RER1

General Information

Gene Name : RER1
Gene ID : ENSG00000157916.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RER1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RER1	ENSG00000157916.19	119.59	116.97	118.28	ENCSR000AEF
HepG2	RER1	ENSG00000157916.19	119.65	106.10	112.88	ENCSR985KAT
K562	RER1	ENSG00000157916.19	216.31	217.06	216.69	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RER1 is not avaliable on ENCORE database.

Proteins bound to RNA

RER1 RNA is bound by 48 proteins.

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eCLIP assay for RER1 is not avaliable on ENCORE database.

48 proteins are bound to RER1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	2323329	2323402	+	5'-UTR,intron-Proximal	4.73586	80.37841	HepG2	DDX3X
chr1	2333021	2333081	+	intron-Distal	6.55366	56.23916	K562	ILF3
chr1	2332826	2332921	+	intron-Distal	6.75600	50.97391	HepG2	PCBP2
chr1	2332658	2332797	+	intron-Distal	8.30490	50.71191	HepG2	PCBP2
chr1	2332923	2333026	+	intron-Distal	6.11015	39.58846	K562	CSTF2T
chr1	2323327	2323372	+	5'-UTR	4.75073	37.38516	K562	DDX3X
chr1	2333142	2333243	+	intron-Distal	5.39107	36.03690	K562	CSTF2T
chr1	2323282	2323329	+	5'-UTR	4.35318	35.15892	HepG2	DDX3X
chr1	2323372	2323398	+	5'-UTR,intron-Proximal	5.04143	34.53180	K562	DDX3X
chr1	2323286	2323373	+	5'-UTR	4.43611	32.83482	K562	GEMIN5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 217 entries

eCLIP assay for RER1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RER1 is not available on ENCORE database.
44 RBPs can affect the levels of RER1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RER1 is not available on ENCORE database.

44 RBPs can affect the gene expression of RER1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RER1	ENSG00000157916.14	1287.31180	786.30230	0.71110	9.03050	8.02720	HepG2	BOP1
RER1	ENSG00000157916.14	3333.58550	2498.62080	0.41580	8.48150	7.42150	K562	DDX47
RER1	ENSG00000157916.14	2828.16180	1947.81040	0.53790	8.41320	7.18730	K562	SRSF1
RER1	ENSG00000157916.14	2586.36880	1921.08210	0.42890	7.21940	6.30470	K562	FXR1
RER1	ENSG00000157916.14	1605.67120	1236.28710	0.37710	6.71060	5.95570	HepG2	ZNF622
RER1	ENSG00000157916.14	877.76860	1395.99040	-0.66940	7.03660	5.81060	HepG2	ASCC1
RER1	ENSG00000157916.14	2243.59610	1712.33900	0.38970	6.69410	5.69850	HepG2	AUH
RER1	ENSG00000157916.14	3051.92700	2433.78080	0.32640	6.03840	5.02460	K562	UPF1
RER1	ENSG00000157916.14	997.45820	1335.62690	-0.42120	5.44320	4.70180	HepG2	TAF15
RER1	ENSG00000157916.14	1122.96730	1481.02360	-0.39930	4.69430	3.91210	HepG2	QKI
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 45 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RER1 is not available on ENCORE database.

20 RBPs can affect the splicing of RER1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RER1	ENSG00000157916.14	chr1	+	2330853	2330953	2328554	2328659	2332295	2332374	-0.14400	0.00000	0.00000	excluded	HepG2	U2AF1
SE	RER1	ENSG00000157916.14	chr1	+	2330853	2330953	2328554	2328659	2332295	2332374	-0.19300	0.00000	0.00000	excluded	HepG2	U2AF2
SE	RER1	ENSG00000157916.14	chr1	+	2324646	2324670	2323278	2323397	2327222	2327310	0.10300	0.00000	0.00004	included	K562	AQR
SE	RER1	ENSG00000157916.14	chr1	+	2330853	2330953	2328554	2328659	2332295	2332374	-0.12500	0.00000	0.00000	excluded	K562	U2AF1
SE	RER1	ENSG00000157916.14	chr1	+	2330853	2330953	2328554	2328659	2332295	2332374	-0.10700	0.00000	0.00000	excluded	K562	U2AF2
SE	RER1	ENSG00000157916.14	chr1	+	2324646	2324794	2323281	2323397	2327222	2327310	-0.17400	0.00000	0.00000	excluded	K562	HNRNPU
SE	RER1	ENSG00000157916.14	chr1	+	2324708	2324794	2323278	2323397	2327222	2327310	-0.13800	0.00000	0.00016	excluded	K562	ZC3H8
A5SS	RER1	ENSG00000157916.14	chr1	+	2324646	2324794	2324646	2324670	2327222	2327310	-0.39800	0.00000	0.00000	shorter	K562	AQR
SE	RER1	ENSG00000157916.14	chr1	+	2324646	2324794	2323271	2323397	2327222	2327310	-0.13000	0.00002	0.04355	excluded	K562	CPEB4
SE	RER1	ENSG00000157916.14	chr1	+	2324646	2324794	2323271	2323397	2327222	2327310	-0.22900	0.00003	0.02161	excluded	K562	XRN2

Showing 1 to 10 of 39 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RER1

General Information

Functions

Localization

Domains (AlphaFold: RER1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RER1 is not avaliable on ENCORE database.

48 proteins are bound to RER1 RNA:

eCLIP assay for RER1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RER1 is not available on ENCORE database.

44 RBPs can affect the gene expression of RER1 :

The Knockdown/knockout RNA-Seq assay for RER1 is not available on ENCORE database.

20 RBPs can affect the splicing of RER1 :

The Knockdown/knockout RNA-Seq assay for RER1 is not avaliable on ENCORE database.