+3'-UTR3.169909.11150HepG2LARP4
chr13100215377100215423+3'-UTR3.605897.14852HepG2TIA1
chr13100215091100215122+3'-UTR3.992986.57313K562PABPC4
chr13100215409100215582+3'-UTR3.002733.09370K562NOLC1
chr13100214987100215034+3'-UTR,CDS3.142665.09868HepG2LIN28B
chr13100215429100215465+3'-UTR5.2516512.32975HepG2DDX55
chr13100153813100153956+5'-UTR,CDS4.137537.39763HepG2PCBP1
chr13100153762100153805+5'-UTR3.403128.62286HepG2PCBP2
chr13100153805100153827+5'-UTR4.0534617.45037HepG2PCBP2
chr13100153858100153914+5'-UTR,CDS5.434193.73688K562GEMIN5
chr13100153837100153879+5'-UTR,CDS3.776376.19204K562YBX3
chr13100153762100153844+5'-UTR4.1486642.74941HepG2DDX3X
chr13100153808100153871+5'-UTR,CDS3.001943.61048K562DDX3X
chr13100153827100153926+5'-UTR,CDS3.8767718.07981HepG2PCBP2
chr13100153854100153918+5'-UTR,CDS4.1686519.33496HepG2RPS3
chr13100153699100153750+5'-UTR4.9089315.96203HepG2DDX3X
chr13100153720100153808+5'-UTR5.236299.24431K562DDX3X
chr13100196116100196145+CDS,intron-Proximal3.376187.59025HepG2SND1
chr13100153942100153998+CDS4.4180146.48686HepG2DDX3X
chr13100172293100172386+CDS,intron-Proximal3.644366.74842K562ZNF622
chr13100153961100153999+CDS3.302279.38581HepG2SND1
chr13100211686100211740+CDS4.7162118.26109HepG2SND1
chr13100204503100204563+CDS6.1714512.21080K562SND1
chr13100190071100190111+CDS3.615945.89423K562SND1
chr13100153918100154005+CDS4.6498828.76163HepG2RPS3
chr13100199251100199285+CDS3.323857.87234K562YBX3
chr13100199255100199290+CDS3.4782125.83493HepG2SND1
chr13100193915100193921+CDS3.427735.56131HepG2SND1
chr13100153879100153910+CDS3.272625.56979K562YBX3
chr13100214946100214986+CDS4.691596.47873K562SND1
chr13100191720100191772+CDS3.7048513.54768HepG2SND1
chr13100196085100196156+CDS,intron-Proximal3.284413.13705K562BUD13
chr13100199300100199344+CDS4.4826310.27490HepG2RPS3
chr13100211693100211738+CDS4.184698.32138K562SND1
chr13100196116100196207+CDS,intron-Proximal4.418519.17978HepG2LIN28B
chr13100204455100204487+CDS5.534037.10260HepG2RPS3
chr13100190065100190110+CDS3.5486513.26570HepG2SND1
chr13100196175100196226+CDS3.511849.87834HepG2SND1
chr13100172295100172311+CDS3.9405112.43449HepG2LIN28B
chr13100196067100196147+CDS,intron-Proximal5.0803811.02762K562SF3B4
chr13100199352100199429+CDS,intron-Proximal4.241447.13970HepG2PRPF8
chr13100181725100181774+CDS3.562417.42278HepG2BCLAF1
chr13100211666100211693+CDS5.137535.54797K562SND1
chr13100153864100153942+CDS4.0627942.69334HepG2DDX3X
chr13100199290100199349+CDS4.1452040.51285HepG2SND1
chr13100207789100207801+CDS,intron-Proximal4.713374.57227K562SND1
chr13100192968100192999+CDS3.567753.95762K562SND1
chr13100172295100172361+CDS3.142565.01473K562SND1
chr13100154019100154071+CDS,intron-Proximal3.880856.65114HepG2PRPF8
chr13100207851100207899+CDS4.081857.40502K562SND1
chr13100188861100188928+CDS,intron-Proximal3.846766.94119K562SND1
chr13100153959100154012+CDS3.340688.75080K562YBX3
chr13100204449100204487+CDS3.9736611.98919HepG2SND1
chr13100188987100189070+CDS,intron-Proximal3.761873.47285K562PRPF8
chr13100214951100214981+CDS3.683525.20772HepG2LARP4
chr13100172311100172377+CDS4.1046817.57567HepG2LIN28B
chr13100211700100211749+CDS3.134063.35239HepG2IGF2BP1
chr13100199235100199330+CDS,intron-Proximal3.397256.01220K562SRSF1
chr13100172292100172371+CDS3.535508.11065K562LIN28B
chr13100192982100193023+CDS3.510668.08635HepG2SND1
chr13100204440100204503+CDS4.8377414.09740K562SND1
chr13100153936100153959+CDS3.839655.56704HepG2SND1
chr13100204420100204432+CDS,intron-Proximal3.593393.49838K562SND1
chr13100191795100191811+CDS4.039944.98210K562SND1
chr13100175887100175979+intron-Distal3.214106.71344HepG2HNRNPL
chr13100175882100175978+intron-Distal3.107637.53330K562HNRNPL
chr13100189895100189960+intron-Proximal3.492464.10408K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TM9SF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TM9SF2 is not available on ENCORE database.

  • 84 RBPs can affect the levels of TM9SF2.  








The Knockdown/knockout RNA-Seq assay for TM9SF2 is not available on ENCORE database.





84 RBPs can affect the gene expression of TM9SF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TM9SF2ENSG00000125304.84510.461604045.559700.156802.044301.50690HepG2ACO1
TM9SF2ENSG00000125304.82505.806603512.60490-0.487305.393304.06670HepG2ADAR
TM9SF2ENSG00000125304.83671.622705399.18590-0.556306.544905.36250HepG2ASCC1
TM9SF2ENSG00000125304.86307.224105520.890100.192002.700602.02200HepG2AUH
TM9SF2ENSG00000125304.84103.279303049.093100.428304.385603.27720HepG2BCLAF1
TM9SF2ENSG00000125304.83157.857502594.836900.283202.391901.83100HepG2BOP1
TM9SF2ENSG00000125304.84595.951203385.140700.441006.897305.75150HepG2CALR
TM9SF2ENSG00000125304.86676.421305129.627300.380103.598602.72540HepG2CIRBP
TM9SF2ENSG00000125304.84493.597404044.811000.151702.155601.55760HepG2CKAP4
TM9SF2ENSG00000125304.83764.377902382.209900.660009.860508.64140HepG2CPSF6
TM9SF2ENSG00000125304.83014.918804779.79470-0.6648020.7864019.35750HepG2CELF1
TM9SF2ENSG00000125304.84459.672003425.220800.380604.127603.31460HepG2DDX21
TM9SF2ENSG00000125304.84832.338603350.146600.528408.888707.27640HepG2DDX24
TM9SF2ENSG00000125304.88281.870906250.710800.405803.729003.01340HepG2DDX3X
TM9SF2ENSG00000125304.84542.154003504.426300.374103.579402.43470HepG2DDX5
TM9SF2ENSG00000125304.84364.954503411.491300.355503.569102.46230HepG2DHX30
TM9SF2ENSG00000125304.85098.507403870.538100.397409.056007.97060HepG2DKC1
TM9SF2ENSG00000125304.84103.740203537.104900.214302.460701.79270HepG2DNAJC21
TM9SF2ENSG00000125304.83129.622403505.68400-0.163702.337301.72800HepG2DNAJC2
TM9SF2ENSG00000125304.83080.645002404.452600.357403.125501.94900HepG2EFTUD2
TM9SF2ENSG00000125304.84210.392103152.695800.417302.872901.74310HepG2AGO1
TM9SF2ENSG00000125304.84150.900905070.47360-0.288705.546504.43070HepG2EIF4G1
TM9SF2ENSG00000125304.87177.858604857.298100.563305.027403.94930HepG2EIF4G2
TM9SF2ENSG00000125304.87538.222606338.409600.250004.094203.38830HepG2ETF1
TM9SF2ENSG00000125304.83658.594102871.504900.349403.099601.75740HepG2FKBP4
TM9SF2ENSG00000125304.83863.081503123.391100.306503.193502.35350HepG2FUBP3
TM9SF2ENSG00000125304.85785.585404723.611600.292504.789803.61310HepG2HNRNPA2B1
TM9SF2ENSG00000125304.84576.899002577.080800.8285014.3627013.08310HepG2HNRNPLL
TM9SF2ENSG00000125304.82829.316003945.74730-0.4798012.3487011.14410HepG2HNRNPU
TM9SF2ENSG00000125304.83358.308204030.46090-0.263205.614304.60190HepG2ILF2
TM9SF2ENSG00000125304.86977.224404949.822300.495204.083403.07020HepG2LARP4
TM9SF2ENSG00000125304.84752.006503722.588700.352103.830602.40260HepG2LIN28B
TM9SF2ENSG00000125304.84601.685203214.066100.517708.247206.91780HepG2MSI2
TM9SF2ENSG00000125304.83561.149902628.237700.438102.490501.57460HepG2MTPAP
TM9SF2ENSG00000125304.83186.260302285.058400.479505.687504.63530HepG2NSUN2
TM9SF2ENSG00000125304.83082.723903519.30210-0.191101.941901.31570HepG2PPIL4
TM9SF2ENSG00000125304.83906.748202661.940500.553406.996105.78010HepG2PRPF8
TM9SF2ENSG00000125304.86293.783704865.271300.371304.213303.49560HepG2PUF60
TM9SF2ENSG00000125304.86401.785505164.471500.309806.835905.98940HepG2PUM1
TM9SF2ENSG00000125304.86483.916805160.841400.329203.821003.03730HepG2PUM2
TM9SF2ENSG00000125304.84976.443504120.684100.272105.270104.46950HepG2PUS1
TM9SF2ENSG00000125304.86328.645305297.802400.256403.869603.28420HepG2RBM22
TM9SF2ENSG00000125304.87048.481505218.904300.433504.509603.66560HepG2RBM25
TM9SF2ENSG00000125304.84214.567205909.06860-0.4875013.7680012.73260HepG2NELFE
TM9SF2ENSG00000125304.84520.120905503.39110-0.284005.319404.49920HepG2RECQL
TM9SF2ENSG00000125304.85171.795903867.966500.419002.353001.48030HepG2RPS10
TM9SF2ENSG00000125304.83382.683102633.289700.361203.052402.23290HepG2RRP9
TM9SF2ENSG00000125304.84478.051903513.899000.349706.503605.57860HepG2SAFB2
TM9SF2ENSG00000125304.85751.835604418.623700.380302.464801.82870HepG2SF3A3
TM9SF2ENSG00000125304.83570.126202550.814000.484905.932104.93190HepG2SF3B1
TM9SF2ENSG00000125304.84182.129505528.04250-0.402509.871708.85610HepG2SF3B4
TM9SF2ENSG00000125304.85426.318704664.566900.218103.786902.98630HepG2SLBP
TM9SF2ENSG00000125304.85006.074702838.223200.818607.582006.28100HepG2SNRNP70
TM9SF2ENSG00000125304.86790.505705983.787500.182402.900502.39110HepG2SRFBP1
TM9SF2ENSG00000125304.86473.721505770.029400.165902.209101.77380HepG2SRSF1
TM9SF2ENSG00000125304.85459.723604803.472400.184702.140001.58090HepG2SRSF5
TM9SF2ENSG00000125304.86613.327905195.544400.348008.543907.73990HepG2SSB
TM9SF2ENSG00000125304.84762.867705463.10630-0.197903.713503.01150HepG2SUCLG1
TM9SF2ENSG00000125304.83711.824002681.580700.468906.729605.30660HepG2SUPT6H
TM9SF2ENSG00000125304.84106.358903434.313800.257702.030301.43800HepG2SUPV3L1
TM9SF2ENSG00000125304.84198.817802511.795500.7412012.9009011.51370HepG2TARDBP
TM9SF2ENSG00000125304.82846.737502302.043300.306302.585201.61850HepG2TFIP11
TM9SF2ENSG00000125304.82910.908703834.26370-0.397505.997305.31410HepG2TIAL1
TM9SF2ENSG00000125304.85684.030404752.790200.258002.430501.61540HepG2TUFM
TM9SF2ENSG00000125304.84597.084803918.645100.230303.795302.99760HepG2UPF1
TM9SF2ENSG00000125304.82502.852703380.69830-0.433703.447302.64250HepG2XRN2
TM9SF2ENSG00000125304.83784.922002740.559300.4657013.8758012.56330HepG2ZC3H8
TM9SF2ENSG00000125304.86383.844204309.757500.5667026.8996025.64130HepG2ZNF622
TM9SF2ENSG00000125304.81725.163802082.42510-0.271503.473902.85100K562AGGF1
TM9SF2ENSG00000125304.82861.562203379.45400-0.240001.912701.40780K562AQR
TM9SF2ENSG00000125304.81578.532301977.72830-0.325304.565303.31430K562BCLAF1
TM9SF2ENSG00000125304.8638.19740840.03160-0.396402.895101.81340K562CCAR1
TM9SF2ENSG00000125304.81174.558201500.40130-0.353203.661902.42190K562CSTF2
TM9SF2ENSG00000125304.83174.688604726.80640-0.5743011.057809.18140K562CELF1
TM9SF2ENSG00000125304.81186.603501508.26080-0.346003.225902.09530K562DDX3X
TM9SF2ENSG00000125304.81103.332001375.42290-0.318002.933701.59440K562EWSR1
TM9SF2ENSG00000125304.82328.757101638.679900.506909.473408.43340K562FXR1
TM9SF2ENSG00000125304.82160.669201687.155100.356802.061001.46360K562G3BP2
TM9SF2ENSG00000125304.82824.009303437.41380-0.283602.634201.89600K562GRSF1
TM9SF2ENSG00000125304.81695.161202116.14000-0.320003.191302.03580K562HNRNPA1
TM9SF2ENSG00000125304.82746.738902017.928000.444704.161202.60620K562HNRNPK
TM9SF2ENSG00000125304.81987.141002343.41570-0.237902.347801.52440K562HNRNPU
TM9SF2ENSG00000125304.81342.695902020.32770-0.589505.313003.69890K562IGF2BP2
TM9SF2ENSG00000125304.81614.257901876.04710-0.216802.377901.62810K562MTPAP
TM9SF2ENSG00000125304.81641.197702084.49340-0.344907.119606.00280K562NSUN2
TM9SF2ENSG00000125304.82346.558901552.103100.596207.455206.22460K562PRPF8
TM9SF2ENSG00000125304.8923.457601309.26430-0.503605.163203.87710K562PSIP1
TM9SF2ENSG00000125304.85413.361904195.026100.367704.323503.30960K562PUF60
TM9SF2ENSG00000125304.85428.360804461.478000.282903.784402.51860K562PUM1
TM9SF2ENSG00000125304.81436.608801978.20480-0.461504.903803.74620K562RBM22
TM9SF2ENSG00000125304.81219.545301754.80220-0.525007.489906.03780K562SF3B4
TM9SF2ENSG00000125304.81849.474002107.23980-0.188202.216401.37010K562SRPK2
TM9SF2ENSG00000125304.81520.844601909.98210-0.328702.679701.65010K562SRSF5
TM9SF2ENSG00000125304.81405.849801699.23550-0.273403.111301.86520K562SRSF7
TM9SF2ENSG00000125304.81870.957401374.091300.445204.473403.42280K562SYNCRIP
TM9SF2ENSG00000125304.81678.230402046.82510-0.286402.032401.41980K562TARDBP
TM9SF2ENSG00000125304.81060.223001337.77090-0.335502.648401.72710K562TRIM56
TM9SF2ENSG00000125304.82610.783902210.229600.240203.157102.39260K562UPF1
TM9SF2ENSG00000125304.83149.819603807.37750-0.273502.454501.65020K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TM9SF2 is not available on ENCORE database.





13 RBPs can affect the splicing of TM9SF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETM9SF2ENSG00000125304.8chr13+100189992100190117100188861100188991100192967100193047-0.111000.000220.07168excludedK562IGF2BP2
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.142000.000000.00000excludedK562SF3B4
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.060000.000070.00389excludedK562AKAP8L
SETM9SF2ENSG00000125304.8chr13+100211616100211788100207789100207901100214944100216260-0.067000.001450.01929excludedHepG2U2AF2
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189979100190117100192967100193047-0.074000.000000.00000excludedK562AQR
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.073000.000000.00011excludedK562PUS1
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.071000.000370.00995excludedK562U2AF1
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.087000.000000.00020excludedK562HNRNPUL1
SETM9SF2ENSG00000125304.8chr13+100189992100190117100188861100188991100192967100193047-0.246000.000000.00000excludedK562UTP18
SETM9SF2ENSG00000125304.8chr13+100189992100190117100188861100188991100192967100193047-0.175000.000000.00002excludedK562TARDBP
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.078000.000000.00011excludedK562RBM15
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.076000.000010.00087excludedK562AGGF1
SETM9SF2ENSG00000125304.8chr13+1001718011001718821001698671001699351001722891001723830.051000.000950.01847includedK562HNRNPC
SETM9SF2ENSG00000125304.8chr13+100191699100191811100189992100190117100192967100193047-0.081000.000060.00166excludedK562HNRNPC
MXETM9SF2ENSG00000125304.8chr13+1001888611001889911001916991001918111001722891001723831001929671001930470.116000.000000.000001includedK562AQR
MXETM9SF2ENSG00000125304.8chr13+100191699100191811100192967100193047100189992100190117100193812100193921-0.119000.002050.033592includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TM9SF2 is not avaliable on ENCORE database.