S100A4

General Information

Gene Name       : S100A4
Gene ID             : ENSG00000196154.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: S100A4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878S100A4ENSG00000196154.1116.5619.3217.94ENCSR000AEF
HepG2S100A4ENSG00000196154.119.408.328.86ENCSR985KAT
K562S100A4ENSG00000196154.114.953.794.37ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for S100A4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • S100A4 RNA is bound by 1 proteins.  







eCLIP assay for S100A4 is not avaliable on ENCORE database.





1 proteins are bound to S100A4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1153516111153516164-3'-UTR,intron-Distal4.691476.48592K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for S100A4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for S100A4 is not available on ENCORE database.

  • 85 RBPs can affect the levels of S100A4.  








The Knockdown/knockout RNA-Seq assay for S100A4 is not available on ENCORE database.





85 RBPs can affect the gene expression of S100A4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
S100A4ENSG00000196154.7163.6263052.279101.6460011.7319010.66540HepG2ACO1
S100A4ENSG00000196154.758.8363022.187401.406903.299402.16870HepG2AKAP8
S100A4ENSG00000196154.7157.0662047.780201.716807.723806.44330HepG2ASCC1
S100A4ENSG00000196154.754.06740117.81360-1.123703.997602.93470HepG2BCLAF1
S100A4ENSG00000196154.74.3113044.70680-3.374307.457206.53280HepG2BOP1
S100A4ENSG00000196154.724.1918052.24450-1.110802.483201.84610HepG2CKAP4
S100A4ENSG00000196154.729.6247083.75380-1.499404.875903.50040HepG2CSTF2
S100A4ENSG00000196154.749.15290175.32870-1.834705.994004.96120HepG2DAZAP1
S100A4ENSG00000196154.742.6196082.49690-0.952802.616801.95400HepG2DDX21
S100A4ENSG00000196154.747.57590124.73210-1.390504.486702.90000HepG2DDX27
S100A4ENSG00000196154.743.08820100.99160-1.228904.425702.68680HepG2DDX28
S100A4ENSG00000196154.713.6172043.75990-1.684203.417901.97730HepG2DDX47
S100A4ENSG00000196154.7297.23260133.301601.156807.101005.93160HepG2DDX55
S100A4ENSG00000196154.7454.5774047.533803.2574046.7132044.63110HepG2DDX6
S100A4ENSG00000196154.7133.3322075.891500.812902.646001.56710HepG2AGO1
S100A4ENSG00000196154.714.7347050.46900-1.776203.935003.17690HepG2EIF4A3
S100A4ENSG00000196154.773.74540173.05000-1.230603.250502.35760HepG2EIF4G1
S100A4ENSG00000196154.755.03540165.75690-1.590605.491504.36510HepG2EIF4G2
S100A4ENSG00000196154.756.99410209.20220-1.8760016.0512014.79990HepG2ETF1
S100A4ENSG00000196154.786.6985040.298301.105202.522401.78350HepG2FIP1L1
S100A4ENSG00000196154.755.25010110.95660-1.005903.492002.07530HepG2FKBP4
S100A4ENSG00000196154.76.4306041.11640-2.676703.816802.62150HepG2FTO
S100A4ENSG00000196154.7108.9997050.948601.097103.563602.78480HepG2FXR1
S100A4ENSG00000196154.79.3362046.51600-2.316804.773003.94750HepG2GPKOW
S100A4ENSG00000196154.711.7978063.26130-2.422806.583205.55100HepG2HNRNPC
S100A4ENSG00000196154.757.27410177.78490-1.634204.547903.65480HepG2HNRNPF
S100A4ENSG00000196154.7163.0604047.876501.767909.838108.58890HepG2HNRNPK
S100A4ENSG00000196154.713.5174044.39170-1.715503.140702.47520HepG2HNRNPLL
S100A4ENSG00000196154.749.11640175.07360-1.833705.318804.34740HepG2IGF2BP1
S100A4ENSG00000196154.78.2458045.08660-2.451003.369402.28300HepG2IGF2BP3
S100A4ENSG00000196154.723.3353064.19050-1.459804.594403.66970HepG2ILF2
S100A4ENSG00000196154.722.9447056.47080-1.299303.010301.75840HepG2KHDRBS1
S100A4ENSG00000196154.724.2705051.24730-1.078301.828201.31020HepG2MATR3
S100A4ENSG00000196154.716.2793045.28890-1.476102.448401.54050HepG2MTPAP
S100A4ENSG00000196154.710.7179039.36670-1.877002.900602.13430HepG2NSUN2
S100A4ENSG00000196154.7140.6925054.194301.376202.663001.79580HepG2PABPC1
S100A4ENSG00000196154.779.66490176.23480-1.145503.665003.00300HepG2PUM1
S100A4ENSG00000196154.796.74530176.08790-0.864002.501501.86330HepG2PUM2
S100A4ENSG00000196154.719.4890053.24630-1.450003.426902.75890HepG2PUS1
S100A4ENSG00000196154.7697.3134069.569103.3252044.8191042.38030HepG2RAVER1
S100A4ENSG00000196154.779.7347040.125200.990602.690101.84290HepG2RBM15
S100A4ENSG00000196154.775.6139043.252400.805801.777201.32320HepG2NELFE
S100A4ENSG00000196154.722.9942068.34360-1.571504.292003.12040HepG2RPS10
S100A4ENSG00000196154.746.3643016.302201.507903.258002.52550HepG2SF3A3
S100A4ENSG00000196154.72.2799043.93500-4.268308.820507.62970HepG2SF3B1
S100A4ENSG00000196154.783.55650159.21830-0.930202.580601.89960HepG2SLBP
S100A4ENSG00000196154.7121.6343065.252800.898303.059802.38770HepG2SMN1
S100A4ENSG00000196154.794.0336047.285600.991702.380901.46050HepG2SRSF3
S100A4ENSG00000196154.7245.28430163.925800.581303.373202.69410HepG2SRSF5
S100A4ENSG00000196154.759.60070174.64620-1.551004.227203.39370HepG2SRSF7
S100A4ENSG00000196154.7107.4527034.362101.644708.327107.46160HepG2SRSF9
S100A4ENSG00000196154.7104.37350171.49330-0.716403.152902.61370HepG2SSB
S100A4ENSG00000196154.7329.54160132.703501.312209.207308.09300HepG2SUPV3L1
S100A4ENSG00000196154.7114.8080037.972001.596102.314201.79340HepG2TAF15
S100A4ENSG00000196154.710.5147043.28650-2.041503.964403.11570HepG2TARDBP
S100A4ENSG00000196154.724.8310069.85940-1.492303.582201.91610HepG2TRA2A
S100A4ENSG00000196154.7142.7519024.854202.521807.234505.56100HepG2U2AF2
S100A4ENSG00000196154.761.74950171.73100-1.475604.705603.59620HepG2UBE2L3
S100A4ENSG00000196154.741.3874078.39460-0.921602.381301.67690HepG2UCHL5
S100A4ENSG00000196154.736.2014014.457701.324102.294601.64870HepG2UPF1
S100A4ENSG00000196154.765.35630121.52570-0.894902.486101.53840HepG2UPF2
S100A4ENSG00000196154.743.0508013.958101.624803.149802.51790HepG2UTP3
S100A4ENSG00000196154.775.84140130.63190-0.784402.252201.59270HepG2XRN2
S100A4ENSG00000196154.716.1168049.11480-1.607603.739002.97770HepG2ZC3H8
S100A4ENSG00000196154.746.5259015.900501.548903.558602.95960HepG2ZNF622
S100A4ENSG00000196154.730.2964069.51090-1.198103.158501.76520HepG2ZRANB2
S100A4ENSG00000196154.780.7758022.367701.852406.716205.66500K562AKAP8L
S100A4ENSG00000196154.754.1718023.467901.206802.751001.84080K562ATP5C1
S100A4ENSG00000196154.7168.8144091.863500.877804.263901.81580K562AUH
S100A4ENSG00000196154.737.0249075.16630-1.021602.876501.53000K562DDX27
S100A4ENSG00000196154.7121.8387063.525700.939502.906901.59100K562EEF2
S100A4ENSG00000196154.7124.2659049.677101.322704.858002.03700K562AGO1
S100A4ENSG00000196154.731.3582061.99770-0.983402.207801.47150K562EIF4A3
S100A4ENSG00000196154.7405.32210106.801701.9240028.6707025.96280K562EIF4G2
S100A4ENSG00000196154.713.6359064.47550-2.241307.077406.17040K562FXR1
S100A4ENSG00000196154.761.00740108.38800-0.829102.752401.32540K562G3BP1
S100A4ENSG00000196154.756.44930106.75020-0.919202.826602.06350K562GRSF1
S100A4ENSG00000196154.753.4742091.81140-0.779802.321601.50240K562HNRNPU
S100A4ENSG00000196154.757.02470115.33930-1.016204.216902.67760K562IGF2BP3
S100A4ENSG00000196154.778.5275023.740101.725805.557504.29740K562KIF1C
S100A4ENSG00000196154.746.14590119.14440-1.368406.782205.43810K562MAGOH
S100A4ENSG00000196154.762.12320118.89470-0.936503.685402.60760K562MATR3
S100A4ENSG00000196154.763.1774018.640701.760904.227703.06860K562NAA15
S100A4ENSG00000196154.757.7221023.614501.289402.250901.37600K562PABPN1
S100A4ENSG00000196154.756.72820105.99940-0.901902.776401.79470K562PCBP2
S100A4ENSG00000196154.74.4477024.51420-2.462503.109702.22670K562PCBP3
S100A4ENSG00000196154.720.24750115.76010-2.5153015.4094013.90740K562PTBP1
S100A4ENSG00000196154.751.6897022.187401.220002.093101.60820K562PUS1
S100A4ENSG00000196154.749.8733021.614301.206202.384101.82690K562RBM15
S100A4ENSG00000196154.773.1667027.817601.395104.113601.88760K562SAFB2
S100A4ENSG00000196154.717.8400051.10710-1.518403.173901.49040K562SERBP1
S100A4ENSG00000196154.718.84670113.48940-2.5902013.5533011.98900K562SRSF1
S100A4ENSG00000196154.768.1506033.414101.028202.250801.41340K562TIAL1
S100A4ENSG00000196154.726.2960061.20200-1.218702.826201.79460K562UCHL5
S100A4ENSG00000196154.793.7995048.815700.942102.870102.13830K562UPF1
S100A4ENSG00000196154.782.0257043.430300.917302.688001.85280K562WDR43
S100A4ENSG00000196154.7157.6234087.351300.851503.920202.86070K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for S100A4 is not available on ENCORE database.





1 RBPs can affect the splicing of S100A4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SES100A4ENSG00000196154.7chr1-1535202421535203221535171291535172851535208201535209100.272000.000140.03679includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for S100A4 is not avaliable on ENCORE database.