RP11-169F17.1

General Information

Gene Name       : RP11-169F17.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-169F17.1)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • RP11-169F17.1 RNA is bound by 22 proteins.  







eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.





22 proteins are bound to RP11-169F17.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr187082717370827224-3'-UTR,intron-Distal3.093915.42536K562KHSRP
chr187082841270828472-3'-UTR,intron-Distal4.632506.21813K562TIA1
chr187082687770827020-3'-UTR,intron-Distal,intron-Proximal3.0871912.16136K562KHSRP
chr187082746870827543-3'-UTR,intron-Distal3.039098.21744K562KHSRP
chr187082902070829081-3'-UTR,intron-Distal,intron-Proximal3.999788.11145K562KHSRP
chr187082741170827479-3'-UTR,intron-Distal3.219704.44982K562UPF1
chr187082881770828897-3'-UTR,intron-Distal3.7427512.12125K562KHSRP
chr187082722470827242-3'-UTR,intron-Distal3.923783.42844K562KHSRP
chr187082896170829010-3'-UTR,intron-Distal,intron-Proximal3.995593.71735K562TIA1
chr187082863870828741-3'-UTR,intron-Distal3.479745.39484K562FAM120A
chr187082740070827468-3'-UTR,intron-Distal3.4575810.17817K562KHSRP
chr187082896070829020-3'-UTR,intron-Distal,intron-Proximal4.5335912.14549K562KHSRP
chr187082200170822018-3'-UTR,intron-Distal3.959323.02234K562KHSRP
chr187082874670828817-3'-UTR,intron-Distal3.426418.75128K562KHSRP
chr187091925570919289-intron-Distal4.141258.98664K562KHSRP
chr187084762270847680-intron-Distal3.511703.68839K562KHSRP
chr187091670270916758-intron-Distal3.735693.45590K562GRWD1
chr187092042970920480-intron-Distal5.7880613.02559K562U2AF2
chr187090810270908203-intron-Distal4.017085.50753K562QKI
chr187086746570867533-intron-Distal4.166974.34615K562LIN28B
chr187088396770884032-intron-Distal3.921353.02234K562KHSRP
chr187091962470919658-intron-Distal5.217888.49499K562KHSRP
chr187084802470848081-intron-Distal4.430233.89294K562KHSRP
chr187091482270914957-intron-Distal4.3880526.73177K562QKI
chr187091759570917653-intron-Distal3.383283.46826K562U2AF1
chr187092217270922225-intron-Distal4.059073.97489K562TIA1
chr187090670470906791-intron-Distal5.1393417.17583K562TARDBP
chr187091968470919735-intron-Distal3.764615.17284K562TIA1
chr187091765170917721-intron-Distal4.6270822.97322K562RBM15
chr187091645770916551-intron-Distal3.900274.39680K562YWHAG
chr187085713070857200-intron-Distal3.300573.50009K562CSTF2T
chr187092048070920512-intron-Distal5.7467711.09834K562U2AF1
chr187091993370920008-intron-Distal3.6737411.70384K562KHSRP
chr187091903770919091-intron-Distal3.388319.04868K562KHSRP
chr187087335470873500-intron-Distal3.294274.17049K562TARDBP
chr187090237670902455-intron-Distal3.221204.43137K562KHDRBS1
chr187091732470917340-intron-Distal5.6597611.94084K562RBM15
chr187091974570919843-intron-Distal3.351493.86151K562SRSF1
chr187090496870905034-intron-Distal5.6714914.91666K562HNRNPL
chr187090000970900028-intron-Distal4.4218710.27049K562HNRNPL
chr187091668870916759-intron-Distal7.7422260.53307K562RBM15
chr187091717070917198-intron-Distal5.6626711.79327K562RBM15
chr187091476370914844-intron-Distal6.0649618.88769K562HNRNPL
chr187092231170922333-intron-Distal4.3982411.85698K562KHSRP
chr187091661370916671-intron-Distal5.8923015.61166K562RBM15
chr187084676770846910-intron-Distal3.885547.82071K562KHSRP
chr187091734070917364-intron-Distal5.7451612.86660K562RBM15
chr187091654770916581-intron-Distal5.246028.04908K562RBM15
chr187082378370823893-intron-Distal4.193515.02888K562KHSRP
chr187091909170919168-intron-Distal4.7525420.11051K562KHSRP
chr187092249370922598-intron-Distal4.3569213.02677K562QKI
chr187084783870847945-intron-Distal4.743015.41654K562KHSRP
chr187091496170915056-intron-Distal4.640084.30178K562PTBP1
chr187091645370916581-intron-Distal3.192895.50514K562GRWD1
chr187092061870920704-intron-Distal4.790476.41561K562TIA1
chr187091749270917520-intron-Distal,intron-Proximal4.636116.19943K562RBM15
chr187091492770914978-intron-Distal4.330585.60352K562HNRNPL
chr187089248870892570-intron-Distal5.4989610.78698K562TARDBP
chr187092002670920077-intron-Distal3.7530912.20105K562KHSRP
chr187085388870854053-intron-Distal3.733065.95946K562KHSRP
chr187090370070903795-intron-Distal4.506675.71021K562TARDBP
chr187092020370920238-intron-Distal4.294293.65740K562U2AF2
chr187091857770918618-intron-Distal3.878363.21228K562TIA1
chr187084939170849485-intron-Distal4.105027.69621K562KHSRP
chr187091916870919247-intron-Distal5.2530929.37048K562KHSRP
chr187092263170922684-intron-Distal3.935443.71735K562TIA1
chr187092048070920508-intron-Distal3.818004.66154K562U2AF2
chr187092019370920234-intron-Distal4.238304.97297K562TIA1
chr187091639070916598-intron-Distal3.1908618.04535K562ZNF622
chr187089995170900009-intron-Distal4.0222714.01675K562HNRNPL
chr187091959370919624-intron-Distal3.7289011.56901K562KHSRP
chr187091987770919948-intron-Distal5.4013613.43295K562QKI
chr187090754670907630-intron-Distal4.3005810.37908K562KHSRP
chr187091639170916446-intron-Distal3.352105.71803K562UCHL5
chr187084289670842968-intron-Distal3.250434.25660K562HNRNPL
chr187091694470916975-intron-Distal6.1236117.11665K562RBM15
chr187089248270892615-intron-Distal3.683444.44706K562EIF4G2
chr187092225670922311-intron-Distal3.8061910.59064K562KHSRP
chr187091638770916570-intron-Distal3.189619.94904K562XRCC6
chr187091644670916564-intron-Distal4.0204716.74892K562UCHL5
chr187091858770918605-intron-Distal3.067543.03131K562HNRNPL
chr187085676870856876-intron-Distal3.889674.94630K562QKI
chr187092296070923014-intron-Distal,intron-Proximal3.370684.25440K562TIA1
chr187092033670920381-intron-Distal4.642016.35380K562U2AF2
chr187092042870920480-intron-Distal6.1447015.78963K562U2AF1
chr187084926070849357-intron-Distal3.600603.68839K562KHSRP
chr187089407270894165-intron-Distal5.303529.71026K562TARDBP
chr187092288470922906-intron-Distal3.499785.32884K562KHSRP
chr187091653370916639-intron-Distal3.212913.30843K562SLTM
chr187091661070916695-intron-Distal3.869574.15508K562YWHAG
chr187092263670922705-intron-Distal3.049459.39316K562KHSRP
chr187091757470917651-intron-Distal5.2334419.39226K562RBM15
chr187091668370916754-intron-Distal3.7317710.80378K562UCHL5
chr187091644270916543-intron-Distal6.3119539.83372K562RBM15
chr187091945870919534-intron-Distal4.9064023.80502K562TARDBP
chr187084085270840946-intron-Distal5.253967.26804K562TARDBP
chr187091415270914226-intron-Distal3.775068.16945K562TARDBP
chr187091660270916694-intron-Distal3.152693.85473K562GRWD1
chr187092300570923024-intron-Distal,intron-Proximal3.130815.74374K562KHSRP
chr187084810070848183-intron-Distal4.561213.66668K562KHSRP
chr187087870470878809-intron-Distal4.3096210.68324K562PTBP1
chr187091980970919862-intron-Distal3.034243.28108K562U2AF2
chr187092216770922247-intron-Distal3.2490812.16136K562KHSRP
chr187090763670907675-intron-Distal3.068463.38150K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-169F17.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-169F17.1 is not available on ENCORE database.

  • 56 RBPs can affect the levels of RP11-169F17.1.  








The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not available on ENCORE database.





56 RBPs can affect the gene expression of RP11-169F17.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-169F17.1ENSG00000263711.1596.49840787.26860-0.400302.863301.65940K562AARS
RP11-169F17.1ENSG00000263711.11320.534202223.55400-0.7517021.3751019.91110K562AGGF1
RP11-169F17.1ENSG00000263711.12023.548702443.17100-0.271902.298101.41440K562AKAP8
RP11-169F17.1ENSG00000263711.11508.982602313.66480-0.616608.971307.72000K562AKAP8L
RP11-169F17.1ENSG00000263711.11041.765401649.76000-0.663209.277706.92670K562APOBEC3C
RP11-169F17.1ENSG00000263711.11727.083102427.50820-0.491108.754707.00490K562ATP5C1
RP11-169F17.1ENSG00000263711.11028.628101310.36700-0.349202.722501.45360K562CIRBP
RP11-169F17.1ENSG00000263711.11133.83020780.398600.538804.556603.55140K562CPSF6
RP11-169F17.1ENSG00000263711.1480.98230612.92210-0.349702.386901.41500K562CSTF2
RP11-169F17.1ENSG00000263711.12071.494902608.83410-0.332702.990101.46420K562DDX19B
RP11-169F17.1ENSG00000263711.1779.624501482.65070-0.9273011.9150010.66620K562DDX47
RP11-169F17.1ENSG00000263711.11597.134402489.94480-0.6406014.9354012.56720K562DKC1
RP11-169F17.1ENSG00000263711.1396.41560716.56580-0.854108.970807.24250K562EFTUD2
RP11-169F17.1ENSG00000263711.11275.88630903.360400.498007.046205.97510K562EIF2S2
RP11-169F17.1ENSG00000263711.1344.66350600.28820-0.800504.402803.10600K562EIF3A
RP11-169F17.1ENSG00000263711.1507.91680767.28990-0.595204.176902.87370K562EIF3D
RP11-169F17.1ENSG00000263711.1513.73520733.74010-0.514205.419604.31940K562EIF3G
RP11-169F17.1ENSG00000263711.1667.81190819.78070-0.295802.363601.31980K562EIF4B
RP11-169F17.1ENSG00000263711.11031.28280784.979200.393603.072501.38020K562FASTKD2
RP11-169F17.1ENSG00000263711.1426.76620904.14930-1.0831016.1627013.93530K562FIP1L1
RP11-169F17.1ENSG00000263711.1478.55050946.70840-0.9842019.4186017.93060K562FXR1
RP11-169F17.1ENSG00000263711.11201.06390991.832300.276002.473401.39970K562GLRX3
RP11-169F17.1ENSG00000263711.1942.189101203.80760-0.353502.558501.82940K562GRSF1
RP11-169F17.1ENSG00000263711.1969.23700743.707000.382002.357901.50220K562HNRNPM
RP11-169F17.1ENSG00000263711.1558.368501034.71820-0.8899016.5669014.49840K562HNRNPU
RP11-169F17.1ENSG00000263711.11812.475401225.790800.564106.556605.34620K562HSPD1
RP11-169F17.1ENSG00000263711.1388.45140595.87950-0.617304.811302.86100K562KHDRBS1
RP11-169F17.1ENSG00000263711.1817.990101284.92820-0.651508.916207.36150K562MAGOH
RP11-169F17.1ENSG00000263711.1423.913101282.34800-1.5969043.3863040.08710K562MATR3
RP11-169F17.1ENSG00000263711.12166.186702750.79310-0.344704.061902.92550K562MBNL1
RP11-169F17.1ENSG00000263711.1558.81310727.25930-0.380102.283601.48930K562METAP2
RP11-169F17.1ENSG00000263711.11453.479901928.09320-0.407702.594901.74570K562NAA15
RP11-169F17.1ENSG00000263711.1505.22680705.89170-0.482503.090301.70190K562NONO
RP11-169F17.1ENSG00000263711.1662.577201143.29970-0.7870010.826708.81510K562PCBP2
RP11-169F17.1ENSG00000263711.1309.48340697.29940-1.1719014.3820012.65990K562PRPF8
RP11-169F17.1ENSG00000263711.1396.965001248.37520-1.6530046.8055044.24430K562PTBP1
RP11-169F17.1ENSG00000263711.11179.832302039.95100-0.7900012.3149010.58390K562PUF60
RP11-169F17.1ENSG00000263711.11732.004502235.71050-0.368304.999204.22360K562RBM15
RP11-169F17.1ENSG00000263711.11642.687801141.614900.524906.370103.98890K562RBM17
RP11-169F17.1ENSG00000263711.1755.691401197.13800-0.663708.015906.48780K562RBM22
RP11-169F17.1ENSG00000263711.1975.578801259.77400-0.368802.733101.64770K562NELFE
RP11-169F17.1ENSG00000263711.1372.08940710.32510-0.932808.651607.19240K562RPS19
RP11-169F17.1ENSG00000263711.11027.133901476.54300-0.523602.268401.37240K562RPS3
RP11-169F17.1ENSG00000263711.1585.95020776.00330-0.405302.968101.84770K562SAFB
RP11-169F17.1ENSG00000263711.12013.955901120.888800.845303.411002.03760K562SF1
RP11-169F17.1ENSG00000263711.1869.691901143.31710-0.394604.290703.29100K562SF3A3
RP11-169F17.1ENSG00000263711.1506.07620708.75290-0.485902.993401.98070K562SF3B1
RP11-169F17.1ENSG00000263711.1640.487601039.20250-0.6982010.215108.52580K562SF3B4
RP11-169F17.1ENSG00000263711.1936.827701171.36270-0.322303.782402.70700K562SRPK2
RP11-169F17.1ENSG00000263711.1889.000001223.80430-0.461104.736903.81600K562SRSF1
RP11-169F17.1ENSG00000263711.11183.86430756.846100.645303.717602.20490K562SSB
RP11-169F17.1ENSG00000263711.1603.41280873.62510-0.533905.200904.06670K562SYNCRIP
RP11-169F17.1ENSG00000263711.1902.928901238.61200-0.456003.956003.10270K562TARDBP
RP11-169F17.1ENSG00000263711.1957.505901290.30050-0.430402.923101.68320K562UTP3
RP11-169F17.1ENSG00000263711.1788.850601093.13190-0.470607.040905.74920K562WDR43
RP11-169F17.1ENSG00000263711.1533.04680727.59190-0.448902.941901.68420K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not available on ENCORE database.





11 RBPs can affect the splicing of RP11-169F17.1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842708678877086802470923047709231530.077000.000710.01583includedK562SF3B4
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842708678877086802470923047709231530.093000.000080.04862includedK562TIA1
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842708678877086802470923047709231530.633000.000000.00000includedK562MATR3
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842708678877086802470923047709231530.054000.000410.08558includedK562WDR43
SERP11-169F17.1ENSG00000263711.1chr18-708678877086802470829058708292087092304770923153-0.089000.009950.08092excludedK562AQR
SERP11-169F17.1ENSG00000263711.1chr18-708678877086802470829058708292087092304770923153-0.067000.001380.02216excludedK562PUS1
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842709175277091793070923047709231530.280000.000180.04163includedK562MTPAP
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842709175277091793070923047709231530.257000.000720.05018includedK562HNRNPL
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842708678877086802470923047709231530.058000.000010.00791includedK562PPIL4
SERP11-169F17.1ENSG00000263711.1chr18-7084007270840197708290797082920870923047709231530.469000.002320.08424includedK562HNRNPK
SERP11-169F17.1ENSG00000263711.1chr18-7091976070919842708678877086802470923047709231530.250000.000000.00011includedK562PTBP1
RIRP11-169F17.1ENSG00000263711.1chr18-708212927082317070821292708213067082305470823170-0.127000.009070.04931excludedK562AQR
MXERP11-169F17.1ENSG00000263711.1chr18-70917851709179307091976570919842709175277091756770923047709231530.407000.000340.034831includedK562HNRNPL
MXERP11-169F17.1ENSG00000263711.1chr18-7084007270840197708678877086802470837081708372707092304770923153-0.085000.006560.045042includedK562AQR
MXERP11-169F17.1ENSG00000263711.1chr18-70867887708680247091976070919842708400727084019770923047709231530.086000.000330.014251includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-169F17.1 is not avaliable on ENCORE database.