TATDN1

General Information

Gene Name       : TATDN1
Gene ID             : ENSG00000147687.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TATDN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TATDN1ENSG00000147687.1848.7736.5442.66ENCSR000AEF
HepG2TATDN1ENSG00000147687.1814.3231.3122.81ENCSR985KAT
K562TATDN1ENSG00000147687.1847.6245.5246.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TATDN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TATDN1 RNA is bound by 10 proteins.  







eCLIP assay for TATDN1 is not avaliable on ENCORE database.





10 proteins are bound to TATDN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8125500761125500792-3'-UTR,intron-Distal,intron-Proximal4.632469.84602K562PABPC4
chr8125516354125516458-3'-UTR,intron-Distal,intron-Proximal3.293723.48890K562KHSRP
chr8125535175125535244-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.881957.89340K562DDX3X
chr8125551204125551275-5'-UTR,CDS,intron-Distal3.651535.03897K562PRPF8
chr8125551226125551319-5'-UTR,CDS,intron-Distal,intron-Proximal4.8076710.09745HepG2PRPF8
chr8125551259125551313-5'-UTR,CDS,intron-Distal,intron-Proximal5.779887.12859K562DDX3X
chr8125551268125551320-5'-UTR,CDS,intron-Distal,intron-Proximal4.072103.58858HepG2NCBP2
chr8125516180125516280-CDS,intron-Distal,intron-Proximal3.520053.16095HepG2U2AF2
chr8125515396125515500-intron-Distal4.863557.17216HepG2QKI
chr8125547847125547932-intron-Distal4.363964.89163HepG2HNRNPL
chr8125544275125544356-intron-Distal4.157486.53456HepG2PCBP2
chr8125524924125524997-intron-Distal3.280733.51804HepG2HNRNPL
chr8125513486125513549-intron-Distal4.058033.86809HepG2SUGP2
chr8125513360125513435-intron-Distal3.270023.69184HepG2SUGP2
chr8125532058125532170-intron-Distal3.796203.19026HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TATDN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TATDN1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of TATDN1.  








The Knockdown/knockout RNA-Seq assay for TATDN1 is not available on ENCORE database.





65 RBPs can affect the gene expression of TATDN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TATDN1ENSG00000147687.12346.47110255.837900.437402.804502.19350HepG2ACO1
TATDN1ENSG00000147687.12292.86050435.05460-0.571004.785303.92420HepG2AUH
TATDN1ENSG00000147687.12275.19540415.30220-0.593703.443802.58690HepG2CIRBP
TATDN1ENSG00000147687.12245.42070368.11570-0.584902.403201.69360HepG2CNOT7
TATDN1ENSG00000147687.12171.10200250.85810-0.552002.529801.87830HepG2DDX21
TATDN1ENSG00000147687.12282.54870506.08750-0.840906.604005.67930HepG2DDX3X
TATDN1ENSG00000147687.12162.93990251.77400-0.627802.665501.75760HepG2EEF2
TATDN1ENSG00000147687.12224.73740417.92700-0.895006.631805.73730HepG2EIF2S1
TATDN1ENSG00000147687.12322.50530461.87720-0.518202.719002.08530HepG2EIF4A3
TATDN1ENSG00000147687.12558.68380410.273500.445303.315102.41400HepG2EIF4G1
TATDN1ENSG00000147687.12292.57140393.02670-0.425802.307601.55970HepG2EIF4G2
TATDN1ENSG00000147687.12311.77780465.95800-0.579703.499602.72760HepG2FXR1
TATDN1ENSG00000147687.12239.79390432.27420-0.850206.267905.28660HepG2G3BP1
TATDN1ENSG00000147687.12226.87780318.62850-0.490002.045501.49010HepG2GPKOW
TATDN1ENSG00000147687.12176.09390267.29000-0.602102.788502.13950HepG2HNRNPA1
TATDN1ENSG00000147687.12202.11720297.32090-0.556802.661601.98070HepG2HNRNPC
TATDN1ENSG00000147687.12221.23590294.71610-0.413702.241901.59150HepG2HNRNPF
TATDN1ENSG00000147687.12185.75610290.20990-0.643703.955803.10380HepG2IGF2BP1
TATDN1ENSG00000147687.12265.86130439.40790-0.724905.052204.16450HepG2IGF2BP2
TATDN1ENSG00000147687.12352.94290466.12040-0.401301.955701.40010HepG2MAGOH
TATDN1ENSG00000147687.12221.24980479.78740-1.1167010.086108.92110HepG2NCBP2
TATDN1ENSG00000147687.12364.61500269.605500.435401.960101.32550HepG2NSUN2
TATDN1ENSG00000147687.12271.64300427.31640-0.653604.150803.27820HepG2PABPC4
TATDN1ENSG00000147687.12279.70830458.12670-0.711806.758405.97760HepG2PTBP1
TATDN1ENSG00000147687.12255.64890393.67660-0.622804.384003.65380HepG2PUF60
TATDN1ENSG00000147687.12180.86090260.58930-0.526903.007502.37190HepG2PUS1
TATDN1ENSG00000147687.12358.74720496.10270-0.467703.139902.48100HepG2QKI
TATDN1ENSG00000147687.12462.11720350.531800.398602.384301.58230HepG2RBM15
TATDN1ENSG00000147687.12282.51610450.26770-0.672405.142704.24990HepG2RBM25
TATDN1ENSG00000147687.12306.96930509.82770-0.731907.168306.36750HepG2NELFE
TATDN1ENSG00000147687.12343.22050474.87760-0.468403.352602.68200HepG2RECQL
TATDN1ENSG00000147687.12201.69150314.45360-0.640703.127002.27590HepG2RPS2
TATDN1ENSG00000147687.12258.03760369.53190-0.518102.311401.57810HepG2RPS3A
TATDN1ENSG00000147687.12576.23290334.890000.782904.003503.05470HepG2SNRNP70
TATDN1ENSG00000147687.12247.80380497.82040-1.0064012.1272011.28690HepG2SRSF1
TATDN1ENSG00000147687.12218.13340289.55360-0.408602.141701.52050HepG2SRSF7
TATDN1ENSG00000147687.12279.25430409.39430-0.551904.602403.97490HepG2SSB
TATDN1ENSG00000147687.12333.93720447.51750-0.422402.645902.09630HepG2TAF15
TATDN1ENSG00000147687.12211.89310296.33150-0.483902.143901.49390HepG2TARDBP
TATDN1ENSG00000147687.12164.19770286.95410-0.805405.747505.07680HepG2TIAL1
TATDN1ENSG00000147687.12184.97370258.62000-0.483502.616601.93390HepG2UPF1
TATDN1ENSG00000147687.12337.37330249.688600.434102.508601.93280HepG2UTP3
TATDN1ENSG00000147687.12446.15850294.892700.597303.228601.81740HepG2ZRANB2
TATDN1ENSG00000147687.12605.51720934.45340-0.626004.107303.30890K562AKAP8L
TATDN1ENSG00000147687.12778.263001155.55650-0.570305.723404.93240K562AQR
TATDN1ENSG00000147687.12791.986001035.16110-0.386304.144602.77090K562CPEB4
TATDN1ENSG00000147687.12532.52080675.90680-0.344002.269001.55250K562CPSF6
TATDN1ENSG00000147687.12346.74210477.83870-0.462703.101801.99360K562DDX3X
TATDN1ENSG00000147687.121519.085101070.994400.504205.836404.94110K562DDX47
TATDN1ENSG00000147687.12409.12360576.39370-0.494503.096502.12760K562EFTUD2
TATDN1ENSG00000147687.12384.57290617.26400-0.682604.410003.06620K562EIF3D
TATDN1ENSG00000147687.12546.80790728.30830-0.413502.203001.44570K562FIP1L1
TATDN1ENSG00000147687.12505.56740687.67630-0.443802.385001.58950K562FMR1
TATDN1ENSG00000147687.12964.69640674.981600.515103.284302.50150K562G3BP2
TATDN1ENSG00000147687.12496.59650645.34240-0.378002.366401.63030K562GPKOW
TATDN1ENSG00000147687.12439.05230592.79350-0.433102.837102.23360K562HNRNPC
TATDN1ENSG00000147687.12994.04500690.401500.525804.289302.71200K562HNRNPK
TATDN1ENSG00000147687.121101.11220598.988000.878309.883807.89310K562HNRNPM
TATDN1ENSG00000147687.121769.82510987.510000.841607.118705.85370K562HSPD1
TATDN1ENSG00000147687.12417.89360601.09060-0.524403.503501.80060K562LIN28B
TATDN1ENSG00000147687.12988.74110726.395600.444703.991102.97600K562MAGOH
TATDN1ENSG00000147687.12492.07770629.91870-0.356302.178201.40020K562METAP2
TATDN1ENSG00000147687.12663.872501102.75610-0.732102.904101.40460K562PPP1R8
TATDN1ENSG00000147687.12387.49270531.48360-0.455902.641401.76180K562PSIP1
TATDN1ENSG00000147687.12722.93760926.96270-0.358601.977701.50410K562PUS1
TATDN1ENSG00000147687.12714.47840902.98550-0.337802.017901.49670K562RBM15
TATDN1ENSG00000147687.12480.04220640.59160-0.416202.961001.57680K562RBM25
TATDN1ENSG00000147687.12572.520001034.38390-0.853403.896302.24070K562SFPQ
TATDN1ENSG00000147687.12363.77510691.80090-0.927308.532807.29570K562SRSF1
TATDN1ENSG00000147687.12539.85200675.42500-0.323202.062501.36330K562TIA1
TATDN1ENSG00000147687.12348.82050511.20880-0.551403.402602.35960K562TIAL1
TATDN1ENSG00000147687.12411.67320542.99690-0.399402.344601.48500K562TRIM56
TATDN1ENSG00000147687.121036.04120676.001900.615908.173606.77770K562U2AF2
TATDN1ENSG00000147687.12908.69290681.711900.414505.190404.06250K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TATDN1 is not available on ENCORE database.





15 RBPs can affect the splicing of TATDN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETATDN1ENSG00000147687.12chr8-125534391125534441125530982125531122125535177125535243-0.232000.000000.00000excludedK562SRSF1
SETATDN1ENSG00000147687.12chr8-125527986125528029125520847125520929125551265125551699-0.199000.000000.00001excludedK562SF3B4
SETATDN1ENSG00000147687.12chr8-125534391125534441125530982125531122125535177125535243-0.147000.000160.01986excludedK562XRCC6
SETATDN1ENSG00000147687.12chr8-125527986125528029125520843125520929125551265125551699-0.099000.000000.00001excludedK562AQR
SETATDN1ENSG00000147687.12chr8-125535177125535243125520843125520929125551265125551335-0.084000.000820.01456excludedK562PUS1
SETATDN1ENSG00000147687.12chr8-1255343911255344411255309821255311221255351771255352430.145000.000350.08665includedHepG2EFTUD2
SETATDN1ENSG00000147687.12chr8-1255343911255344411255309821255311221255351771255352430.185000.000010.00252includedHepG2HNRNPA1
SETATDN1ENSG00000147687.12chr8-1255160801255161921255077121255077831255165111255165880.167000.000090.01037includedK562HNRNPL
SETATDN1ENSG00000147687.12chr8-125507712125507783125506073125506200125516511125516588-0.059000.004360.06492excludedK562U2AF2
SETATDN1ENSG00000147687.12chr8-1255343911255344411255309821255311221255351771255352430.150000.000100.00694includedHepG2HNRNPU
SETATDN1ENSG00000147687.12chr8-125534391125534441125530982125531122125535177125535243-0.076000.007550.09506excludedK562HNRNPC
A3SSTATDN1ENSG00000147687.12chr8-1255310581255311991255310581255311221255351771255353130.080000.000680.00492longerK562AQR
A5SSTATDN1ENSG00000147687.12chr8-125530982125531122125531058125531122125528127125528271-0.081000.000500.07039shorterK562TARDBP
A5SSTATDN1ENSG00000147687.12chr8-125530982125531122125531058125531122125528127125528271-0.118000.001010.09098shorterHepG2SRSF9
A5SSTATDN1ENSG00000147687.12chr8-125551168125551329125551265125551329125535177125535243-0.110000.000040.00390shorterK562SRSF1
A5SSTATDN1ENSG00000147687.12chr8-125551168125551329125551265125551329125535177125535243-0.083000.000180.04200shorterK562SF3B1
A5SSTATDN1ENSG00000147687.12chr8-1255511681255513191255512651255513191255351771255352430.119000.000000.00104longerK562HNRNPL
MXETATDN1ENSG00000147687.12chr8-125527986125528029125528127125528271125520843125520929125531058125531122-0.085000.000010.004072includedK562LARP4
MXETATDN1ENSG00000147687.12chr8-1255281271255282711255310581255311221255279861255280291255351771255352430.253000.000100.002921includedK562SRSF1
MXETATDN1ENSG00000147687.12chr8-125528127125528271125531058125531122125527986125528029125535177125535243-0.103000.005170.037002includedK562AQR
MXETATDN1ENSG00000147687.12chr8-125528127125528191125531058125531122125527986125528029125534391125534441-0.073000.012930.077972includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TATDN1 is not avaliable on ENCORE database.