SUGP1

General Information

Gene Name : SUGP1
Gene ID : ENSG00000105705.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SUGP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SUGP1	ENSG00000105705.15	12.53	25.68	19.11	ENCSR000AEF
HepG2	SUGP1	ENSG00000105705.15	24.24	11.49	17.86	ENCSR985KAT
K562	SUGP1	ENSG00000105705.15	25.31	24.69	25.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SUGP1 is not avaliable on ENCORE database.

Proteins bound to RNA

SUGP1 RNA is bound by 20 proteins.

CanvasJS.com

eCLIP assay for SUGP1 is not avaliable on ENCORE database.

20 proteins are bound to SUGP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	19415136	19415227	-	intron-Distal	4.77094	13.41826	K562	LIN28B
chr19	19414477	19414560	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.45920	10.26986	HepG2	PRPF8
chr19	19414178	19414291	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.95716	9.18050	K562	BUD13
chr19	19416612	19416679	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.79490	8.72621	HepG2	PRPF8
chr19	19416614	19416746	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.06646	8.66150	HepG2	PPIG
chr19	19416615	19416728	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.61991	6.74842	K562	ZNF622
chr19	19431212	19431318	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.82938	6.40909	HepG2	NCBP2
chr19	19415116	19415228	-	intron-Distal	3.77212	6.18596	HepG2	LIN28B
chr19	19427183	19427262	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.83115	5.65342	K562	AQR
chr19	19420844	19420906	-	intron-Distal,intron-Proximal	4.08504	5.47926	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for SUGP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SUGP1 is not available on ENCORE database.
60 RBPs can affect the levels of SUGP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SUGP1 is not available on ENCORE database.

60 RBPs can affect the gene expression of SUGP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SUGP1	ENSG00000105705.11	461.86810	927.69870	-1.00620	12.99340	11.86300	K562	PUS1
SUGP1	ENSG00000105705.11	523.10000	303.15070	0.78700	7.29070	6.34950	HepG2	RPS19
SUGP1	ENSG00000105705.11	626.71800	405.98410	0.62630	6.58570	5.81120	HepG2	NELFE
SUGP1	ENSG00000105705.11	624.21550	903.93530	-0.53420	5.83060	4.99670	K562	RBM15
SUGP1	ENSG00000105705.11	333.66150	541.27400	-0.69800	5.93780	4.58740	HepG2	SUPT6H
SUGP1	ENSG00000105705.11	568.71140	354.20960	0.68300	5.02320	4.11210	HepG2	FXR1
SUGP1	ENSG00000105705.11	536.12410	366.41990	0.54900	4.82360	4.05450	K562	FXR1
SUGP1	ENSG00000105705.11	436.10210	269.86130	0.69230	5.11040	4.04230	K562	EIF3G
SUGP1	ENSG00000105705.11	511.67070	303.55890	0.75310	4.92160	3.96300	HepG2	XRN2
SUGP1	ENSG00000105705.11	540.30210	328.49790	0.71780	4.71550	3.85670	HepG2	G3BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 66 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SUGP1 is not available on ENCORE database.

12 RBPs can affect the splicing of SUGP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	SUGP1	ENSG00000105705.11	chr19	-	19388542	19388729			19388542	19388688	19389498	19389605	0.07200	0.00003	0.00026	longer	K562	AQR
MXE	SUGP1	ENSG00000105705.11	chr19	-	19420905	19421009	19427230	19427402	19416657	19416885	19431271	19431318	-0.13200	0.00003	0.00133	2included	K562	DROSHA
A3SS	SUGP1	ENSG00000105705.11	chr19	-	19413073	19413252			19413073	19413197	19414156	19414257	0.08800	0.00005	0.03851	longer	K562	SBDS
MXE	SUGP1	ENSG00000105705.11	chr19	-	19420905	19421009	19427230	19427402	19416657	19416885	19431271	19431318	-0.17100	0.00010	0.02814	2included	HepG2	IGF2BP1
MXE	SUGP1	ENSG00000105705.11	chr19	-	19420905	19421009	19427230	19427402	19416657	19416885	19431271	19431318	-0.23800	0.00010	0.01214	2included	HepG2	NOLC1
SE	SUGP1	ENSG00000105705.11	chr19	-	19414532	19414656			19414159	19414257	19416657	19416885	-0.09400	0.00012	0.01536	excluded	K562	HNRNPUL1
MXE	SUGP1	ENSG00000105705.11	chr19	-	19420905	19421009	19427230	19427402	19416657	19416885	19431271	19431318	-0.12000	0.00024	0.00912	2included	K562	HNRNPUL1
MXE	SUGP1	ENSG00000105705.11	chr19	-	19420905	19421009	19427230	19427402	19416657	19416885	19431271	19431318	-0.13100	0.00036	0.05485	2included	K562	EIF3G
MXE	SUGP1	ENSG00000105705.11	chr19	-	19420905	19421009	19427230	19427402	19416657	19416885	19431271	19431318	-0.12700	0.00087	0.04282	2included	K562	SAFB
MXE	SUGP1	ENSG00000105705.11	chr19	-	19414532	19414644	19416657	19416885	19414156	19414257	19420905	19421009	0.23500	0.00098	0.03221	1included	K562	SBDS

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SUGP1

General Information

Functions

Localization

Domains (AlphaFold: SUGP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SUGP1 is not avaliable on ENCORE database.

20 proteins are bound to SUGP1 RNA:

eCLIP assay for SUGP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SUGP1 is not available on ENCORE database.

60 RBPs can affect the gene expression of SUGP1 :

The Knockdown/knockout RNA-Seq assay for SUGP1 is not available on ENCORE database.

12 RBPs can affect the splicing of SUGP1 :

The Knockdown/knockout RNA-Seq assay for SUGP1 is not avaliable on ENCORE database.