SUPT4H1

General Information

Gene Name       : SUPT4H1
Gene ID             : ENSG00000213246.6
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SUPT4H1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SUPT4H1ENSG00000213246.662.4676.5669.51ENCSR000AEF
HepG2SUPT4H1ENSG00000213246.6165.36165.52165.44ENCSR985KAT
K562SUPT4H1ENSG00000213246.683.5593.8388.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SUPT4H1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SUPT4H1 RNA is bound by 18 proteins.  







eCLIP assay for SUPT4H1 is not avaliable on ENCORE database.





18 proteins are bound to SUPT4H1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr175642345956423521-3'-UTR,intron-Distal,intron-Proximal3.663345.73713K562IGF2BP1
chr175642318556423233-3'-UTR,intron-Distal,intron-Proximal3.120623.87559K562YBX3
chr175642311756423200-3'-UTR,intron-Distal,intron-Proximal3.115905.87674K562FAM120A
chr175642332656423371-3'-UTR,intron-Distal,intron-Proximal3.804447.13820K562UPF1
chr175642260056422688-3'-UTR,intron-Distal,intron-Proximal4.213689.82885K562FAM120A
chr175642355256423610-3'-UTR,intron-Distal,intron-Proximal3.851064.74431HepG2LARP4
chr175642340056423451-3'-UTR,intron-Distal4.173063.06406HepG2IGF2BP1
chr175642484156424953-3'-UTR,CDS,intron-Distal,intron-Proximal5.330029.60578HepG2AQR
chr175642261256422703-3'-UTR,intron-Distal3.2935012.30326K562UPF1
chr175642332756423385-3'-UTR,intron-Distal,intron-Proximal3.990773.01429K562IGF2BP1
chr175642305256423097-3'-UTR,intron-Distal4.892946.02674K562UPF1
chr175642475656424897-3'-UTR,CDS,intron-Distal,intron-Proximal4.708599.08030K562AQR
chr175642339556423452-3'-UTR,intron-Distal3.221086.82148K562IGF2BP2
chr175642309156423200-3'-UTR,intron-Distal,intron-Proximal4.761496.96152HepG2UPF1
chr175642293556422972-3'-UTR,intron-Distal3.721425.00478HepG2PCBP2
chr175642301356423081-3'-UTR,intron-Distal4.599995.64683K562YBX3
chr175642323356423311-3'-UTR,intron-Distal,intron-Proximal,polyA_site5.3104610.72574K562YBX3
chr175642331656423418-3'-UTR,intron-Distal,intron-Proximal3.7975513.87076HepG2LARP4
chr175642331056423376-3'-UTR,intron-Distal,intron-Proximal3.978105.42819K562PABPC4
chr175642332456423400-3'-UTR,intron-Distal,intron-Proximal5.094078.77423HepG2DDX55
chr175642348156423552-3'-UTR,intron-Distal,intron-Proximal4.568509.16812HepG2LARP4
chr175642310656423173-3'-UTR,intron-Distal3.510184.75109K562UPF1
chr175642945856429554-5'-UTR,CDS,intron-Distal,intron-Proximal4.3068820.80710K562DDX3X
chr175642942856429553-5'-UTR,CDS,intron-Distal,intron-Proximal4.527883.24327K562EIF3G
chr175642942456429458-5'-UTR,CDS,intron-Distal,intron-Proximal4.9461717.24853K562DDX3X
chr175642965856429663-5'-UTR,intron-Distal,intron-Proximal4.579563.15956HepG2DHX30
chr175642938656429445-5'-UTR,CDS,intron-Distal,intron-Proximal3.626546.87008HepG2PRPF8
chr175642942556429480-5'-UTR,CDS,intron-Distal,intron-Proximal3.143683.13727HepG2DDX3X
chr175642884456428887-5'-UTR,CDS,intron-Distal,intron-Proximal4.2955412.40879HepG2U2AF2
chr175642943756429532-5'-UTR,CDS,intron-Distal,intron-Proximal3.509303.39306HepG2GRWD1
chr175642936456429427-5'-UTR,CDS,intron-Distal,intron-Proximal5.371758.52745HepG2AQR
chr175642883956428869-5'-UTR,CDS,intron-Distal4.2222813.41210K562DDX3X
chr175642966356429679-5'-UTR,intron-Distal4.579563.15956HepG2DHX30
chr175642935256429422-CDS,intron-Distal,intron-Proximal4.992115.65342K562AQR
chr175642935856429402-CDS,intron-Distal,intron-Proximal4.166093.25631HepG2PRPF4
chr175642925056429358-intron-Distal,intron-Proximal3.799897.25168HepG2PRPF4
chr175642926956429335-intron-Distal,intron-Proximal4.255414.41148HepG2GTF2F1
chr175642926356429352-intron-Distal,intron-Proximal3.278565.46476K562AQR
chr175642931056429364-intron-Distal,intron-Proximal4.979896.03362HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SUPT4H1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SUPT4H1 is not available on ENCORE database.

  • 86 RBPs can affect the levels of SUPT4H1.  








The Knockdown/knockout RNA-Seq assay for SUPT4H1 is not available on ENCORE database.





86 RBPs can affect the gene expression of SUPT4H1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SUPT4H1ENSG00000213246.21855.685001438.247100.367506.141705.30790HepG2ACO1
SUPT4H1ENSG00000213246.21787.507801437.877500.313904.952204.11020HepG2CKAP4
SUPT4H1ENSG00000213246.22652.257701608.236800.721605.320604.25730HepG2CNOT7
SUPT4H1ENSG00000213246.21233.61100990.745900.316202.317801.32550HepG2CSTF2
SUPT4H1ENSG00000213246.21853.218901561.419500.247102.384601.31340HepG2DDX1
SUPT4H1ENSG00000213246.21307.578001631.45780-0.319302.334401.40600HepG2DDX5
SUPT4H1ENSG00000213246.22057.752302697.35530-0.390502.772502.15450HepG2DDX6
SUPT4H1ENSG00000213246.21735.555801375.998000.334804.406603.58800HepG2DKC1
SUPT4H1ENSG00000213246.22012.300801448.168100.474504.386203.25150HepG2EEF2
SUPT4H1ENSG00000213246.21502.418502593.39420-0.7876010.760909.63930HepG2EIF2S1
SUPT4H1ENSG00000213246.22321.537602866.18000-0.304001.841801.31600HepG2EIF4A3
SUPT4H1ENSG00000213246.21465.381402790.29520-0.9291010.111108.83730HepG2EIF4B
SUPT4H1ENSG00000213246.21941.240102401.82840-0.307204.330603.32660HepG2EIF4G1
SUPT4H1ENSG00000213246.21788.508102300.78770-0.363402.693201.88940HepG2EIF4G2
SUPT4H1ENSG00000213246.23200.453602628.579600.283904.298203.57730HepG2ETF1
SUPT4H1ENSG00000213246.21751.351101405.373800.317402.837801.99240HepG2EWSR1
SUPT4H1ENSG00000213246.21337.332401820.37900-0.444903.778202.86790HepG2FUBP3
SUPT4H1ENSG00000213246.22027.429902891.32710-0.512105.202004.27330HepG2FXR1
SUPT4H1ENSG00000213246.22286.149502847.35660-0.316702.374301.55290HepG2G3BP2
SUPT4H1ENSG00000213246.21810.534901409.540500.361102.473001.86450HepG2GPKOW
SUPT4H1ENSG00000213246.21989.414101545.750300.363902.306001.71170HepG2HNRNPA1
SUPT4H1ENSG00000213246.22101.433302715.53200-0.369903.345902.58090HepG2HNRNPK
SUPT4H1ENSG00000213246.21417.546801707.96140-0.268903.330002.67010HepG2HNRNPU
SUPT4H1ENSG00000213246.21846.515202726.70780-0.562406.039005.07890HepG2IGF2BP2
SUPT4H1ENSG00000213246.21984.543601744.632100.185802.423601.73220HepG2ILF2
SUPT4H1ENSG00000213246.22046.387202742.41720-0.422402.713001.72210HepG2KHSRP
SUPT4H1ENSG00000213246.21912.750902892.33420-0.596606.626605.62330HepG2MAGOH
SUPT4H1ENSG00000213246.22262.021602908.60820-0.362702.511201.90750HepG2MATR3
SUPT4H1ENSG00000213246.21723.058901230.245500.485902.537001.52730HepG2METAP2
SUPT4H1ENSG00000213246.22246.488902977.19200-0.406303.235902.55280HepG2NCBP2
SUPT4H1ENSG00000213246.22029.192102414.03680-0.250502.460301.74370HepG2NOL12
SUPT4H1ENSG00000213246.21503.835302651.70470-0.8183011.274209.84310HepG2PABPC4
SUPT4H1ENSG00000213246.21947.025901690.633800.203602.042201.30560HepG2PARN
SUPT4H1ENSG00000213246.22018.526902643.42500-0.389107.320206.41000HepG2PCBP1
SUPT4H1ENSG00000213246.21135.120501442.27680-0.345504.231703.29820HepG2PRPF4
SUPT4H1ENSG00000213246.21763.750502689.70960-0.6088016.0798014.97080HepG2PTBP1
SUPT4H1ENSG00000213246.22092.416502444.47270-0.224401.936701.36940HepG2PUM2
SUPT4H1ENSG00000213246.21812.438601464.939700.307004.445003.69970HepG2PUS1
SUPT4H1ENSG00000213246.21922.704202913.18000-0.5995012.3106011.12980HepG2QKI
SUPT4H1ENSG00000213246.22812.730301818.701100.629003.789202.96880HepG2RAVER1
SUPT4H1ENSG00000213246.23203.722402197.027500.5441012.1666011.23840HepG2RBM22
SUPT4H1ENSG00000213246.21795.108302643.83840-0.558608.649507.50650HepG2RBM25
SUPT4H1ENSG00000213246.21953.713902993.45020-0.6156016.7183015.60400HepG2NELFE
SUPT4H1ENSG00000213246.21947.377602787.88020-0.5176012.3061011.14540HepG2RECQL
SUPT4H1ENSG00000213246.22735.714902277.006500.264702.071301.47040HepG2RPLP0
SUPT4H1ENSG00000213246.21395.157201143.905400.286402.193701.63920HepG2RPS19
SUPT4H1ENSG00000213246.21094.266401521.03610-0.475108.825107.77360HepG2SAFB2
SUPT4H1ENSG00000213246.23351.322101691.518800.986308.405607.17890HepG2SF3A3
SUPT4H1ENSG00000213246.21716.005202800.46790-0.7066021.3389019.95220HepG2SF3B4
SUPT4H1ENSG00000213246.21800.605602209.63020-0.295304.782003.89880HepG2SLBP
SUPT4H1ENSG00000213246.23059.896001481.467001.0464011.202209.64480HepG2SNRNP70
SUPT4H1ENSG00000213246.23085.683502481.499300.314305.973405.31490HepG2SRFBP1
SUPT4H1ENSG00000213246.21125.520502275.31190-1.0155036.4740034.57120HepG2SRSF5
SUPT4H1ENSG00000213246.21745.536102377.99210-0.446108.945208.05330HepG2SRSF9
SUPT4H1ENSG00000213246.22510.724502154.594700.220602.942102.41730HepG2SSB
SUPT4H1ENSG00000213246.2989.984201352.31460-0.450002.692401.47020HepG2STAU1
SUPT4H1ENSG00000213246.22047.034902587.63470-0.338106.421705.54340HepG2SUCLG1
SUPT4H1ENSG00000213246.21114.149201367.13190-0.295202.704901.77320HepG2SUPT6H
SUPT4H1ENSG00000213246.22060.442501569.817700.392302.977002.27910HepG2SUPV3L1
SUPT4H1ENSG00000213246.22676.560701771.862200.595002.552901.52490HepG2TBRG4
SUPT4H1ENSG00000213246.21796.063202414.18110-0.426705.641104.45970HepG2TIA1
SUPT4H1ENSG00000213246.22024.557701659.736700.286602.927402.41560HepG2TIAL1
SUPT4H1ENSG00000213246.21388.209201674.43070-0.270403.282102.67960HepG2TRIM56
SUPT4H1ENSG00000213246.21316.77890927.361000.505704.569703.59140HepG2UCHL5
SUPT4H1ENSG00000213246.22091.853201448.307900.5303011.6706010.57530HepG2UTP3
SUPT4H1ENSG00000213246.21657.779501423.313100.219902.604101.94920HepG2ZC3H8
SUPT4H1ENSG00000213246.21954.690401649.844600.244503.560102.96080HepG2ZNF622
SUPT4H1ENSG00000213246.21650.542501259.674800.389805.651504.88540K562AGGF1
SUPT4H1ENSG00000213246.21793.638201310.740200.452404.720803.86010K562AKAP8L
SUPT4H1ENSG00000213246.23198.239801896.702100.7537012.8088011.67910K562AQR
SUPT4H1ENSG00000213246.2954.806501247.44880-0.385705.053803.73970K562BCLAF1
SUPT4H1ENSG00000213246.2993.666501314.40850-0.403603.968603.03020K562CPSF6
SUPT4H1ENSG00000213246.22242.579801762.210000.347702.835102.17530K562DDX47
SUPT4H1ENSG00000213246.21032.056901286.14710-0.317502.595701.37070K562EXOSC5
SUPT4H1ENSG00000213246.22171.048201572.715300.465004.996903.83400K562FIP1L1
SUPT4H1ENSG00000213246.21449.47910918.099600.6587012.3006011.11810K562FXR1
SUPT4H1ENSG00000213246.22240.474401293.561600.7924010.053508.04180K562HNRNPM
SUPT4H1ENSG00000213246.21266.035601515.12020-0.259102.340401.51840K562HNRNPU
SUPT4H1ENSG00000213246.22701.399602132.294900.341202.908702.09380K562HSPD1
SUPT4H1ENSG00000213246.21703.829101391.052800.292502.278701.53920K562KIF1C
SUPT4H1ENSG00000213246.21583.538901092.271300.535703.820402.73910K562NAA15
SUPT4H1ENSG00000213246.21208.043301481.45470-0.294303.388602.57050K562NSUN2
SUPT4H1ENSG00000213246.22234.376001785.315300.323602.520601.74240K562PPIG
SUPT4H1ENSG00000213246.21699.37760974.753200.8018011.334309.80940K562PRPF8
SUPT4H1ENSG00000213246.22365.357701299.955700.8635012.7702011.64970K562PUS1
SUPT4H1ENSG00000213246.21849.553801266.560400.546208.886707.85080K562RBM15
SUPT4H1ENSG00000213246.21430.35000992.963600.526504.395103.36150K562RPS19
SUPT4H1ENSG00000213246.2693.57140906.97430-0.387002.784801.51580K562SLBP
SUPT4H1ENSG00000213246.21666.672501101.933600.596808.398907.17400K562SRSF1
SUPT4H1ENSG00000213246.21214.693401887.38350-0.635807.088605.02910K562STAU1
SUPT4H1ENSG00000213246.21602.460301258.640000.348303.579602.64630K562SYNCRIP
SUPT4H1ENSG00000213246.21327.876801570.81070-0.242402.388901.71850K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SUPT4H1 is not available on ENCORE database.





5 RBPs can affect the splicing of SUPT4H1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESUPT4H1ENSG00000213246.2chr17-564248895642494556424548564246025642876256428869-0.281000.000000.00000excludedK562SF3B4
SESUPT4H1ENSG00000213246.2chr17-564248895642494556424548564246025642876256428869-0.079000.000200.00514excludedHepG2U2AF1
SESUPT4H1ENSG00000213246.2chr17-5642913156429207564286935642886956429425564297840.060000.000150.00240includedK562AQR
SESUPT4H1ENSG00000213246.2chr17-564248895642494556424548564246025642876256428982-0.093000.000000.00001excludedK562AQR
SESUPT4H1ENSG00000213246.2chr17-564248895642494556424548564246025642876256428869-0.083000.000370.01381excludedHepG2SF3A3
SESUPT4H1ENSG00000213246.2chr17-564248895642494556424548564246025642876256428869-0.219000.000000.00000excludedHepG2SF3B4
SESUPT4H1ENSG00000213246.2chr17-564248895642494556424548564246025642876256428869-0.159000.000000.00007excludedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SUPT4H1 is not avaliable on ENCORE database.