RBM42

General Information

Gene Name       : RBM42
Gene ID             : ENSG00000126254.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RBM42)


Antibody Validation

 View validation images for all RBM42 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBM42ENSG00000126254.112.5411.066.80ENCSR000AEF
HepG2RBM42ENSG00000126254.1138.6515.4327.04ENCSR985KAT
K562RBM42ENSG00000126254.1149.8821.7635.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
RBM42ENCAB433UOAA305-138A1Released, ENCODE4
RBM42ENCAB702ANMA305-139A1Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RBM42K562CRISPRBGKcLV30-21,BGKcLV30-22BGKcLV30-1,BGKcLV30-2too many bands,NotSatisfiedENCODE4
RBM42HepG2CRISPRBGHcLV32-19,BGHcLV32-20BGHcLV32-1,BGHcLV32-2NO CLEAR BAND,NotSatisfiedENCODE4
RBM42293TshRNARBM42-BG293LV05-77,RBM42-BG293LV05-78NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
RBM42293TshRNABG293LV05-79,BG293LV05-80BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
RBM42293TshRNARBM42-BG293LV06-85B,RBM42-BG293LV06-86BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
RBM42Product_ID: A305-138A
Lot_ID: 1
Source: Bethyl Labs
Target Name: RBM42-human		 Bethyl_A305-138A_1_RBM42.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RBM42 specific antibody, A305-138A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RBM42-specific antibody, A305-138A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
RBM42Product_ID: A305-139A
Lot_ID: 1
Source: Bethyl Labs
Target Name: RBM42-human		 Bethyl_A305-139A_1_RBM42.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RBM42 specific antibody, A305-139A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RBM42-specific antibody, A305-139A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for RBM42 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RBM42 RNA is bound by 9 proteins.  







eCLIP assay for RBM42 is not avaliable on ENCORE database.





9 proteins are bound to RBM42 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193612847336128542+3'-UTR4.489526.35799K562PCBP1
chr193612851936128569+3'-UTR3.711693.88460HepG2PCBP2
chr193612844536128554+3'-UTR,CDS3.569114.48159HepG2LARP4
chr193612820436128250+CDS,intron-Distal,intron-Proximal3.570804.06757K562UCHL5
chr193612213636122246+CDS,intron-Distal,intron-Proximal3.7479510.15155K562EFTUD2
chr193612485236124900+CDS,intron-Distal4.306255.43223K562PCBP1
chr193612525736125317+CDS,intron-Distal,intron-Proximal3.581364.54206HepG2PRPF8
chr193612414336124209+CDS,intron-Distal,intron-Proximal4.683716.01989HepG2PRPF8
chr193612378536123845+CDS,intron-Distal,intron-Proximal4.112936.10653K562SF3B4
chr193612491836124980+CDS,intron-Distal,intron-Proximal4.619064.68690HepG2PRPF8
chr193612054836120575+CDS3.243833.67697K562YBX3
chr193612426936124325+intron-Distal4.817083.91475K562PTBP1
chr193612428136124342+intron-Distal4.428164.21433K562PRPF8
chr193612527536125308+intron-Distal,intron-Proximal3.884433.02181K562PRPF8
chr193612235636122421+intron-Distal,intron-Proximal4.442174.22101K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBM42 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBM42 is not available on ENCORE database.

  • 90 RBPs can affect the levels of RBM42.  








The Knockdown/knockout RNA-Seq assay for RBM42 is not available on ENCORE database.





90 RBPs can affect the gene expression of RBM42 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBM42ENSG00000126254.7901.31790545.678200.723903.802603.19300HepG2AKAP1
RBM42ENSG00000126254.7338.62370595.55560-0.814607.973707.02100HepG2BOP1
RBM42ENSG00000126254.7390.53030546.73370-0.485402.550001.88550HepG2CPSF6
RBM42ENSG00000126254.7153.28680248.93400-0.699502.639901.32960HepG2CSTF2T
RBM42ENSG00000126254.7666.20910447.801400.573006.598305.68700HepG2CELF1
RBM42ENSG00000126254.7607.73950481.424100.336002.979502.21420HepG2DAZAP1
RBM42ENSG00000126254.7151.56240262.33130-0.791504.680903.48330HepG2DDX24
RBM42ENSG00000126254.71065.12550522.601401.027107.300106.32800HepG2DDX3X
RBM42ENSG00000126254.7374.14280228.658800.710306.986206.01640HepG2DNAJC2
RBM42ENSG00000126254.7563.72480316.765000.831506.582305.22180HepG2EEF2
RBM42ENSG00000126254.7130.04120246.83490-0.924604.189802.81300HepG2AGO1
RBM42ENSG00000126254.7708.52630476.786000.571402.069601.51440HepG2EIF4A3
RBM42ENSG00000126254.7620.94740967.26000-0.639403.222602.58240HepG2ETF1
RBM42ENSG00000126254.7910.45050637.792200.513403.986802.98510HepG2EWSR1
RBM42ENSG00000126254.7793.11540481.457300.720003.031002.30600HepG2FXR1
RBM42ENSG00000126254.7339.19490228.889700.567402.123201.34340HepG2GEMIN5
RBM42ENSG00000126254.7313.63950232.919900.429201.967101.41080HepG2HNRNPA1
RBM42ENSG00000126254.7400.92430259.075800.629902.389701.74070HepG2HNRNPC
RBM42ENSG00000126254.7619.96970438.518600.499504.646003.78910HepG2HNRNPL
RBM42ENSG00000126254.7424.40270257.363300.721507.290006.34260HepG2HNRNPU
RBM42ENSG00000126254.7651.87170501.184700.379102.715201.99810HepG2IGF2BP1
RBM42ENSG00000126254.7376.00520262.888900.516203.915403.05910HepG2ILF2
RBM42ENSG00000126254.7987.06370481.627201.035109.510108.31110HepG2MAGOH
RBM42ENSG00000126254.7820.26740484.257700.760204.712403.90610HepG2MATR3
RBM42ENSG00000126254.7339.72530505.37330-0.573004.537002.98000HepG2NAA15
RBM42ENSG00000126254.7925.55520495.611800.901007.848106.80670HepG2NCBP2
RBM42ENSG00000126254.7426.49040200.067301.091907.117704.82020HepG2NOLC1
RBM42ENSG00000126254.7316.25480524.43450-0.729705.787204.72840HepG2NSUN2
RBM42ENSG00000126254.7700.69020424.876200.7216010.289809.23770HepG2PCBP1
RBM42ENSG00000126254.7350.28950229.548300.609704.511203.59170HepG2PPIL4
RBM42ENSG00000126254.7253.37950423.19620-0.740003.971703.06130HepG2PRPF4
RBM42ENSG00000126254.7643.28150432.359900.573106.006105.26270HepG2PTBP1
RBM42ENSG00000126254.7730.45460455.723900.680507.263606.35640HepG2PUF60
RBM42ENSG00000126254.7636.45080483.794500.395604.166003.47040HepG2PUM1
RBM42ENSG00000126254.7672.33570483.426600.475804.242903.42320HepG2PUM2
RBM42ENSG00000126254.7662.91830481.148000.462304.253903.60890HepG2NELFE
RBM42ENSG00000126254.7549.69260448.172900.294501.969301.43720HepG2RECQL
RBM42ENSG00000126254.7378.43580250.212200.596803.216302.56060HepG2RPS19
RBM42ENSG00000126254.7514.02040290.086600.825202.098101.39580HepG2RPS2
RBM42ENSG00000126254.7373.28400246.276200.599902.918402.09770HepG2RPS3A
RBM42ENSG00000126254.7367.70110229.196100.681903.591802.87500HepG2SAFB2
RBM42ENSG00000126254.71083.82140615.467800.816305.226604.28070HepG2SF3A3
RBM42ENSG00000126254.7650.95210450.084200.532302.760502.16910HepG2SF3B4
RBM42ENSG00000126254.7550.52270437.016400.333002.753902.05400HepG2SLBP
RBM42ENSG00000126254.7412.74770267.285900.626805.824004.94520HepG2SMN1
RBM42ENSG00000126254.7640.79080469.814200.447704.064403.51840HepG2SRSF1
RBM42ENSG00000126254.7737.44640449.989100.7125010.576409.45830HepG2SRSF5
RBM42ENSG00000126254.7292.01720382.23940-0.388402.386101.86590HepG2SRSF9
RBM42ENSG00000126254.7313.08120214.326600.546602.307901.31850HepG2STIP1
RBM42ENSG00000126254.7807.81110511.737500.6585010.572509.48840HepG2SUCLG1
RBM42ENSG00000126254.7181.21420422.35330-1.220809.338608.40540HepG2TAF15
RBM42ENSG00000126254.7440.58980250.093600.816907.636206.88130HepG2TIAL1
RBM42ENSG00000126254.7343.69640252.310900.445802.854402.28410HepG2TRIM56
RBM42ENSG00000126254.7691.59970445.261300.635203.009302.09350HepG2TUFM
RBM42ENSG00000126254.7804.18450636.156100.338001.908101.37610HepG2U2AF1
RBM42ENSG00000126254.7719.27330471.327300.609704.369703.30270HepG2UBE2L3
RBM42ENSG00000126254.7362.79610220.605400.717603.998202.67560HepG2XPO5
RBM42ENSG00000126254.71655.078601042.145800.6672015.2308014.01060K562AGGF1
RBM42ENSG00000126254.7836.70540655.047400.353003.339401.65740K562AKAP1
RBM42ENSG00000126254.71597.839401145.230400.480402.396001.49120K562AKAP8
RBM42ENSG00000126254.73378.502601430.489801.239806.571105.72950K562AQR
RBM42ENSG00000126254.71405.475601137.847000.304703.333902.32340K562ATP5C1
RBM42ENSG00000126254.7895.03530647.459500.467105.250403.91060K562BCLAF1
RBM42ENSG00000126254.7772.82930567.598500.445204.573302.86150K562DDX27
RBM42ENSG00000126254.71787.184701268.050300.495008.907707.82100K562DDX47
RBM42ENSG00000126254.7862.36170672.943000.357703.250301.80230K562DDX6
RBM42ENSG00000126254.71064.38660532.469600.999209.008107.27690K562EFTUD2
RBM42ENSG00000126254.7431.59300245.962300.811107.602006.29110K562EIF3G
RBM42ENSG00000126254.71072.25550829.908400.369503.178401.81260K562EXOSC5
RBM42ENSG00000126254.7967.77800746.707800.374002.744101.89920K562FIP1L1
RBM42ENSG00000126254.7943.43640721.153100.387503.934703.23210K562FXR1
RBM42ENSG00000126254.723.29430155.69420-2.7407017.6903015.48770K562G3BP2
RBM42ENSG00000126254.71824.699201403.339200.378702.456101.74220K562GRSF1
RBM42ENSG00000126254.71885.015501323.419900.510208.326706.78690K562HNRNPU
RBM42ENSG00000126254.7689.26380347.642800.987404.074002.72780K562IGF2BP2
RBM42ENSG00000126254.7526.50910353.451300.574803.545202.15670K562IGF2BP3
RBM42ENSG00000126254.7760.01250364.991601.0581015.4623013.34720K562MAGOH
RBM42ENSG00000126254.71405.959701101.626000.351803.406602.17560K562MAK16
RBM42ENSG00000126254.7529.77130364.195200.540602.549801.66730K562MATR3
RBM42ENSG00000126254.7526.75620324.685000.698002.474501.55210K562PCBP2
RBM42ENSG00000126254.71199.51280847.705300.500704.749303.63270K562PPIG
RBM42ENSG00000126254.71106.08930518.162001.093908.111706.82390K562PRPF8
RBM42ENSG00000126254.7812.05390354.639601.1951021.7383019.94960K562PTBP1
RBM42ENSG00000126254.71278.551801807.27830-0.499304.444303.06360K562PUM1
RBM42ENSG00000126254.71681.725501075.321600.645108.294907.40260K562PUS1
RBM42ENSG00000126254.71380.642701047.840500.397802.486601.91930K562RBM15
RBM42ENSG00000126254.7766.80500339.856301.1738016.6263014.37290K562RBM22
RBM42ENSG00000126254.7585.28380331.448700.820303.065801.57760K562RBM34
RBM42ENSG00000126254.7977.47820527.583700.889604.274203.25570K562RPS19
RBM42ENSG00000126254.7582.22850335.372200.795706.093904.53680K562RPS3
RBM42ENSG00000126254.7319.02620161.826800.979108.734907.16780K562SF3B4
RBM42ENSG00000126254.71096.149501345.10760-0.295303.556502.51170K562SRPK2
RBM42ENSG00000126254.7849.29990347.706301.2883011.7551010.30350K562SRSF1
RBM42ENSG00000126254.7664.92520323.728001.0383012.6373010.25400K562SRSF4
RBM42ENSG00000126254.7561.92670328.484500.774503.554802.33940K562SRSF5
RBM42ENSG00000126254.7606.21390979.68280-0.692507.201304.96010K562SSRP1
RBM42ENSG00000126254.755.53340152.82660-1.460505.898203.42010K562TAF15
RBM42ENSG00000126254.7905.39790351.812601.3636010.905209.34330K562TARDBP
RBM42ENSG00000126254.7758.07210339.386301.1593017.1357014.94950K562TIA1
RBM42ENSG00000126254.7636.04550333.249300.932403.781802.47160K562TRA2A
RBM42ENSG00000126254.789.05300155.81190-0.807103.656402.73040K562U2AF2
RBM42ENSG00000126254.7723.43580998.00770-0.464203.078401.80320K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBM42 is not available on ENCORE database.





2 RBPs can affect the splicing of RBM42 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBM42ENSG00000126254.7chr19+361238373612390336122232361223073612397836124154-0.431000.000000.00000excludedK562AQR
SERBM42ENSG00000126254.7chr19+3612383736123903361222323612230736123978361241540.087000.000790.03158includedK562HNRNPU
A3SSRBM42ENSG00000126254.7chr19+3612397836124154361239993612415436122232361223070.532000.000000.00000longerK562AQR
MXERBM42ENSG00000126254.7chr19+36122232361223073612399936124154361220413612212636124588361249210.114000.017120.097151includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBM42 is not avaliable on ENCORE database.