SUGP1

General Information

Gene Name       : SUGP1
Gene ID             : ENSG00000105705.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SUGP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SUGP1ENSG00000105705.1512.5325.6819.11ENCSR000AEF
HepG2SUGP1ENSG00000105705.1524.2411.4917.86ENCSR985KAT
K562SUGP1ENSG00000105705.1525.3124.6925.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SUGP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SUGP1 RNA is bound by 20 proteins.  







eCLIP assay for SUGP1 is not avaliable on ENCORE database.





20 proteins are bound to SUGP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191941661419416746-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.066468.66150HepG2PPIG
chr191941260119412676-3'-UTR,intron-Distal4.026833.80314K562CSTF2T
chr191941662919416709-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.087304.79107K562SRSF1
chr191941663119416740-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.231834.19468HepG2SRSF1
chr191941447719414560-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.4592010.26986HepG2PRPF8
chr191941308119413150-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.007523.17744HepG2GRWD1
chr191938853519388623-3'-UTR,CDS,intron-Distal,intron-Proximal4.440003.28061K562DDX55
chr191941461819414664-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.499143.95921HepG2U2AF2
chr191938949819389571-3'-UTR,CDS,intron-Distal,intron-Proximal3.966164.68902HepG2PPIG
chr191941661219416679-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.794908.72621HepG2PRPF8
chr191941422519414275-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.198125.43260HepG2U2AF2
chr191941661519416728-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.619916.74842K562ZNF622
chr191941660719416660-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.077074.52312K562AQR
chr191939003019390117-3'-UTR,CDS,intron-Distal3.606213.59112HepG2PPIG
chr191941307319413141-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.337624.56058HepG2BCLAF1
chr191941417819414291-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.957169.18050K562BUD13
chr191942718319427262-5'-UTR,CDS,intron-Distal,intron-Proximal4.831155.65342K562AQR
chr191943121219431318-5'-UTR,CDS,intron-Distal,intron-Proximal4.829386.40909HepG2NCBP2
chr191942729619427379-CDS,intron-Distal,intron-Proximal3.549055.35682HepG2GRWD1
chr191942731319427404-CDS,intron-Distal,intron-Proximal4.250414.61711HepG2NCBP2
chr191941205919412169-intron-Distal3.000993.30948HepG2PRPF4
chr191941635519416469-intron-Distal,intron-Proximal4.151553.02324K562XRN2
chr191942103019421089-intron-Distal,intron-Proximal4.308363.00258HepG2RBM5
chr191941639219416472-intron-Distal,intron-Proximal3.035293.22699HepG2DGCR8
chr191939110219391152-intron-Distal,intron-Proximal4.065504.07325HepG2SF3B4
chr191940444219404560-intron-Distal4.436165.29390K562TARDBP
chr191941513619415227-intron-Distal4.7709413.41826K562LIN28B
chr191941205619412127-intron-Distal3.526835.02933K562CSTF2T
chr191941511619415228-intron-Distal3.772126.18596HepG2LIN28B
chr191941608219416180-intron-Distal3.127813.47525HepG2DGCR8
chr191942084419420906-intron-Distal,intron-Proximal4.085045.47926K562AQR
chr191940816119408221-intron-Distal,intron-Proximal4.019434.84268K562SF3B4
chr191941593719415987-intron-Distal4.484324.40356K562DGCR8
chr191941640619416484-intron-Distal,intron-Proximal3.763383.03048HepG2GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SUGP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SUGP1 is not available on ENCORE database.

  • 60 RBPs can affect the levels of SUGP1.  








The Knockdown/knockout RNA-Seq assay for SUGP1 is not available on ENCORE database.





60 RBPs can affect the gene expression of SUGP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SUGP1ENSG00000105705.11537.22530413.164100.378703.063802.42840HepG2ACO1
SUGP1ENSG00000105705.11553.80130401.514600.463802.260001.77460HepG2AKAP1
SUGP1ENSG00000105705.11468.42490315.068400.572102.692101.77010HepG2BCCIP
SUGP1ENSG00000105705.11438.77530315.618000.475202.522001.77910HepG2CIRBP
SUGP1ENSG00000105705.11461.07620263.425100.807504.392003.42440HepG2CNOT7
SUGP1ENSG00000105705.11568.56240429.144000.405803.376102.68050HepG2CELF1
SUGP1ENSG00000105705.11490.41850382.119800.359902.735101.90540HepG2DDX19B
SUGP1ENSG00000105705.11532.76560384.574200.470102.555201.95250HepG2DDX3X
SUGP1ENSG00000105705.11519.01290383.784400.435402.186501.36610HepG2EEF2
SUGP1ENSG00000105705.11485.78450350.907500.469102.376501.78290HepG2EIF4A3
SUGP1ENSG00000105705.11493.68120341.757800.530502.423001.77790HepG2EIF4B
SUGP1ENSG00000105705.11568.71140354.209600.683005.023204.11210HepG2FXR1
SUGP1ENSG00000105705.11540.30210328.497900.717804.715503.85670HepG2G3BP1
SUGP1ENSG00000105705.11391.77240277.348300.498202.614801.74700HepG2GEMIN5
SUGP1ENSG00000105705.11390.81880291.383500.423502.108101.53580HepG2HNRNPA1
SUGP1ENSG00000105705.11425.59670321.957400.402502.718302.11700HepG2HNRNPU
SUGP1ENSG00000105705.11476.06850333.881200.511702.845102.16200HepG2IGF2BP2
SUGP1ENSG00000105705.11448.49790328.870700.447503.719502.88220HepG2ILF2
SUGP1ENSG00000105705.11476.40170354.334000.427002.105701.53030HepG2MAGOH
SUGP1ENSG00000105705.11539.24890356.291400.597803.557202.84960HepG2MATR3
SUGP1ENSG00000105705.11485.75320629.92860-0.375002.165301.50140HepG2NSUN2
SUGP1ENSG00000105705.11490.83440358.507000.453103.623502.94850HepG2PCBP1
SUGP1ENSG00000105705.11634.52160436.746100.538804.548403.80570HepG2PUF60
SUGP1ENSG00000105705.11582.15300463.642700.328302.802902.20690HepG2PUM1
SUGP1ENSG00000105705.11578.13480463.293200.319402.067501.48260HepG2PUM2
SUGP1ENSG00000105705.11626.71800405.984100.626306.585705.81120HepG2NELFE
SUGP1ENSG00000105705.11528.13250378.135100.481903.986903.26420HepG2RECQL
SUGP1ENSG00000105705.11523.10000303.150700.787007.290706.34950HepG2RPS19
SUGP1ENSG00000105705.11476.06640305.649500.639203.781302.84990HepG2RPS2
SUGP1ENSG00000105705.11377.94000264.409500.515302.282601.55440HepG2RPS3A
SUGP1ENSG00000105705.11364.17650286.723700.344901.969201.41050HepG2SAFB2
SUGP1ENSG00000105705.11536.08940379.789900.497204.224503.51840HepG2SF3B4
SUGP1ENSG00000105705.11439.99520334.379200.395902.933602.27330HepG2SMN1
SUGP1ENSG00000105705.11509.26410396.426300.361302.397601.94910HepG2SRSF1
SUGP1ENSG00000105705.11587.02950431.244000.444804.161003.42160HepG2SRSF5
SUGP1ENSG00000105705.11725.95210600.857300.272802.055601.59720HepG2SSB
SUGP1ENSG00000105705.11621.09720490.425400.340702.877402.24590HepG2SUCLG1
SUGP1ENSG00000105705.11333.66150541.27400-0.698005.937804.58740HepG2SUPT6H
SUGP1ENSG00000105705.11482.99140692.49900-0.519803.961303.11290HepG2TARDBP
SUGP1ENSG00000105705.11485.33860312.882800.633303.030802.51120HepG2TIAL1
SUGP1ENSG00000105705.11391.50310315.635700.310701.816101.34020HepG2TRIM56
SUGP1ENSG00000105705.11565.20120426.710900.405402.781701.90630HepG2TUFM
SUGP1ENSG00000105705.11259.59570182.151500.511002.109701.44820HepG2UCHL5
SUGP1ENSG00000105705.11511.67070303.558900.753104.921603.96300HepG2XRN2
SUGP1ENSG00000105705.11673.43910899.02200-0.416804.264603.58640K562AGGF1
SUGP1ENSG00000105705.11749.16730935.47860-0.320402.067101.50000K562AKAP8L
SUGP1ENSG00000105705.11952.17200727.247500.388702.824102.23070K562AQR
SUGP1ENSG00000105705.111328.958301022.008300.378802.763402.11280K562DDX47
SUGP1ENSG00000105705.11679.25880436.321700.638503.314802.20570K562EIF3A
SUGP1ENSG00000105705.11436.10210269.861300.692305.110404.04230K562EIF3G
SUGP1ENSG00000105705.11463.32500352.342400.394902.229301.48950K562EIF4A3
SUGP1ENSG00000105705.11417.92200317.295600.397302.534601.44600K562EIF4B
SUGP1ENSG00000105705.11536.12410366.419900.549004.823604.05450K562FXR1
SUGP1ENSG00000105705.11548.00120779.53240-0.508402.831101.93700K562NAA15
SUGP1ENSG00000105705.111202.84410942.248900.352202.255601.50540K562PCBP3
SUGP1ENSG00000105705.11942.55060722.713300.383003.193202.32940K562POLR2G
SUGP1ENSG00000105705.11493.35770364.586500.436302.206201.53260K562PRPF8
SUGP1ENSG00000105705.11461.86810927.69870-1.0062012.9934011.86300K562PUS1
SUGP1ENSG00000105705.11624.21550903.93530-0.534205.830604.99670K562RBM15
SUGP1ENSG00000105705.11484.57090338.067000.519302.874802.01430K562RBM22
SUGP1ENSG00000105705.11334.98830224.234400.579003.859702.84480K562SF3B4
SUGP1ENSG00000105705.11491.62680345.810400.507503.568002.77200K562SRSF1
SUGP1ENSG00000105705.11651.61310461.255400.498303.699702.45600K562SRSF4
SUGP1ENSG00000105705.11447.34060337.552300.406202.433601.67100K562TIA1
SUGP1ENSG00000105705.11508.84290373.535300.445902.367401.43270K562UCHL5
SUGP1ENSG00000105705.111039.85070817.766900.346504.044003.03410K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SUGP1 is not available on ENCORE database.





12 RBPs can affect the splicing of SUGP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESUGP1ENSG00000105705.11chr19-194145321941465619414159194142571941665719416885-0.094000.000120.01536excludedK562HNRNPUL1
A3SSSUGP1ENSG00000105705.11chr19-1941307319413252194130731941319719414156194142570.088000.000050.03851longerK562SBDS
A3SSSUGP1ENSG00000105705.11chr19-1942090519421045194209051942100919427230194274020.056000.002520.01580longerK562AQR
A3SSSUGP1ENSG00000105705.11chr19-1941307319413252194130731941319719414156194143000.061000.014630.07318longerK562AQR
A3SSSUGP1ENSG00000105705.11chr19-1938854219388729193885421938868819389498193896050.072000.000030.00026longerK562AQR
A3SSSUGP1ENSG00000105705.11chr19-1941453219414852194145321941465619416657194168850.206000.001070.00736longerK562AQR
A3SSSUGP1ENSG00000105705.11chr19-194145321941485219414532194147211941665719416885-0.250000.013330.06765shorterK562AQR
MXESUGP1ENSG00000105705.11chr19-19416657194168851942090519421009194145321941465619427230194274020.217000.005490.058361includedK562DROSHA
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.132000.000030.001332includedK562DROSHA
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.171000.000100.028142includedHepG2IGF2BP1
MXESUGP1ENSG00000105705.11chr19-19420905194210091942723019427436194166571941688519431271194313180.096000.014260.084091includedK562AQR
MXESUGP1ENSG00000105705.11chr19-19420905194210091942723019427461194166571941688519431271194313180.102000.010150.064111includedK562AQR
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.238000.000100.012142includedHepG2NOLC1
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.143000.002420.084092includedHepG2DROSHA
MXESUGP1ENSG00000105705.11chr19-19414532194146441941665719416885194141561941425719420905194210090.235000.000980.032211includedK562SBDS
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.127000.000870.042822includedK562SAFB
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.141000.002390.040182includedK562HNRNPC
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.131000.000360.054852includedK562EIF3G
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.179000.002800.088622includedHepG2HNRNPL
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.101000.006480.079242includedK562SF3B4
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.104000.002770.083292includedK562AKAP8L
MXESUGP1ENSG00000105705.11chr19-1942090519421009194272301942740219416657194168851943127119431318-0.120000.000240.009122includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SUGP1 is not avaliable on ENCORE database.