RRP7B

General Information

Gene Name       : RRP7B
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RRP7B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RRP7B is not avaliable on ENCORE database.



Proteins bound to RNA
  • RRP7B RNA is bound by 18 proteins.  







eCLIP assay for RRP7B is not avaliable on ENCORE database.





18 proteins are bound to RRP7B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224297213842972203-intron-Distal,intron-Proximal4.448845.29549HepG2EFTUD2
chr224297388342973970-intron-Distal,intron-Proximal3.149844.34383HepG2GRWD1
chr224296128742961333-intron-Distal3.291575.56482K562SRSF7
chr224296579342965904-intron-Distal4.143559.89371K562HNRNPL
chr224297384742973869-intron-Distal,intron-Proximal3.903394.96634HepG2PPIG
chr224297189342971947-intron-Distal,intron-Proximal3.522744.83899HepG2PRPF8
chr224297046142970539-intron-Distal4.015356.96499HepG2XPO5
chr224297054642970603-intron-Distal,intron-Proximal3.144474.24993HepG2PPIG
chr224297211842972203-intron-Distal,intron-Proximal3.700763.96535HepG2AQR
chr224297064542970752-intron-Distal,intron-Proximal5.327429.46752K562ZNF622
chr224296128742961300-intron-Distal8.21935400.00000K562LARP7
chr224297306942973113-intron-Distal,intron-Proximal4.408864.45977HepG2U2AF2
chr224297064842970751-intron-Distal,intron-Proximal3.8554316.65240HepG2PPIG
chr224297068842970742-intron-Distal,intron-Proximal4.381554.78571K562UCHL5
chr224296130442961337-intron-Distal8.44027400.00000K562LARP7
chr224297790542978015-intron-Distal,intron-Proximal3.113203.68171HepG2SRSF1
chr224297615042976198-intron-Distal,intron-Proximal3.270935.69108HepG2RBM22
chr224297075242970823-intron-Distal4.041146.81238K562ZNF622
chr224297213442972219-intron-Distal,intron-Proximal5.6741114.08765HepG2SF3B4
chr224295245142952554-intron-Distal5.181376.22530K562AQR
chr224297393642973971-intron-Distal,intron-Proximal3.458617.36645HepG2PPIG
chr224296585042965919-intron-Distal3.321797.56692HepG2HNRNPL
chr224297074942970823-intron-Distal5.3991411.88971HepG2GRWD1
chr224297074242970825-intron-Distal,intron-Proximal3.764008.06634K562UCHL5
chr224296116842961212-intron-Distal7.0736345.26036K562LARP7
chr224297075142970821-intron-Distal3.4765811.11819HepG2PPIG
chr224296581542965850-intron-Distal3.373077.49442HepG2HNRNPL
chr224296121242961264-intron-Distal7.4777662.40906K562LARP7
chr224297614242976243-intron-Distal,intron-Proximal4.100034.16174HepG2PRPF8
chr224297195142972103-intron-Distal3.2465510.58433HepG2PPIG
chr224296118342961186-intron-Distal5.962818.50449HepG2LARP7
chr224296578342965815-intron-Distal3.762648.44070HepG2HNRNPL
chr224297190942972053-intron-Distal,intron-Proximal4.844365.70640HepG2BCLAF1
chr224297381242973885-intron-Distal,intron-Proximal5.1026811.43008HepG2PRPF8
chr224296127542961337-intron-Distal9.6322188.76107HepG2LARP7
chr224297214442972223-intron-Distal,intron-Proximal3.002333.02792HepG2RBFOX2
chr224297304742973106-intron-Distal,intron-Proximal4.0088810.42618HepG2PPIG
chr224297065942970749-intron-Distal,intron-Proximal3.6566411.08187HepG2GRWD1
chr224296582742965906-intron-Distal3.064938.73412K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RRP7B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RRP7B is not available on ENCORE database.

  • 74 RBPs can affect the levels of RRP7B.  








The Knockdown/knockout RNA-Seq assay for RRP7B is not available on ENCORE database.





74 RBPs can affect the gene expression of RRP7B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RRP7BENSG00000182841.8183.17800281.95900-0.622204.211803.49140HepG2ACO1
RRP7BENSG00000182841.8127.31550266.41600-1.065305.855605.11490HepG2AKAP1
RRP7BENSG00000182841.8185.95150283.30140-0.607403.967203.06120HepG2AKAP8L
RRP7BENSG00000182841.8275.58200381.44780-0.469003.356902.61340HepG2AUH
RRP7BENSG00000182841.884.41190188.03860-1.155506.572405.45020HepG2CALR
RRP7BENSG00000182841.8113.70200209.43110-0.881204.190303.25060HepG2CIRBP
RRP7BENSG00000182841.8198.99840281.91900-0.502503.048702.35760HepG2CKAP4
RRP7BENSG00000182841.8261.50100436.25010-0.738303.781602.88140HepG2CNOT7
RRP7BENSG00000182841.8130.10110209.80820-0.689403.140402.42120HepG2DDX21
RRP7BENSG00000182841.8108.45420255.20930-1.234608.166807.14330HepG2DDX3X
RRP7BENSG00000182841.8177.86850269.76390-0.600903.466402.72050HepG2DKC1
RRP7BENSG00000182841.8215.46510134.199200.683004.160003.39200HepG2DNAJC2
RRP7BENSG00000182841.8142.61160231.30090-0.697702.509101.62800HepG2EEF2
RRP7BENSG00000182841.8331.31810437.99680-0.402702.611602.02440HepG2ETF1
RRP7BENSG00000182841.8199.18860275.54320-0.468102.265201.50970HepG2EWSR1
RRP7BENSG00000182841.8293.23740185.660500.659303.730202.82560HepG2FUBP3
RRP7BENSG00000182841.8333.62680231.415300.527702.559201.70530HepG2G3BP2
RRP7BENSG00000182841.8104.97490167.13640-0.671002.629301.75830HepG2GEMIN5
RRP7BENSG00000182841.8129.88130235.61720-0.859304.943103.57890HepG2GNB2L1
RRP7BENSG00000182841.8300.86920152.036200.984606.574505.54320HepG2HNRNPC
RRP7BENSG00000182841.8151.83000221.58210-0.545402.119801.51940HepG2IGF2BP2
RRP7BENSG00000182841.8221.76940425.30910-0.939506.133104.10220HepG2ILF3
RRP7BENSG00000182841.8165.05930242.36950-0.554202.469101.32890HepG2LIN28B
RRP7BENSG00000182841.8298.13580184.032400.695902.468701.32470HepG2NAA15
RRP7BENSG00000182841.8170.98630398.75690-1.221607.953006.40010HepG2PABPC1
RRP7BENSG00000182841.8311.70910229.639900.440702.530401.94320HepG2PCBP1
RRP7BENSG00000182841.8138.15050214.97440-0.637902.411901.43900HepG2PCBP2
RRP7BENSG00000182841.876.91900130.93150-0.767402.624401.83620HepG2PRPF8
RRP7BENSG00000182841.8214.02680298.37020-0.479302.206701.66640HepG2PUF60
RRP7BENSG00000182841.8239.93130316.74370-0.400702.256901.71000HepG2PUM1
RRP7BENSG00000182841.8213.54120287.19660-0.427502.357701.77780HepG2PUS1
RRP7BENSG00000182841.8355.35730253.062200.489702.808402.17940HepG2QKI
RRP7BENSG00000182841.8104.66230207.37650-0.986503.686202.87600HepG2RAVER1
RRP7BENSG00000182841.8191.62300366.07510-0.933908.428607.63910HepG2RBM22
RRP7BENSG00000182841.8367.55060242.208900.601604.322303.57490HepG2RECQL
RRP7BENSG00000182841.8128.45960203.85080-0.666202.405001.52410HepG2RPS10
RRP7BENSG00000182841.8124.86470182.70420-0.549102.032501.49850HepG2RPS19
RRP7BENSG00000182841.8159.36240256.72750-0.687903.431702.54080HepG2RPS2
RRP7BENSG00000182841.8275.43060438.13570-0.669703.742502.81220HepG2RPS3A
RRP7BENSG00000182841.881.70470129.51140-0.664602.042501.35670HepG2RRP9
RRP7BENSG00000182841.8184.73190134.497500.457801.848901.30520HepG2SAFB2
RRP7BENSG00000182841.8123.62980183.31390-0.568302.177201.33910HepG2SERBP1
RRP7BENSG00000182841.8198.06760284.51850-0.522502.159101.56250HepG2SF3A3
RRP7BENSG00000182841.8337.12000211.868400.670003.531302.43450HepG2SMNDC1
RRP7BENSG00000182841.8315.26150413.45230-0.391202.419501.94000HepG2SRFBP1
RRP7BENSG00000182841.8153.96290253.92890-0.721804.098503.55060HepG2SRSF1
RRP7BENSG00000182841.8211.95000294.60970-0.475102.523301.92110HepG2SRSF5
RRP7BENSG00000182841.8244.88330170.661200.520902.752302.05750HepG2SRSF7
RRP7BENSG00000182841.8287.24930358.94640-0.321501.795601.36060HepG2SSB
RRP7BENSG00000182841.8623.53290228.251001.4497027.0002025.48480HepG2TAF15
RRP7BENSG00000182841.8264.20070437.11360-0.726402.871401.78620HepG2TBRG4
RRP7BENSG00000182841.8355.97520209.721200.763206.028104.80090HepG2TIA1
RRP7BENSG00000182841.8224.89360148.067300.602902.058901.55890HepG2TRIM56
RRP7BENSG00000182841.8117.74240231.68870-0.976602.329201.74830HepG2U2AF1
RRP7BENSG00000182841.8186.4411099.838500.901004.129303.20160HepG2UCHL5
RRP7BENSG00000182841.8245.63170154.727800.666702.203901.31270HepG2UPF2
RRP7BENSG00000182841.8178.88130277.50930-0.633503.057102.49000HepG2ZNF622
RRP7BENSG00000182841.8271.95760398.35840-0.550703.440702.71040K562AKAP8L
RRP7BENSG00000182841.8405.77670570.16130-0.490702.419001.86410K562AQR
RRP7BENSG00000182841.8336.14490457.53130-0.444802.989201.75610K562CCDC124
RRP7BENSG00000182841.8575.95470452.290400.348602.606401.97170K562DDX47
RRP7BENSG00000182841.8245.99740153.836300.677103.774702.85530K562EIF3G
RRP7BENSG00000182841.8382.18590205.975500.891704.403703.36830K562EIF4A3
RRP7BENSG00000182841.8429.32090214.200601.003007.139506.22940K562FXR1
RRP7BENSG00000182841.853.66730111.40770-1.053703.554602.72960K562G3BP2
RRP7BENSG00000182841.8319.12150214.037600.576102.993602.37640K562HNRNPC
RRP7BENSG00000182841.8372.52250169.784801.1335011.639009.83200K562MAGOH
RRP7BENSG00000182841.8253.59300169.410300.581902.812601.88220K562MATR3
RRP7BENSG00000182841.8353.86440473.61200-0.420502.619901.73940K562MBNL1
RRP7BENSG00000182841.8271.37750191.935800.499602.145701.35890K562PSIP1
RRP7BENSG00000182841.8352.62850164.971301.095805.191204.30530K562PTBP1
RRP7BENSG00000182841.8289.91920384.93360-0.409002.329901.77810K562RBM15
RRP7BENSG00000182841.8226.66980158.080000.519802.316701.55260K562RBM22
RRP7BENSG00000182841.8273.55160166.379100.717203.125501.95710K562NELFE
RRP7BENSG00000182841.8265.38760161.749000.714203.769402.95000K562SRSF1
RRP7BENSG00000182841.8241.26740163.652800.559902.157301.52760K562TARDBP
RRP7BENSG00000182841.8231.55070155.034400.578602.586101.53490K562TRA2A
RRP7BENSG00000182841.8504.47560337.418500.580106.119704.91290K562WDR43
RRP7BENSG00000182841.8376.23140201.654400.899604.203302.15640K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RRP7B is not available on ENCORE database.





1 RBPs can affect the splicing of RRP7B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRRP7BENSG00000182841.8chr22-4297251742972681429725174297261542972986429731040.129000.000000.00001longerK562AQR
A3SSRRP7BENSG00000182841.8chr22-4297622242976409429762224297636542977934429780440.063000.017350.08453longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RRP7B is not avaliable on ENCORE database.